mRNA_P-wetherbeei_contig20975.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A2V7EAT1_9BACT (POLIIIAc domain-containing protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7EAT1_9BACT) HSP 1 Score: 114 bits (286), Expect = 7.730e-29 Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = 1
Query: 1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILNCETM 372
VHS+ +RE+MTAR+VRA+ HP LG R PY+ D EAVF AA H A+EIN SP R DL+D+ ARRA+++G+ +++ TD H +FDN+ VAVARRA + ++LN +
Sbjct: 135 VHSRFKQTREEMTARIVRALGHPKVHVLAHPTGRLLGSRDPYDVDLEAVFAAARQHGKAIEINASPERLDLADVHARRAAELGIPIAINTDTHYLHNFDNLALGVAVARRAWIGPSQVLNARPL 258
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A7C2J8H8_9BACT (DNA polymerase beta n=1 Tax=candidate division NC10 bacterium TaxID=2072417 RepID=A0A7C2J8H8_9BACT) HSP 1 Score: 115 bits (288), Expect = 1.530e-27 Identity = 61/120 (50.83%), Postives = 78/120 (65.00%), Query Frame = 1
Query: 1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILN 360
VHS+ MSRE+MTAR+VRAV HP +G RA YE D EAV KAA TA+EIN SP R DL+DL ARRA ++G+ + ++TDAH+ D M + V+VARRA L+ +LN
Sbjct: 439 VHSRFKMSREEMTARIVRAVQHPRVHVLGHPTGRLIGERAAYEVDMEAVLKAAHGSGTAVEINASPSRLDLNDLHARRAKELGVPIVISTDAHTIGQLDYMRFGVSVARRAWLTPKDVLN 558
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A3C0A3C4_9BACT (DNA polymerase beta n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A3C0A3C4_9BACT) HSP 1 Score: 114 bits (285), Expect = 4.420e-27 Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 1
Query: 1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILNC 363
VHS M + E+MTAR++ A+++P L +R PY+ ++ AVFKAA TA+EING P RQDL+D+ AR A + GL+L L++DAHS A M AV VARRAGL+ D +LNC
Sbjct: 471 VHSSMRLGEEEMTARVLSAMANPYMDALAHPSGRQLNKREPYKLNYAAVFKAARHCGTALEINGQPERQDLTDVTARMAKEAGLKLLLSSDAHSAAQLSYMEQAVIVARRAGLTKDDVLNC 591
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A1F4Q0L2_9BACT (DNA polymerase beta n=2 Tax=unclassified candidate division NC10 TaxID=1207073 RepID=A0A1F4Q0L2_9BACT) HSP 1 Score: 112 bits (279), Expect = 2.660e-26 Identity = 59/120 (49.17%), Postives = 76/120 (63.33%), Query Frame = 1
Query: 1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILN 360
VHS+ MSRE+MTAR+VRAV HPL +G R YE D EAV AA TA+EIN SP R DL+DL ARRA ++G+ +++ TDAH+ D M + V+VARR L+ +LN
Sbjct: 439 VHSRFKMSREEMTARIVRAVQHPLVHLLGHPTGRLIGERGAYEVDMEAVLAAARTAGTAVEINASPSRLDLNDLHARRARELGIAIAIDTDAHTVDQLDYMRFGVSVARRGWLTPRDVLN 558
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A2V6WIX9_9BACT (DNA polymerase beta n=5 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6WIX9_9BACT) HSP 1 Score: 110 bits (274), Expect = 1.270e-25 Identity = 59/120 (49.17%), Postives = 76/120 (63.33%), Query Frame = 1
Query: 1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILN 360
VHS+ R MTAR+VRA+ +P LG R PY+ D +AVF AA AH A+EIN SP R DL+D ARRA++ G+ LS++TD H ++ DN+ VAVARRA L D+ILN
Sbjct: 438 VHSRFKQERATMTARIVRALGNPHMDILGHPTGRRLGSREPYDVDLDAVFAAARAHGKAVEINASPERLDLNDAHARRAAEAGVLLSISTDTHYLSELDNVDLGVAVARRAWLGRDQILN 557
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A136KEZ2_9BACT (DNA polymerase/3'-5' exonuclease PolX n=1 Tax=Microgenomates bacterium OLB22 TaxID=1617428 RepID=A0A136KEZ2_9BACT) HSP 1 Score: 108 bits (270), Expect = 4.910e-25 Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = 1
Query: 1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILN 360
+HS + S+EDMT R+++A+S+P +G+R +ADW+A+F + H AMEIN SP R DL +L+ RRA+ G S+ TD+H+ A +M + V+VARRAGL+ D+I+N
Sbjct: 477 IHSSFSQSKEDMTKRILKALSYPKVKIMGHPTGRMIGKRDSIDADWDAIFTHCVKHQIAMEINASPERLDLPELLVRRAADTGCHFSIDTDSHAAAHLPSMLYGVSVARRAGLTKDRIIN 596
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A382FQP9_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382FQP9_9ZZZZ) HSP 1 Score: 102 bits (255), Expect = 6.660e-25 Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 1
Query: 1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILNCETM 372
VHS M+M MT R++RA+ HP LGRR P++ D + V +AAL + A+EIN +P R DL+D+ ARRA ++G+++++ TDAHS D+M + V ARR + D +LN T+
Sbjct: 63 VHSLMDMDETTMTDRVIRAMQHPSVDIIAHPTGRLLGRREPFQLDTDEVLRAALDLDVAVEINANPNRLDLNDVQARRAKELGVKITINTDAHSTQGLDHMSYGVDQARRGWIERDDVLNTMTV 186
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A800JXX9_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A800JXX9_9BACT) HSP 1 Score: 100 bits (250), Expect = 1.260e-24 Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 1
Query: 1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILNCETM 372
VHS M+M + MT R++ A+ HP LGRR P+ D + V +AA + A+EIN +P R DLSD+ ARRA ++G+ +S+ TDAHS D+M + V ARRA + D +LN T+
Sbjct: 20 VHSLMDMDQATMTDRVITAMQHPNVDIVGHPTGRLLGRREPFRLDMDEVLRAASELDVAVEINANPNRLDLSDIQARRAKELGVMISINTDAHSVQRLDHMSYGVDQARRAWIEKDDVLNTMTV 143
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A3D0YXW2_9FIRM (POLIIIAc domain-containing protein (Fragment) n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A3D0YXW2_9FIRM) HSP 1 Score: 105 bits (262), Expect = 2.320e-24 Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILNCE 366
VH+++ + RE MTAR +RA P +G+R PYE D + V +A T +EIN SP R D+ D AR+A ++G++L L TDAH+P ++M W +A+ARRA L + ++NC
Sbjct: 281 VHTRLRLDREAMTARFLRAAEEPSVDALGHLTGRLIGQRDPYEVDLDRVLEACRRTGTWLEINASPERLDVDDRAARKARELGVKLMLGTDAHAPVCLEDMAWGIAIARRAWLGPEDVVNCR 402
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A538R142_9BACT (DNA-directed DNA polymerase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A538R142_9BACT) HSP 1 Score: 106 bits (264), Expect = 3.010e-24 Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = 1
Query: 1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILNCETM 372
VHS+ SRE+MTAR+VRA+++P L RAPY+ D EAVF+AA H A+EIN SP R DL D ARRA+ +G+ ++++TD H + +++ VAVARRA L ++LN +
Sbjct: 439 VHSRFKQSREEMTARIVRALANPWMNVLAHPTGRLLSSRAPYDVDLEAVFEAAARHGKAVEINASPDRLDLGDTHARRAAALGIPIAISTDTHYLRELEHVELGVAVARRAWLEPAQVLNARPL 562 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig20975.2.1 >prot_P-wetherbeei_contig20975.2.1 ID=prot_P-wetherbeei_contig20975.2.1|Name=mRNA_P-wetherbeei_contig20975.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp MNMSREDMTARLVRAVSHPLARVLAHPSGRVLGRRAPYEADWEAVFKAALback to top mRNA from alignment at P-wetherbeei_contig20975:818..1192- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig20975.2.1 ID=mRNA_P-wetherbeei_contig20975.2.1|Name=mRNA_P-wetherbeei_contig20975.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig20975:818..1192- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig20975:818..1192- >mRNA_P-wetherbeei_contig20975.2.1 ID=mRNA_P-wetherbeei_contig20975.2.1|Name=mRNA_P-wetherbeei_contig20975.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig20975:818..1192- (Phaeothamnion wetherbeei SAG_119_79)back to top |