mRNA_P-wetherbeei_contig2093.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2093.1.1
Unique NamemRNA_P-wetherbeei_contig2093.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig2093.1.1 vs. uniprot
Match: A0A3P8VDA3_CYNSE (Histone-lysine N-methyltransferase SETDB2 n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8VDA3_CYNSE)

HSP 1 Score: 66.6 bits (161), Expect = 8.110e-11
Identity = 41/96 (42.71%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:    1 HAAGVRRDCERAKACCQCWPGPCDNPKKCACIR---RGRAYGERKGSGEPKLLENAPRLIYECGVNCPCRSRGDRS-CGNRLVQFGLRQKLEVFCT 276
            H   + R+     ACC C  G C +P++CACI    RGR Y   +      L+E  P  +YECG  C C    DRS C NRLVQ G+R +L+VF T
Sbjct:  238 HGCFLSRNPSLFNACCDCVDG-CTDPQRCACIALTMRGRHYIHHR------LMEPVPSGVYECGPWCSC----DRSLCQNRLVQRGIRIRLQVFQT 322
[Close]
BLAST of mRNA_P-wetherbeei_contig2093.1.1 vs. uniprot
Match: A0A3P8VD86_CYNSE (Histone-lysine N-methyltransferase SETDB2 n=2 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8VD86_CYNSE)

HSP 1 Score: 66.6 bits (161), Expect = 8.160e-11
Identity = 41/96 (42.71%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:    1 HAAGVRRDCERAKACCQCWPGPCDNPKKCACIR---RGRAYGERKGSGEPKLLENAPRLIYECGVNCPCRSRGDRS-CGNRLVQFGLRQKLEVFCT 276
            H   + R+     ACC C  G C +P++CACI    RGR Y   +      L+E  P  +YECG  C C    DRS C NRLVQ G+R +L+VF T
Sbjct:  273 HGCFLSRNPSLFNACCDCVDG-CTDPQRCACIALTMRGRHYIHHR------LMEPVPSGVYECGPWCSC----DRSLCQNRLVQRGIRIRLQVFQT 357
[Close]
BLAST of mRNA_P-wetherbeei_contig2093.1.1 vs. uniprot
Match: A0A1A8R3I3_9TELE (SET domain, bifurcated 2 (Fragment) n=1 Tax=Nothobranchius pienaari TaxID=704102 RepID=A0A1A8R3I3_9TELE)

HSP 1 Score: 63.5 bits (153), Expect = 8.660e-10
Identity = 40/96 (41.67%), Postives = 49/96 (51.04%), Query Frame = 1 
Query:    1 HAAGVRRDCERAKACCQCWPGPCDNPKKCACIRR---GRAYGERKGSGEPKLLENAPRLIYECGVNCPC-RSRGDRSCGNRLVQFGLRQKLEVFCT 276
            H   + R     + CC C  G C + K CAC+     GR Y  ++      LLE  P  +YECG  C C RSR    C NRLVQ GLR +L+VF T
Sbjct:  206 HGCFLSRGPALFRVCCDCTDG-CSDAKHCACVAMTTGGRGYSHQR------LLEPVPSGLYECGPWCGCVRSR----CQNRLVQRGLRVRLQVFQT 290
[Close]
BLAST of mRNA_P-wetherbeei_contig2093.1.1 vs. uniprot
Match: A0A1A8B191_NOTFU (SET domain, bifurcated 2 n=11 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8B191_NOTFU)

HSP 1 Score: 63.5 bits (153), Expect = 9.890e-10
Identity = 40/96 (41.67%), Postives = 49/96 (51.04%), Query Frame = 1 
Query:    1 HAAGVRRDCERAKACCQCWPGPCDNPKKCACIRR---GRAYGERKGSGEPKLLENAPRLIYECGVNCPC-RSRGDRSCGNRLVQFGLRQKLEVFCT 276
            H   + R     + CC C  G C + K CAC+     GR Y  ++      LLE  P  +YECG  C C RSR    C NRLVQ GLR +L+VF T
Sbjct:  284 HGCFLSRGPALFRVCCDCTDG-CSDAKHCACVAMTTGGRGYSHQR------LLEPVPSGLYECGPWCGCVRSR----CQNRLVQRGLRVRLQVFQT 368
[Close]
BLAST of mRNA_P-wetherbeei_contig2093.1.1 vs. uniprot
Match: A0A3Q4N8G8_NEOBR (Uncharacterized protein n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4N8G8_NEOBR)

HSP 1 Score: 62.0 bits (149), Expect = 3.380e-9
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 1 
Query:    1 HAAGVRRDCERAKACCQCWPGPCDNPKKCACIRRGRAYGERKGSGEPKLLENAPRLIYECGVNCPCRSRGDRS-CGNRLVQFGLRQKLEVFCT 276
            H   + R  +  KACC C  G C + K+CAC+      GER      +LL+  P  ++ECG  C C    DRS C NRLVQ G+R +L+VF T
Sbjct:  205 HGCFLSRGPKLFKACCDCTDG-CSDAKRCACV--ALTSGERHYRHH-RLLQANPSGLFECGPWCGC----DRSRCQNRLVQRGIRVRLQVFQT 289
[Close]
BLAST of mRNA_P-wetherbeei_contig2093.1.1 vs. uniprot
Match: A0A3Q4I6K7_NEOBR (Uncharacterized protein n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4I6K7_NEOBR)

HSP 1 Score: 62.0 bits (149), Expect = 3.380e-9
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 1 
Query:    1 HAAGVRRDCERAKACCQCWPGPCDNPKKCACIRRGRAYGERKGSGEPKLLENAPRLIYECGVNCPCRSRGDRS-CGNRLVQFGLRQKLEVFCT 276
            H   + R  +  KACC C  G C + K+CAC+      GER      +LL+  P  ++ECG  C C    DRS C NRLVQ G+R +L+VF T
Sbjct:  234 HGCFLSRGPKLFKACCDCTDG-CSDAKRCACV--ALTSGERHYRHH-RLLQANPSGLFECGPWCGC----DRSRCQNRLVQRGIRVRLQVFQT 318
[Close]
BLAST of mRNA_P-wetherbeei_contig2093.1.1 vs. uniprot
Match: UPI001ED85DEE (histone-lysine N-methyltransferase SETDB2 isoform X1 n=2 Tax=Scatophagus argus TaxID=75038 RepID=UPI001ED85DEE)

HSP 1 Score: 61.6 bits (148), Expect = 4.720e-9
Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:    1 HAAGVRRDCERAKACCQCWPGPCDNPKKCACIRRGRAYGERKGSGEPKLLENAPRLIYECGVNCPCRSRGDRS-CGNRLVQFGLRQKLEVFCT 276
            H   + RD     ACC C  G C + ++CAC+   R  GER      +L E  P  +YECG  C C    DR+ C NRLVQ G+R +L+VF T
Sbjct:  307 HGCFLSRDPTLFSACCDCTDG-CTDARRCACVAMTR--GERHYRHH-RLDEPVPSGVYECGPWCGC----DRARCQNRLVQRGIRVRLQVFQT 391
[Close]
BLAST of mRNA_P-wetherbeei_contig2093.1.1 vs. uniprot
Match: UPI0009B31AAD (histone-lysine N-methyltransferase SETDB2-like isoform X1 n=2 Tax=Labrus bergylta TaxID=56723 RepID=UPI0009B31AAD)

HSP 1 Score: 61.2 bits (147), Expect = 6.430e-9
Identity = 38/96 (39.58%), Postives = 48/96 (50.00%), Query Frame = 1 
Query:    1 HAAGVRRDCERAKACCQCWPGPCDNPKKCACIR---RGRAYGERKGSGEPKLLENAPRLIYECGVNCPCRSRGDRS-CGNRLVQFGLRQKLEVFCT 276
            H   + R     KACC C  G C + + CAC+     GR Y   +      L E  P  +YECG  C C    DR+ C NRLVQ G+R +L+VF T
Sbjct:  285 HGCFLSRGTTLFKACCDCTDG-CSSAQNCACVAMTTEGRRYSHNR------LDEPVPSGVYECGPWCGC----DRARCQNRLVQRGIRVRLQVFQT 369
[Close]
BLAST of mRNA_P-wetherbeei_contig2093.1.1 vs. uniprot
Match: UPI00189A93DA (histone-lysine N-methyltransferase SETDB2 n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI00189A93DA)

HSP 1 Score: 61.2 bits (147), Expect = 6.430e-9
Identity = 39/96 (40.62%), Postives = 49/96 (51.04%), Query Frame = 1 
Query:    1 HAAGVRRDCERAKACCQCWPGPCDNPKKCACIRR---GRAYGERKGSGEPKLLENAPRLIYECGVNCPCRSRGDRS-CGNRLVQFGLRQKLEVFCT 276
            H   + R  +  + CC C  G C +  +CACI     GR Y   +      LLE  P  +YECG  C C    DRS C NRLVQ G+R +L+VF T
Sbjct:  290 HGCFLSRGPKLFRVCCDCDDG-CRDADRCACIAMVTDGRGYSHHR------LLEPVPSGLYECGPWCGC----DRSHCQNRLVQRGIRVRLQVFQT 374
[Close]
BLAST of mRNA_P-wetherbeei_contig2093.1.1 vs. uniprot
Match: A0A671UH39_SPAAU (Uncharacterized protein n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671UH39_SPAAU)

HSP 1 Score: 60.8 bits (146), Expect = 8.680e-9
Identity = 38/96 (39.58%), Postives = 49/96 (51.04%), Query Frame = 1 
Query:    1 HAAGVRRDCERAKACCQCWPGPCDNPKKCACI---RRGRAYGERKGSGEPKLLENAPRLIYECGVNCPCRSRGDRS-CGNRLVQFGLRQKLEVFCT 276
            H   + R       CC C  G C +P++CAC+   R GR Y   +      L E  P  +YECG  C C    DR+ C NRLVQ G+R +L+VF T
Sbjct:  214 HGCFLSRGPTLFNVCCDCTDG-CSDPQRCACVATTRGGRHYSHYR------LDEPVPSGVYECGPWCGC----DRARCQNRLVQRGIRIRLQVFQT 298
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2093.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3P8VDA3_CYNSE8.110e-1142.71Histone-lysine N-methyltransferase SETDB2 n=1 Tax=... [more]
A0A3P8VD86_CYNSE8.160e-1142.71Histone-lysine N-methyltransferase SETDB2 n=2 Tax=... [more]
A0A1A8R3I3_9TELE8.660e-1041.67SET domain, bifurcated 2 (Fragment) n=1 Tax=Nothob... [more]
A0A1A8B191_NOTFU9.890e-1041.67SET domain, bifurcated 2 n=11 Tax=Nothobranchius T... [more]
A0A3Q4N8G8_NEOBR3.380e-941.94Uncharacterized protein n=1 Tax=Neolamprologus bri... [more]
A0A3Q4I6K7_NEOBR3.380e-941.94Uncharacterized protein n=1 Tax=Neolamprologus bri... [more]
UPI001ED85DEE4.720e-941.94histone-lysine N-methyltransferase SETDB2 isoform ... [more]
UPI0009B31AAD6.430e-939.58histone-lysine N-methyltransferase SETDB2-like iso... [more]
UPI00189A93DA6.430e-940.63histone-lysine N-methyltransferase SETDB2 n=1 Tax=... [more]
A0A671UH39_SPAAU8.680e-939.58Uncharacterized protein n=1 Tax=Sparus aurata TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2093contigP-wetherbeei_contig2093:190..465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog244447.XP_008323601.1
Preferred nameSETDB2
PFAMsMBD,Pre-SET,SET
Model size276
Max annot lvl33208|Metazoa
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K18494
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0001947,GO:0002009,GO:0003002,GO:0003007,GO:0003143,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009653,GO:0009790,GO:0009798,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0035050,GO:0035239,GO:0035295,GO:0036211,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0046974,GO:0048513,GO:0048519,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051567,GO:0060255,GO:0060429,GO:0060562,GO:0060972,GO:0061371,GO:0061647,GO:0065007,GO:0070013,GO:0070986,GO:0071704,GO:0071840,GO:0072359,GO:0080090,GO:0140096,GO:1901564,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue1.34e-11
EggNOG OGsCOG2940@1|root,KOG1141@2759|Eukaryota,38JG6@33154|Opisthokonta,3BDE3@33208|Metazoa,3CXN9@33213|Bilateria,484X2@7711|Chordata,4914T@7742|Vertebrata,49VHI@7898|Actinopterygii
EC2.1.1.43
DescriptionSET domain, bifurcated 2
Cds size276
COG categoryB
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186212.2535048-CDS-P-wetherbeei_contig2093:189..4651683186212.2535048-CDS-P-wetherbeei_contig2093:189..465Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2093 190..465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2093.1.1prot_P-wetherbeei_contig2093.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2093 190..465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2093.1.1

>prot_P-wetherbeei_contig2093.1.1 ID=prot_P-wetherbeei_contig2093.1.1|Name=mRNA_P-wetherbeei_contig2093.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
HAAGVRRDCERAKACCQCWPGPCDNPKKCACIRRGRAYGERKGSGEPKLL
ENAPRLIYECGVNCPCRSRGDRSCGNRLVQFGLRQKLEVFCT
back to top

mRNA from alignment at P-wetherbeei_contig2093:190..465-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2093.1.1 ID=mRNA_P-wetherbeei_contig2093.1.1|Name=mRNA_P-wetherbeei_contig2093.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig2093:190..465- (Phaeothamnion wetherbeei SAG_119_79)
CACGCCGCCGGGGTCCGCCGCGACTGCGAGCGCGCTAAGGCCTGCTGCCA
GTGCTGGCCAGGCCCCTGTGACAACCCGAAGAAGTGCGCGTGCATCCGGC
GGGGACGCGCATATGGCGAGCGTAAGGGCAGCGGCGAGCCCAAGCTGCTC
GAAAACGCCCCGAGGCTCATCTACGAGTGCGGCGTCAACTGTCCGTGTCG
CAGCCGTGGTGACCGCAGCTGCGGCAACCGCCTCGTGCAGTTCGGGCTGC
GCCAGAAGCTCGAGGTGTTTTGCACG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig2093:190..465-

>mRNA_P-wetherbeei_contig2093.1.1 ID=mRNA_P-wetherbeei_contig2093.1.1|Name=mRNA_P-wetherbeei_contig2093.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig2093:190..465- (Phaeothamnion wetherbeei SAG_119_79)
CACGCCGCCGGGGTCCGCCGCGACTGCGAGCGCGCTAAGGCCTGCTGCCA
GTGCTGGCCAGGCCCCTGTGACAACCCGAAGAAGTGCGCGTGCATCCGGC
GGGGACGCGCATATGGCGAGCGTAAGGGCAGCGGCGAGCCCAAGCTGCTC
GAAAACGCCCCGAGGCTCATCTACGAGTGCGGCGTCAACTGTCCGTGTCG
CAGCCGTGGTGACCGCAGCTGCGGCAACCGCCTCGTGCAGTTCGGGCTGC
GCCAGAAGCTCGAGGTGTTTTGCACG
back to top