mRNA_P-wetherbeei_contig20961.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20961.1.1
Unique NamemRNA_P-wetherbeei_contig20961.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20961.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20961contigP-wetherbeei_contig20961:421..1195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size775
Hectar predicted targeting categoryother localisation
Exons1
Cds size462
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186212.8824441-UTR-P-wetherbeei_contig20961:420..6761683186212.8824441-UTR-P-wetherbeei_contig20961:420..676Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20961 421..676 -
1683186212.9013543-UTR-P-wetherbeei_contig20961:1138..11951683186212.9013543-UTR-P-wetherbeei_contig20961:1138..1195Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20961 1139..1195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186212.892162-CDS-P-wetherbeei_contig20961:676..11381683186212.892162-CDS-P-wetherbeei_contig20961:676..1138Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20961 677..1138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20961.1.1prot_P-wetherbeei_contig20961.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20961 677..1138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20961.1.1

>prot_P-wetherbeei_contig20961.1.1 ID=prot_P-wetherbeei_contig20961.1.1|Name=mRNA_P-wetherbeei_contig20961.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
MFPSAITYHPCCCRRHLRRPPPANSRRLLPKQPNKQNKTDAKPGGPGGGA
QPDRRVPRSSGGTLRPHADVLGQLGAVPLPDLGNGERRCPDLAPARFVDG
SVVGHLPRRRGRARRRVRRRWPRPQPRRGGGEYHPRAGTEARRLALLCAL
SEK*
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mRNA from alignment at P-wetherbeei_contig20961:421..1195-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20961.1.1 ID=mRNA_P-wetherbeei_contig20961.1.1|Name=mRNA_P-wetherbeei_contig20961.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=775bp|location=Sequence derived from alignment at P-wetherbeei_contig20961:421..1195- (Phaeothamnion wetherbeei SAG_119_79)
TTCGCCAACGAGAGCCCCCGCCTGTCAAATTCTGCTTTGTCGTCGAATGC
CCAAAAGATGTTTCCTTCAGCCATTACATATCACCCTTGCTGCTGCCGCC
GTCATCTTCGCCGCCCGCCGCCCGCCAACTCTCGCCGCCTTCTCCCGAAA
CAACCGAACAAACAAAATAAAACCGATGCAAAACCAGGCGGACCCGGCGG
AGGAGCACAACCTGATAGACGTGTACCCAGAAGTAGCGGCGGAACTCTAC
GACCGCATGCTGACGTACTCGGCCAACTCGGAGCCGTCCCACTACCAGAT
CTCGGAAACGGAGAACGCCGCTGTCCGGATCTGGCTCCGGCACGGTTCGT
GGATGGTTCCGTGGTGGGGCATCTTCCGCGCAGGCGTGGGCGGGCCCGAC
GGCGGGTCCGGCGGCGGTGGCCAAGGCCACAGCCACGGCGCGGCGGGGGC
GAGTACCATCCTAGAGCGGGAACAGAGGCGCGGCGGTTAGCCCTGCTGTG
TGCGTTGTCGGAAAAGTAGAACCGGTGAGCTGCTCACGCGTGCCGACTTT
CCCTCCAGCAAGTCTTTTTGTTATACACGAACTGCTTCCGGCCGGCCGAA
GCCGTTCACAAGGGGGCGGGCGGACGGCCAGCCAGGCGGTGCGCAAGCGC
TGCCGTCTTGCGGCTTGTGGCCTGGAGCTTATGAGGTAGGGAAGCAGGCA
GGCGGGCCTCTGCTTGAGAGAACGGGAGATACGATTGGATATTTATGGTA
GTGTAAAATAGCTTATGCACAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20961:421..1195-

>mRNA_P-wetherbeei_contig20961.1.1 ID=mRNA_P-wetherbeei_contig20961.1.1|Name=mRNA_P-wetherbeei_contig20961.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig20961:421..1195- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTCCTTCAGCCATTACATATCACCCTTGCTGCTGCCGCCGTCATCT
TCGCCGCCCGCCGCCCGCCAACTCTCGCCGCCTTCTCCCGAAACAACCGA
ACAAACAAAATAAAACCGATGCAAAACCAGGCGGACCCGGCGGAGGAGCA
CAACCTGATAGACGTGTACCCAGAAGTAGCGGCGGAACTCTACGACCGCA
TGCTGACGTACTCGGCCAACTCGGAGCCGTCCCACTACCAGATCTCGGAA
ACGGAGAACGCCGCTGTCCGGATCTGGCTCCGGCACGGTTCGTGGATGGT
TCCGTGGTGGGGCATCTTCCGCGCAGGCGTGGGCGGGCCCGACGGCGGGT
CCGGCGGCGGTGGCCAAGGCCACAGCCACGGCGCGGCGGGGGCGAGTACC
ATCCTAGAGCGGGAACAGAGGCGCGGCGGTTAGCCCTGCTGTGTGCGTTG
TCGGAAAAGTAG
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