mRNA_P-wetherbeei_contig2093.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2093.2.1
Unique NamemRNA_P-wetherbeei_contig2093.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2093.2.1 vs. uniprot
Match: A0A418AYS4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AYS4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.000e-10
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 WYNVRKEIYRGRQLRCFFCRDAGREEKAQRGATIGCDVSSCQVASHLGCALSHG 162
            WYNV KE+ RGR L+CF C         Q+GATIGC+  SC+V  HL C + HG
Sbjct:  566 WYNVAKELRRGRLLKCFHC--------GQKGATIGCNTESCKVTIHLPCGMVHG 611
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BLAST of mRNA_P-wetherbeei_contig2093.2.1 vs. uniprot
Match: A0A024U5Z5_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U5Z5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.000e-10
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 WYNVRKEIYRGRQLRCFFCRDAGREEKAQRGATIGCDVSSCQVASHLGCALSHG 162
            WYNV KE+ RGR L+CF C         Q+GATIGC+  SC+V  HL C + HG
Sbjct: 1130 WYNVAKELRRGRLLKCFHC--------GQKGATIGCNTESCKVTIHLPCGMVHG 1175
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BLAST of mRNA_P-wetherbeei_contig2093.2.1 vs. uniprot
Match: A0A6G0XRZ7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRZ7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.020e-9
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 WYNVRKEIYRGRQLRCFFCRDAGREEKAQRGATIGCDVSSCQVASHLGCALSHG 162
            WYNV KE+ RGR L+CF C         QRGATIGC++ SC+V  HL C + +G
Sbjct: 1098 WYNVAKELRRGRLLKCFHC--------GQRGATIGCNMESCKVTIHLPCGMVNG 1143
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BLAST of mRNA_P-wetherbeei_contig2093.2.1 vs. uniprot
Match: A0A6A5A6S8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A6S8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.870e-9
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 WYNVRKEIYRGRQLRCFFCRDAGREEKAQRGATIGCDVSSCQVASHLGCALSHG 162
            WYNV KE+ RGR L+CF C         Q+GATIGC+  SC+V  HL C +  G
Sbjct:  327 WYNVAKELRRGRLLKCFHC--------GQKGATIGCNTESCKVTIHLPCGMVQG 372
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BLAST of mRNA_P-wetherbeei_contig2093.2.1 vs. uniprot
Match: W4FU93_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FU93_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.890e-9
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 WYNVRKEIYRGRQLRCFFCRDAGREEKAQRGATIGCDVSSCQVASHLGCALSHG 162
            WYNV KE+ RGR L+CF C         Q+GATIGC+  SC+V  HL C +  G
Sbjct: 1136 WYNVAKELRRGRLLKCFHC--------GQKGATIGCNTESCKVTIHLPCGMVQG 1181
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BLAST of mRNA_P-wetherbeei_contig2093.2.1 vs. uniprot
Match: A0A485KTR4_9STRA (Aste57867_11528 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTR4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.890e-9
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 WYNVRKEIYRGRQLRCFFCRDAGREEKAQRGATIGCDVSSCQVASHLGCALSHG 162
            WYNV KE+ RGR L+CF C          +GATIGC+  SC+V  HL C + HG
Sbjct: 1122 WYNVAKELRRGRFLKCFHC--------GLKGATIGCNTESCKVTIHLPCGMVHG 1167
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BLAST of mRNA_P-wetherbeei_contig2093.2.1 vs. uniprot
Match: A0A1V9YQJ7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQJ7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.250e-8
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 WYNVRKEIYRGRQLRCFFCRDAGREEKAQRGATIGCDVSSCQVASHLGCALSHG 162
            WYN+ KE+ RGR L+C  C        AQ+GATIGC+ S+C+V  H  CA++ G
Sbjct: 1181 WYNIAKELRRGRTLKCTAC--------AQKGATIGCNYSACKVTMHFQCAMATG 1226
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BLAST of mRNA_P-wetherbeei_contig2093.2.1 vs. uniprot
Match: A0A7S2GRU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GRU6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.880e-8
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 WYNVRKEIYRGRQLRCFFCRDAGREEKAQRGATIGCDVSSCQVASHLGCALS-HG 162
            W+NVR+ + RG+QL+C  C         +RGAT+GC V SC+V +H+ CA++ HG
Sbjct:   17 WFNVRRAVRRGKQLKCSHC--------GKRGATLGCSVPSCRVNTHVPCAVAGHG 63
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BLAST of mRNA_P-wetherbeei_contig2093.2.1 vs. uniprot
Match: A0A0P1A932_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A932_PLAHL)

HSP 1 Score: 55.5 bits (132), Expect = 1.530e-7
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 WYNVRKEIYRGRQLRCFFCRDAGREEKAQRGATIGCDVSSCQVASHLGCALSHG 162
            WYNV +EI RGR L C  C         +RGATIGC +S+CQ + H  CA+++G
Sbjct: 1336 WYNVTREIRRGRALLCVACN--------KRGATIGCTISACQNSYHWKCAINYG 1381
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BLAST of mRNA_P-wetherbeei_contig2093.2.1 vs. uniprot
Match: A0A6A3MDY0_9STRA (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MDY0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.920e-7
Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 WYNVRKEIYRGRQLRCFFCRDAGREEKAQRGATIGCDVSSCQVASHLGCALSHG 162
            WYNV KEI RGR L C  C         +RGATIGC ++SC+ + H  CA++ G
Sbjct: 1412 WYNVSKEIRRGRSLTCVGCN--------KRGATIGCTIASCRNSYHWKCAINFG 1457
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2093.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A418AYS4_9STRA4.000e-1051.85Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024U5Z5_9STRA4.000e-1051.85Uncharacterized protein n=4 Tax=Aphanomyces invada... [more]
A0A6G0XRZ7_9STRA1.020e-951.85Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A5A6S8_9STRA4.870e-950.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FU93_9STRA4.890e-950.00Uncharacterized protein n=8 Tax=Aphanomyces astaci... [more]
A0A485KTR4_9STRA4.890e-950.00Aste57867_11528 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9YQJ7_9STRA1.250e-848.15Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2GRU6_9STRA5.880e-845.45Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A0P1A932_PLAHL1.530e-748.15Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A6A3MDY0_9STRA3.920e-748.15Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2093contigP-wetherbeei_contig2093:976..1137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008869493.1
Preferred nameBRD7
PFAMsBromodomain,DUF3512,WD40
Model size162
Max annot lvl2759|Eukaryota
KEGG koko:K11723,ko:K11798,ko:K22184
KEGG Pathwayko05225,map05225
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000902,GO:0001067,GO:0002039,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006996,GO:0007010,GO:0007275,GO:0007346,GO:0007399,GO:0008134,GO:0008150,GO:0008285,GO:0008360,GO:0009653,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010948,GO:0016043,GO:0019219,GO:0019222,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0030030,GO:0030154,GO:0030182,GO:0031056,GO:0031058,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033043,GO:0033044,GO:0035065,GO:0035066,GO:0042127,GO:0042393,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044212,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045786,GO:0045892,GO:0045893,GO:0045930,GO:0045934,GO:0045935,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051726,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0071840,GO:0080090,GO:0097159,GO:0120036,GO:0120039,GO:0140030,GO:0140033,GO:0140110,GO:1901363,GO:1901796,GO:1901983,GO:1901985,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902275,GO:1902531,GO:1902679,GO:1902680,GO:1902806,GO:1902807,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000756,GO:2000758,GO:2001141,GO:2001252
Exons1
Evalue6.56e-11
EggNOG OGsCOG2319@1|root,COG2940@1|root,KOG1828@1|root,KOG0644@2759|Eukaryota,KOG1084@2759|Eukaryota,KOG1828@2759|Eukaryota
Descriptionacetylation-dependent protein binding
Cds size162
COG categoryL
BRITEko00000,ko00001,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186212.287143-CDS-P-wetherbeei_contig2093:975..11371683186212.287143-CDS-P-wetherbeei_contig2093:975..1137Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2093 976..1137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2093.2.1prot_P-wetherbeei_contig2093.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2093 976..1137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2093.2.1

>prot_P-wetherbeei_contig2093.2.1 ID=prot_P-wetherbeei_contig2093.2.1|Name=mRNA_P-wetherbeei_contig2093.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=54bp
WYNVRKEIYRGRQLRCFFCRDAGREEKAQRGATIGCDVSSCQVASHLGCA
LSHG
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mRNA from alignment at P-wetherbeei_contig2093:976..1137-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2093.2.1 ID=mRNA_P-wetherbeei_contig2093.2.1|Name=mRNA_P-wetherbeei_contig2093.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig2093:976..1137- (Phaeothamnion wetherbeei SAG_119_79)
TGGTATAATGTCCGCAAAGAGATTTACCGCGGCCGCCAGCTCCGCTGCTT
CTTCTGCCGCGATGCCGGGCGCGAGGAAAAGGCGCAGCGCGGCGCCACTA
TCGGCTGCGACGTTTCCTCCTGCCAAGTCGCGTCTCACCTTGGCTGCGCG
CTTTCGCATGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2093:976..1137-

>mRNA_P-wetherbeei_contig2093.2.1 ID=mRNA_P-wetherbeei_contig2093.2.1|Name=mRNA_P-wetherbeei_contig2093.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig2093:976..1137- (Phaeothamnion wetherbeei SAG_119_79)
TGGTATAATGTCCGCAAAGAGATTTACCGCGGCCGCCAGCTCCGCTGCTT
CTTCTGCCGCGATGCCGGGCGCGAGGAAAAGGCGCAGCGCGGCGCCACTA
TCGGCTGCGACGTTTCCTCCTGCCAAGTCGCGTCTCACCTTGGCTGCGCG
CTTTCGCATGGC
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