mRNA_P-wetherbeei_contig21013.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21013.1.1
Unique NamemRNA_P-wetherbeei_contig21013.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig21013.1.1 vs. uniprot
Match: D7FLM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLM0_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 7.150e-6
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   28 PAGGRLSGVTEWKNAVFLWVNI-GGITYANIFMEE 129
            P   R+SGVTEWKNAVFLWVN+ GG  Y N+F E+
Sbjct:  209 PKFSRMSGVTEWKNAVFLWVNVDGGTGYTNLFEED 243
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21013.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLM0_ECTSI7.150e-665.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21013contigP-wetherbeei_contig21013:5..151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FLM0
Model size147
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.17e-06
EggNOG OGs2C9U0@1|root,2S6CS@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_000630.1
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186214.7571874-CDS-P-wetherbeei_contig21013:4..1511683186214.7571874-CDS-P-wetherbeei_contig21013:4..151Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21013 5..151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21013.1.1prot_P-wetherbeei_contig21013.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21013 5..151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21013.1.1

>prot_P-wetherbeei_contig21013.1.1 ID=prot_P-wetherbeei_contig21013.1.1|Name=mRNA_P-wetherbeei_contig21013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=49bp
VENHGTLTSPAGGRLSGVTEWKNAVFLWVNIGGITYANIFMEEVGEIGS
back to top

mRNA from alignment at P-wetherbeei_contig21013:5..151-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21013.1.1 ID=mRNA_P-wetherbeei_contig21013.1.1|Name=mRNA_P-wetherbeei_contig21013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig21013:5..151- (Phaeothamnion wetherbeei SAG_119_79)
GTGGAAAACCACGGCACGCTAACGTCACCGGCGGGAGGCAGGCTCTCGGG
CGTGACTGAATGGAAGAACGCCGTGTTTCTGTGGGTCAACATTGGCGGCA
TAACCTACGCTAACATCTTCATGGAGGAAGTCGGCGAAATCGGCAGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig21013:5..151-

>mRNA_P-wetherbeei_contig21013.1.1 ID=mRNA_P-wetherbeei_contig21013.1.1|Name=mRNA_P-wetherbeei_contig21013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig21013:5..151- (Phaeothamnion wetherbeei SAG_119_79)
GTGGAAAACCACGGCACGCTAACGTCACCGGCGGGAGGCAGGCTCTCGGG
CGTGACTGAATGGAAGAACGCCGTGTTTCTGTGGGTCAACATTGGCGGCA
TAACCTACGCTAACATCTTCATGGAGGAAGTCGGCGAAATCGGCAGC
back to top