mRNA_P-wetherbeei_contig2100.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2100.1.1
Unique NamemRNA_P-wetherbeei_contig2100.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2100.1.1 vs. uniprot
Match: A0A3C0TUK8_9PROT (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TUK8_9PROT)

HSP 1 Score: 229 bits (585), Expect = 8.050e-74
Identity = 111/186 (59.68%), Postives = 140/186 (75.27%), Query Frame = 1
Query:    1 DRLKADLRNEQRKKRAEMFKSSASEIYVVASRHFLKSVVLPSGGVIAGYWPLKDEFDSRPLLEGIAAQGGRLALPVVAGDSGRLIFREWAPGAPLAPAGFGTLGPRENAQEVLPDLVITPLLAFDRRGCRLGYGGGFYDRSLTALRVSGKCKLAIGLGFSAQRVQQVPVSDADARLDGVVTETGVI 558
            DR K ++R + R  RAE+F  +  E YV A+ HF  SV +P+GGV+AGY P++DEFD RPLLE +A +G  L+LPV+ GD+GRLIFREW  G PL PAG GT+GP    +EV+PD+VITPLLAFDR+G RLGYGGG+YDR+L  LR  G+C+ AIGLGF+ QRV Q P++  D RLD +VTE GVI
Sbjct:   10 DRAKLEMRVKSRALRAELFHRATPETYVRAAAHFTGSVEIPAGGVVAGYLPIRDEFDPRPLLEALARRGAALSLPVIDGDTGRLIFREWRSGDPLRPAGNGTMGPESGKREVVPDVVITPLLAFDRKGGRLGYGGGYYDRTLRVLRAMGRCRQAIGLGFAGQRVPQAPMTRDDVRLDAIVTEDGVI 195          
BLAST of mRNA_P-wetherbeei_contig2100.1.1 vs. uniprot
Match: A0A7V6YA53_9PROT (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7V6YA53_9PROT)

HSP 1 Score: 160 bits (405), Expect = 1.290e-46
Identity = 84/184 (45.65%), Postives = 107/184 (58.15%), Query Frame = 1
Query:    1 DRLKADLRNEQRKKRAEMFKSSASEIYVVASRHFLKSVVLPSGGVIAGYWPLKDEFDSRPLLEGIAAQGGRLALPVVAGDSGRLIFREWAPGAPLAPAGFGTLGPRENAQEVLPDLVITPLLAFDRRGCRLGYGGGFYDRSLTALRVSGKCKLAIGLGFSAQRVQQVPVSDADARLDGVVTETG 552
            +  KA LR    +KRA ++    +E    A+ HF     L  G ++A YWP++DE D RP+L  +   G  + LPVV G    L  R W  GAPL P+GFGTL P E A  V PD+++ PLL FDR G RLGYGGG+YDR+L A+    +    IGL FSAQ ++ VP    D  LD VVTE G
Sbjct:    7 EEAKAGLRAAAHRKRAALYAGDRAEAARAAAEHFFAGASLAPGEIVAAYWPIRDELDCRPILTRLVDSGQPVCLPVVVGPEQPLELRLWEAGAPLYPSGFGTLAPAETAPLVRPDVILMPLLGFDRHGTRLGYGGGYYDRTLDAME---RLPRLIGLAFSAQELEHVPREPHDVPLDAVVTEKG 187          
BLAST of mRNA_P-wetherbeei_contig2100.1.1 vs. uniprot
Match: A0A0F5FCY9_9HYPH (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Devosia geojensis TaxID=443610 RepID=A0A0F5FCY9_9HYPH)

HSP 1 Score: 158 bits (400), Expect = 7.130e-46
Identity = 87/186 (46.77%), Postives = 113/186 (60.75%), Query Frame = 1
Query:    1 DRLKADLRNEQRKKRAEMFKSSASEIYVVASRHFLKSVVLPSGGVIAGYWPLKDEFDSRPLLEGIAAQGGRLALPVVAGDSGRLIFREWAPGAPLAPAGFGTLGPRENAQEVLPDLVITPLLAFDRRGCRLGYGGGFYDRSLTALRVSGKCKLAIGLGFSAQRVQQVPVSDADARLDGVVTETGVI 558
            +R KA LR +  +KRA +  S+ +E    A  HF   + L    V+A YW ++DE D +P+L  +   G R+ LPVV GD   L  R W  GAPL PAGFGTL P + A    PD++I PLL FD RG RLGYGGG+YDR+L  L  + K +L +GL F+AQ++  +P    D  LD VVTE GVI
Sbjct:    7 ERAKAALRVKAHEKRAALSASARAEAAQAACAHFFDGIALAGEEVVAAYWGIRDEMDCQPILVRLMDSGQRVCLPVVTGDGEPLELRVWEDGAPLYPAGFGTLAPEDLAPTAEPDVIIMPLLGFDDRGTRLGYGGGYYDRTLAGL--ARKPRL-VGLAFAAQKLDHIPREAHDIPLDAVVTEAGVI 189          
BLAST of mRNA_P-wetherbeei_contig2100.1.1 vs. uniprot
Match: A0A6N7FCJ2_9PROT (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FCJ2_9PROT)

HSP 1 Score: 158 bits (399), Expect = 1.400e-45
Identity = 87/186 (46.77%), Postives = 111/186 (59.68%), Query Frame = 1
Query:    7 LKADLRNEQRKKRAEMFKSSASEIYVVASRHFLKS----VVLPSGGVIAGYWPLKDEFDSRPLLEGIAAQGGRLALPVVAGDSGRLIFREWAPGAPLAPAGFGTLGPRENAQEVLPDLVITPLLAFDRRGCRLGYGGGFYDRSLTALRVSGKCKLAIGLGFSAQRVQQVPVSDADARLDGVVTETG 552
            +KA +R E   +RA   +    E      RHF+ +    + L  G V++GYWP++DE D RPLLE +A  G   ALPVV      L FR W PG  LA AGFGT  P   A+ V PDL++TPLLAFD  G RLGYG  +YD +L ALR +G+  +A+G+ F AQR+   P  D D  LD V+TETG
Sbjct:    7 IKARMRAEALLRRAAAHRDGGPEAAEAVQRHFMAALGNGISLAPGAVVSGYWPMRDELDIRPLLERLAGAGYVCALPVVGPRGTPLSFRRWRPGDELASAGFGTTEPATRAEPVSPDLLLTPLLAFDAAGGRLGYGAAYYDITLRALRRAGEA-VAVGIAFDAQRIDAAPHEDHDEPLDWVITETG 191          
BLAST of mRNA_P-wetherbeei_contig2100.1.1 vs. uniprot
Match: UPI001D054DE4 (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI001D054DE4)

HSP 1 Score: 157 bits (398), Expect = 1.930e-45
Identity = 81/154 (52.60%), Postives = 100/154 (64.94%), Query Frame = 1
Query:   97 HFLKSVVLPSGGVIAGYWPLKDEFDSRPLLEGIAAQGGRLALPVVAGDSGRLIFREWAPGAPLAPAGFGTLGPRENAQEVLPDLVITPLLAFDRRGCRLGYGGGFYDRSLTALRVSGKCKLAIGLGFSAQRVQQVPVSDADARLDGVVTETGVI 558
            HFL +V L  G V++ YWP+ DE D RPL++ +A +G RLALP +      L FR W PG  L PAGFGT  P   A+E+ P L++ PLLAFD  G RLGYGGGFYDRSL  LR +G   LA+GL ++ Q+V  VP    D  LD VVTE GV+
Sbjct:   46 HFLAAVPLAEGVVVSAYWPMGDEIDPRPLMDALAGRGHRLALPAIRAAGQPLDFRAWRPGDALQPAGFGTREPLSGAEELRPGLLLVPLLAFDGAGYRLGYGGGFYDRSLALLRKAGDT-LAVGLAYAGQQVAAVPREVTDQPLDLVVTERGVV 198          
BLAST of mRNA_P-wetherbeei_contig2100.1.1 vs. uniprot
Match: A0A239PZX6_9PROT (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Amphiplicatus metriothermophilus TaxID=1519374 RepID=A0A239PZX6_9PROT)

HSP 1 Score: 156 bits (395), Expect = 4.310e-45
Identity = 79/157 (50.32%), Postives = 105/157 (66.88%), Query Frame = 1
Query:   88 ASRHFLKSVVLPSGGVIAGYWPLKDEFDSRPLLEGIAAQGGRLALPVVAGDSGRLIFREWAPGAPLAPAGFGTLGPRENAQEVLPDLVITPLLAFDRRGCRLGYGGGFYDRSLTALRVSGKCKLAIGLGFSAQRVQQVPVSDADARLDGVVTETGVI 558
            A+++FL++V +P G V+A Y P++DE D+ PL E +AA+G  LALPVVA     L FR + PG  L    FG   P E A+ + PD+V+ PLLAFDR G RLGYGGG+YDRSL ALR +G+  LA+G  + AQ V  +P+S  D RLD ++TE   I
Sbjct:   37 AAKNFLEAVAVPEGAVVALYHPIRDELDTAPLAEALAARGAALALPVVARRDAPLGFRRYRPGDALVKGAFGICAPDEKAEALAPDIVVAPLLAFDRAGGRLGYGGGYYDRSLAALR-AGRPVLAVGYAYGAQEVDALPLSPLDQRLDWIITEREAI 192          
BLAST of mRNA_P-wetherbeei_contig2100.1.1 vs. uniprot
Match: A0A3M1JRM6_9PROT (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JRM6_9PROT)

HSP 1 Score: 156 bits (394), Expect = 5.750e-45
Identity = 90/187 (48.13%), Postives = 118/187 (63.10%), Query Frame = 1
Query:   10 KADLRNEQRKKRAEMFKSSASEIYVVASRH----FLKSVVLPSGGVIAGYWPLKDEFDSRPLLEGIAAQGGRLALPVVAGDSGRLIFREWAPGAPLAPAGFGTLGPRENAQEVLPDLVITPLLAFDRRGCRLGYGGGFYDRSLTALRVSGK-CKLAIGLGFSAQRVQQVPVSDADARLDGVVTETGV 555
            K+ LR E  ++RA +    ++E+ V A+R     F+ ++ L +  V+A YWP++ E D+RPL+E + A+G  +ALPVV G +  L+FR W PG PL    FG   P E AQ V PD++  PLLAFD +G RLGYGGGFYDR+L ALR  GK   LA GL F  QRV  +P  D D RLD VVT+  V
Sbjct:    5 KSALRAEADRRRARL----SAELGVAAARRLAARFVNALELSADQVVALYWPIRSELDTRPLMEMLTARGVGVALPVVVGPARPLVFRRWRPGLPLVDGHFGIRVPPETAQVVRPDVLGVPLLAFDDQGHRLGYGGGFYDRTLEALRADGKPAPLAAGLAFERQRVGWLPAHDGDQRLDVVVTDHDV 187          
BLAST of mRNA_P-wetherbeei_contig2100.1.1 vs. uniprot
Match: A0A1F3B5S5_9PROT (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Alphaproteobacteria bacterium RIFOXYD12_FULL_60_8 TaxID=1797233 RepID=A0A1F3B5S5_9PROT)

HSP 1 Score: 155 bits (393), Expect = 8.150e-45
Identity = 89/183 (48.63%), Postives = 114/183 (62.30%), Query Frame = 1
Query:   10 KADLRNEQRKKRAEMFKSSASEIYVVASRHFLKSVVLPSGGVIAGYWPLKDEFDSRPLLEGIAAQGGRLALPVVAGDSGRLIFREWAPGAPLAPAGFGTLGPRENAQEVLPDLVITPLLAFDRRGCRLGYGGGFYDRSLTALRVSGKCKLAIGLGFSAQRVQQVPVSDADARLDGVVTETGVI 558
            KA LR +    R  +F+    +  V  +RH L SV+ P G V+AGYWPL  E D RPL E +AA+G  LALPVV G +  LIFR W P   L      T  P  +A+ + PD+V+ PLLAFDRRG RLG+GGG+YDR+L +LR S + + AIGL F+ Q V  +P    D  LD +VTETGV+
Sbjct:   11 KAALRQQFLAVRKRLFEEVGHKASVALARHAL-SVIKPEG-VVAGYWPLVGEVDPRPLTEKLAARGQTLALPVVVGPTDPLIFRHWIPDTALEEGAHNTWHPPASAKSIRPDVVLVPLLAFDRRGVRLGFGGGYYDRTLESLRRSAEVQ-AIGLAFAGQEVDTLPKDRHDQLLDIIVTETGVV 190          
BLAST of mRNA_P-wetherbeei_contig2100.1.1 vs. uniprot
Match: UPI00197F5F7C (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI00197F5F7C)

HSP 1 Score: 155 bits (393), Expect = 1.100e-44
Identity = 81/142 (57.04%), Postives = 96/142 (67.61%), Query Frame = 1
Query:  133 VIAGYWPLKDEFDSRPLLEGIAAQGGRLALPVVAGDSGRLIFREWAPGAPLAPAGFGTLGPRENAQEVLPDLVITPLLAFDRRGCRLGYGGGFYDRSLTALRVSGKCKLAIGLGFSAQRVQQVPVSDADARLDGVVTETGVI 558
            V++ YWP+ DE D RPLL+ +AA G RLALP + G    L FR WAPG PL PAGFGT  P   +  + P +++ PLLAFD  G RLGYGGGFYDRSL  LR  G   LA+GL FSAQ+V QVP    D +LDG+VTE  VI
Sbjct:   63 VVSAYWPMGDEMDPRPLLQALAAVGCRLALPALRGPGRPLDFRAWAPGDPLFPAGFGTEEPAAESPLLEPQVLLVPLLAFDALGYRLGYGGGFYDRSLALLRTRGDI-LALGLAFSAQQVGQVPRDGNDQKLDGLVTEKAVI 203          
BLAST of mRNA_P-wetherbeei_contig2100.1.1 vs. uniprot
Match: A0A1Y6BWU2_9HYPH (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6BWU2_9HYPH)

HSP 1 Score: 155 bits (392), Expect = 1.420e-44
Identity = 76/150 (50.67%), Postives = 94/150 (62.67%), Query Frame = 1
Query:  103 LKSVVLPSGGVIAGYWPLKDEFDSRPLLEGIAAQGGRLALPVVAGDSGRLIFREWAPGAPLAPAGFGTLGPRENAQEVLPDLVITPLLAFDRRGCRLGYGGGFYDRSLTALRVSGKCKLAIGLGFSAQRVQQVPVSDADARLDGVVTETG 552
            L  V LP G V+AGYWPL+DE D RP +  +   G  L LPV+ G    L FR W P A L  AGFGT  P   A+E +P +++ PL+ FD  G RLGYGGGFYDR+L  LR  G   LAIGL ++AQR +++P    D RLD +VTE G
Sbjct:   45 LADVALPEGAVVAGYWPLRDEIDPRPAMLALLGLGHPLCLPVIVGAGKPLAFRAWTPDARLQAAGFGTQVPGPEAEERVPSVLLVPLVGFDDEGFRLGYGGGFYDRTLAKLRAGGLQALAIGLAYAAQRAERLPRETTDERLDWIVTEAG 194          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2100.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TUK8_9PROT8.050e-7459.685-formyltetrahydrofolate cyclo-ligase n=1 Tax=Alph... [more]
A0A7V6YA53_9PROT1.290e-4645.655-formyltetrahydrofolate cyclo-ligase n=1 Tax=Alph... [more]
A0A0F5FCY9_9HYPH7.130e-4646.775-formyltetrahydrofolate cyclo-ligase n=1 Tax=Devo... [more]
A0A6N7FCJ2_9PROT1.400e-4546.775-formyltetrahydrofolate cyclo-ligase n=1 Tax=Alph... [more]
UPI001D054DE41.930e-4552.605-formyltetrahydrofolate cyclo-ligase n=1 Tax=Pela... [more]
A0A239PZX6_9PROT4.310e-4550.325-formyltetrahydrofolate cyclo-ligase n=1 Tax=Amph... [more]
A0A3M1JRM6_9PROT5.750e-4548.135-formyltetrahydrofolate cyclo-ligase n=1 Tax=Alph... [more]
A0A1F3B5S5_9PROT8.150e-4548.635-formyltetrahydrofolate cyclo-ligase n=1 Tax=Alph... [more]
UPI00197F5F7C1.100e-4457.045-formyltetrahydrofolate cyclo-ligase n=1 Tax=Pela... [more]
A0A1Y6BWU2_9HYPH1.420e-4450.675-formyltetrahydrofolate cyclo-ligase n=1 Tax=Tist... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2100contigP-wetherbeei_contig2100:1185..1742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1535287.JP74_20820
Preferred nameMA20_17975
PFAMs5-FTHF_cyc-lig
Model size558
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00183
KEGG koko:K01934
KEGG ReactionR02301
KEGG Pathwayko00670,ko01100,map00670,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.7e-45
EggNOG OGsCOG0212@1|root,COG0212@2|Bacteria,1MZG0@1224|Proteobacteria,2UBY4@28211|Alphaproteobacteria,3N73S@45401|Hyphomicrobiaceae
EC6.3.3.2
DescriptionBelongs to the 5-formyltetrahydrofolate cyclo-ligase family
Cds size558
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186214.283972-CDS-P-wetherbeei_contig2100:1184..17421683186214.283972-CDS-P-wetherbeei_contig2100:1184..1742Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2100 1185..1742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2100.1.1prot_P-wetherbeei_contig2100.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2100 1185..1742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2100.1.1

>prot_P-wetherbeei_contig2100.1.1 ID=prot_P-wetherbeei_contig2100.1.1|Name=mRNA_P-wetherbeei_contig2100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
DRLKADLRNEQRKKRAEMFKSSASEIYVVASRHFLKSVVLPSGGVIAGYW
PLKDEFDSRPLLEGIAAQGGRLALPVVAGDSGRLIFREWAPGAPLAPAGF
GTLGPRENAQEVLPDLVITPLLAFDRRGCRLGYGGGFYDRSLTALRVSGK
CKLAIGLGFSAQRVQQVPVSDADARLDGVVTETGVI
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mRNA from alignment at P-wetherbeei_contig2100:1185..1742-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2100.1.1 ID=mRNA_P-wetherbeei_contig2100.1.1|Name=mRNA_P-wetherbeei_contig2100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig2100:1185..1742- (Phaeothamnion wetherbeei SAG_119_79)
GACCGCCTAAAAGCTGATCTTCGGAACGAACAGCGCAAAAAGCGCGCGGA AATGTTCAAAAGTTCCGCTTCCGAAATATATGTTGTTGCCTCCAGACATT TCCTGAAGAGTGTCGTGCTTCCTTCCGGTGGGGTGATTGCAGGCTATTGG CCCCTGAAAGATGAATTTGATTCCCGCCCCTTGCTGGAAGGTATCGCGGC CCAGGGGGGGCGGTTGGCCTTGCCGGTGGTTGCAGGGGATTCGGGGCGGC TGATTTTCAGGGAATGGGCGCCTGGGGCGCCCCTTGCGCCTGCAGGATTT GGCACTCTGGGTCCCAGGGAAAATGCGCAGGAGGTCTTGCCGGACCTGGT CATCACTCCCCTGCTGGCCTTTGACAGGCGGGGCTGCCGGTTAGGCTATG GCGGCGGGTTTTATGACCGCAGCCTGACGGCTTTGCGCGTGTCCGGGAAA TGTAAACTTGCGATCGGACTGGGCTTTTCGGCGCAACGGGTGCAACAGGT TCCGGTGAGTGACGCGGACGCGCGCCTGGACGGCGTAGTGACCGAAACCG GGGTAATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2100:1185..1742-

>mRNA_P-wetherbeei_contig2100.1.1 ID=mRNA_P-wetherbeei_contig2100.1.1|Name=mRNA_P-wetherbeei_contig2100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig2100:1185..1742- (Phaeothamnion wetherbeei SAG_119_79)
GACCGCCTAAAAGCTGATCTTCGGAACGAACAGCGCAAAAAGCGCGCGGA
AATGTTCAAAAGTTCCGCTTCCGAAATATATGTTGTTGCCTCCAGACATT
TCCTGAAGAGTGTCGTGCTTCCTTCCGGTGGGGTGATTGCAGGCTATTGG
CCCCTGAAAGATGAATTTGATTCCCGCCCCTTGCTGGAAGGTATCGCGGC
CCAGGGGGGGCGGTTGGCCTTGCCGGTGGTTGCAGGGGATTCGGGGCGGC
TGATTTTCAGGGAATGGGCGCCTGGGGCGCCCCTTGCGCCTGCAGGATTT
GGCACTCTGGGTCCCAGGGAAAATGCGCAGGAGGTCTTGCCGGACCTGGT
CATCACTCCCCTGCTGGCCTTTGACAGGCGGGGCTGCCGGTTAGGCTATG
GCGGCGGGTTTTATGACCGCAGCCTGACGGCTTTGCGCGTGTCCGGGAAA
TGTAAACTTGCGATCGGACTGGGCTTTTCGGCGCAACGGGTGCAACAGGT
TCCGGTGAGTGACGCGGACGCGCGCCTGGACGGCGTAGTGACCGAAACCG
GGGTAATC
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