mRNA_P-wetherbeei_contig20949.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20949.1.1
Unique NamemRNA_P-wetherbeei_contig20949.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20949.1.1 vs. uniprot
Match: UPI001BA53E1B (Flp family type IVb pilin n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BA53E1B)

HSP 1 Score: 55.1 bits (131), Expect = 6.650e-9
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 MLGFIESFCVDESGATAIEYALIASGIFMAIISVVGQVGSSLTGIFATV 147
            M   +  F  DE+GATAIEYAL+A GI + I++VVG +GSSL+G FA+V
Sbjct:    1 MRALLTRFVDDEAGATAIEYALVAGGISIVIVTVVGGIGSSLSGTFASV 49          
BLAST of mRNA_P-wetherbeei_contig20949.1.1 vs. uniprot
Match: UPI001E38EE8D (Flp family type IVb pilin n=1 Tax=Bradyrhizobium oropedii TaxID=1571201 RepID=UPI001E38EE8D)

HSP 1 Score: 54.7 bits (130), Expect = 9.450e-9
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    1 MLGFIESFCVDESGATAIEYALIASGIFMAIISVVGQVGSSLTGIFATV 147
            M   +++FC DE+GATAIEY LIA+G+ +AII+ V  VG+ L+G ++TV
Sbjct:    1 MKKLVQNFCADETGATAIEYGLIATGVAIAIIAAVKGVGTKLSGTYSTV 49          
BLAST of mRNA_P-wetherbeei_contig20949.1.1 vs. uniprot
Match: A0A0A8K956_9HYPH (Flp pilus assembly protein, pilin Flp n=2 Tax=Methyloceanibacter TaxID=1484898 RepID=A0A0A8K956_9HYPH)

HSP 1 Score: 54.7 bits (130), Expect = 1.080e-8
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1
Query:   13 IESFCVDESGATAIEYALIASGIFMAIISVVGQVGSSLTGIFATV 147
            I+ F  DESGATAIEY LIA+GI +AII++V  VG +LTGIF  V
Sbjct:    4 IKRFINDESGATAIEYGLIAAGIAVAIITIVSTVGGTLTGIFTNV 48          
BLAST of mRNA_P-wetherbeei_contig20949.1.1 vs. uniprot
Match: UPI00190A2389 (Flp family type IVb pilin n=1 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=UPI00190A2389)

HSP 1 Score: 54.3 bits (129), Expect = 1.340e-8
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    1 MLGFIESFCVDESGATAIEYALIASGIFMAIISVVGQVGSSLTGIFATV 147
            M   +  F  DESGATAIEY LIA+GI +AII+VV Q+G+ L G FA++
Sbjct:    1 MKNLVSRFVKDESGATAIEYGLIAAGIALAIIAVVNQLGTQLNGKFASI 49          
BLAST of mRNA_P-wetherbeei_contig20949.1.1 vs. uniprot
Match: UPI0009F3BFD9 (Flp family type IVb pilin n=1 Tax=Candidatus Viadribacter manganicus TaxID=1759059 RepID=UPI0009F3BFD9)

HSP 1 Score: 53.9 bits (128), Expect = 1.820e-8
Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   13 IESFCVDESGATAIEYALIASGIFMAIISVVGQVGSSLTGIFATVAAG 156
            I  F  DE GATAIEYALIAS I + II+ VG VG SLTGIF   AAG
Sbjct:    2 ITRFLRDERGATAIEYALIASLIGLVIITAVGAVGDSLTGIFDDAAAG 49          
BLAST of mRNA_P-wetherbeei_contig20949.1.1 vs. uniprot
Match: A0A7Y8MBE7_9PROT (Flp family type IVb pilin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y8MBE7_9PROT)

HSP 1 Score: 53.9 bits (128), Expect = 1.910e-8
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 MLGFIESFCVDESGATAIEYALIASGIFMAIISVVGQVGSSLTGIFATVAAG 156
            M   I  FC DESGATAIEY LIA+GI +AII+ V  VG +L+ +F T  AG
Sbjct:    1 MRKLITRFCADESGATAIEYGLIAAGIAVAIIAAVQGVGGNLSTLFGTDIAG 52          
BLAST of mRNA_P-wetherbeei_contig20949.1.1 vs. uniprot
Match: A0A560L9P6_9BRAD (Pilus assembly protein Flp/PilA n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A560L9P6_9BRAD)

HSP 1 Score: 53.9 bits (128), Expect = 1.910e-8
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    1 MLGFIESFCVDESGATAIEYALIASGIFMAIISVVGQVGSSLTGIFATVA 150
            M  F   F  DESGATAIEY LIA+GI +AII+ V  VG++L+G F+T+A
Sbjct:    1 MKAFFVRFLRDESGATAIEYGLIATGIAIAIIAAVNGVGTNLSGTFSTIA 50          
BLAST of mRNA_P-wetherbeei_contig20949.1.1 vs. uniprot
Match: V4RFA7_9HYPH (Flp/Fap pilin component n=1 Tax=Lutibaculum baratangense AMV1 TaxID=631454 RepID=V4RFA7_9HYPH)

HSP 1 Score: 53.9 bits (128), Expect = 1.950e-8
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    1 MLGFIESFCVDESGATAIEYALIASGIFMAIISVVGQVGSSLTGIFATV 147
            M   I+ F  DESGATAIEY LIA+GI +AII +V  +G SLTG F +V
Sbjct:    1 MKALIQRFARDESGATAIEYGLIAAGISVAIIVIVNTLGESLTGTFTSV 49          
BLAST of mRNA_P-wetherbeei_contig20949.1.1 vs. uniprot
Match: UPI001BAD8A2D (Flp family type IVb pilin n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BAD8A2D)

HSP 1 Score: 53.5 bits (127), Expect = 2.710e-8
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    1 MLGFIESFCVDESGATAIEYALIASGIFMAIISVVGQVGSSLTGIFATV 147
            M  F+  F  DESGATAIEY LIA+GI +AII+ V  VG++L G F T+
Sbjct:    1 MKAFVVKFFQDESGATAIEYGLIAAGIAIAIITAVNGVGTALNGTFGTI 49          
BLAST of mRNA_P-wetherbeei_contig20949.1.1 vs. uniprot
Match: UPI001BAB8F6B (Flp family type IVb pilin n=1 Tax=Bradyrhizobium jicamae TaxID=280332 RepID=UPI001BAB8F6B)

HSP 1 Score: 53.5 bits (127), Expect = 2.710e-8
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 MLGFIESFCVDESGATAIEYALIASGIFMAIISVVGQVGSSLTGIFATV 147
            M  FI  F  DESGATAIEY LIA+GI +AII+ V  VG++L+G F+T+
Sbjct:    1 MRTFIVRFLRDESGATAIEYGLIATGIAIAIIAAVNGVGTALSGTFSTI 49          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20949.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001BA53E1B6.650e-957.14Flp family type IVb pilin n=1 Tax=Bradyrhizobium l... [more]
UPI001E38EE8D9.450e-953.06Flp family type IVb pilin n=1 Tax=Bradyrhizobium o... [more]
A0A0A8K956_9HYPH1.080e-864.44Flp pilus assembly protein, pilin Flp n=2 Tax=Meth... [more]
UPI00190A23891.340e-857.14Flp family type IVb pilin n=1 Tax=Bradyrhizobium d... [more]
UPI0009F3BFD91.820e-866.67Flp family type IVb pilin n=1 Tax=Candidatus Viadr... [more]
A0A7Y8MBE7_9PROT1.910e-857.69Flp family type IVb pilin n=1 Tax=Alphaproteobacte... [more]
A0A560L9P6_9BRAD1.910e-858.00Pilus assembly protein Flp/PilA n=3 Tax=Bradyrhizo... [more]
V4RFA7_9HYPH1.950e-859.18Flp/Fap pilin component n=1 Tax=Lutibaculum barata... [more]
UPI001BAD8A2D2.710e-857.14Flp family type IVb pilin n=1 Tax=Bradyrhizobium l... [more]
UPI001BAB8F6B2.710e-859.18Flp family type IVb pilin n=1 Tax=Bradyrhizobium j... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20949contigP-wetherbeei_contig20949:188..352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog631454.N177_2149
PFAMsFlp_Fap
Model size165
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue3.2e-09
EggNOG OGsCOG3847@1|root,COG3847@2|Bacteria,1Q6V6@1224|Proteobacteria,2VCXV@28211|Alphaproteobacteria,1JQJB@119043|Rhodobiaceae
DescriptionFlp/Fap pilin component
Cds size165
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186212.5559995-CDS-P-wetherbeei_contig20949:187..3521683186212.5559995-CDS-P-wetherbeei_contig20949:187..352Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20949 188..352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20949.1.1prot_P-wetherbeei_contig20949.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20949 188..352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20949.1.1

>prot_P-wetherbeei_contig20949.1.1 ID=prot_P-wetherbeei_contig20949.1.1|Name=mRNA_P-wetherbeei_contig20949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
MLGFIESFCVDESGATAIEYALIASGIFMAIISVVGQVGSSLTGIFATVA
AGFH*
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mRNA from alignment at P-wetherbeei_contig20949:188..352-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20949.1.1 ID=mRNA_P-wetherbeei_contig20949.1.1|Name=mRNA_P-wetherbeei_contig20949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig20949:188..352- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGGGTTCATTGAAAGTTTCTGTGTCGATGAGAGCGGCGCCACGGC TATCGAGTATGCACTCATTGCTTCCGGTATCTTCATGGCCATCATTTCGG TCGTGGGCCAGGTCGGCTCCAGTCTGACCGGTATCTTCGCAACGGTTGCG GCCGGATTTCATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20949:188..352-

>mRNA_P-wetherbeei_contig20949.1.1 ID=mRNA_P-wetherbeei_contig20949.1.1|Name=mRNA_P-wetherbeei_contig20949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig20949:188..352- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGGGTTCATTGAAAGTTTCTGTGTCGATGAGAGCGGCGCCACGGC
TATCGAGTATGCACTCATTGCTTCCGGTATCTTCATGGCCATCATTTCGG
TCGTGGGCCAGGTCGGCTCCAGTCTGACCGGTATCTTCGCAACGGTTGCG
GCCGGATTTCATTGA
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