mRNA_P-wetherbeei_contig20919.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig20919.2.1
Unique Name	mRNA_P-wetherbeei_contig20919.2.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

[Close]

BLAST of mRNA_P-wetherbeei_contig20919.2.1 vs. uniprot
Match: A0A1F3AF66_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1F3AF66_9PROT)

HSP 1 Score: 217 bits (552), Expect = 2.280e-70
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 1

Query:    1 VIDAEFSRSGDPHYFWTEHVSAADSEVALTWYDVGDPLLIHTNPNEAPNPRPYGVCTVLVPALGARLTVDGIQAKGLPWKREREGRPFSTCALAFSESWTEAR 309
            VIDAEF+RSGDP YFWTEHVSAADSEVALTWYD+GDPLLIHTNPNEAPNPRPYGVCTVLVPALGARLTVDG QAKGLPWKREREGRPFSTCALAFSESWTEAR
Sbjct:   91 VIDAEFTRSGDPRYFWTEHVSAADSEVALTWYDIGDPLLIHTNPNEAPNPRPYGVCTVLVPALGARLTVDGTQAKGLPWKREREGRPFSTCALAFSESWTEAR 193

[Close]

BLAST of mRNA_P-wetherbeei_contig20919.2.1 vs. uniprot
Match: A0A537N683_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537N683_9PROT)

HSP 1 Score: 195 bits (495), Expect = 1.080e-61
Identity = 86/103 (83.50%), Postives = 95/103 (92.23%), Query Frame = 1

Query:    1 VIDAEFSRSGDPHYFWTEHVSAADSEVALTWYDVGDPLLIHTNPNEAPNPRPYGVCTVLVPALGARLTVDGIQAKGLPWKREREGRPFSTCALAFSESWTEAR 309
            V DA F++SGDP YFWTEHVSAADSEVALTWYD+G+PLLIHT PN+ PNPRPYGVCT+L+PALGARLTVDG +AKG PWKREREG+PFSTCALAFSESWTE R
Sbjct:   91 VTDATFTKSGDPRYFWTEHVSAADSEVALTWYDIGEPLLIHTQPNQPPNPRPYGVCTLLIPALGARLTVDGKEAKGHPWKREREGQPFSTCALAFSESWTEPR 193

[Close]

BLAST of mRNA_P-wetherbeei_contig20919.2.1 vs. uniprot
Match: A0A0U2YQQ7_9BACT (Capsule biosynthesis GfcC n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A0U2YQQ7_9BACT)

HSP 1 Score: 187 bits (475), Expect = 1.190e-58
Identity = 81/103 (78.64%), Postives = 93/103 (90.29%), Query Frame = 1

Query:    1 VIDAEFSRSGDPHYFWTEHVSAADSEVALTWYDVGDPLLIHTNPNEAPNPRPYGVCTVLVPALGARLTVDGIQAKGLPWKREREGRPFSTCALAFSESWTEAR 309
            V DA FS+SGDP YFWTEHVSA D+E+ALTWYD+G+PLLIHT PN+ PN RPYGVCT+L+PALGA+LT++G QAKG PWKREREG+PFSTCALAFSESWTE R
Sbjct:   91 VTDASFSKSGDPRYFWTEHVSATDAEIALTWYDIGEPLLIHTQPNQPPNARPYGVCTLLIPALGAQLTLNGQQAKGQPWKREREGQPFSTCALAFSESWTEPR 193

[Close]

BLAST of mRNA_P-wetherbeei_contig20919.2.1 vs. uniprot
Match: A0A259MVE6_9PROT (Uncharacterized protein n=8 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MVE6_9PROT)

HSP 1 Score: 185 bits (470), Expect = 6.840e-58
Identity = 82/103 (79.61%), Postives = 93/103 (90.29%), Query Frame = 1

Query:    1 VIDAEFSRSGDPHYFWTEHVSAADSEVALTWYDVGDPLLIHTNPNEAPNPRPYGVCTVLVPALGARLTVDGIQAKGLPWKREREGRPFSTCALAFSESWTEAR 309
            VIDA+FS+SGDP YFWTE+VSAAD+E+ALTW+D+GDPLLIHT PN+ PNPRPYGVCTVLVPAL  RLT++G QA+G PW REREGRPFST ALAFSESWTE R
Sbjct:   91 VIDADFSKSGDPRYFWTEYVSAADAEIALTWHDIGDPLLIHTEPNQEPNPRPYGVCTVLVPALSGRLTLNGQQARGKPWPREREGRPFSTSALAFSESWTEPR 193

[Close]

BLAST of mRNA_P-wetherbeei_contig20919.2.1 vs. uniprot
Match: A0A1H8LF91_9PROT (Uncharacterized protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8LF91_9PROT)

HSP 1 Score: 181 bits (458), Expect = 4.560e-56
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 1

Query:    1 VIDAEFSRSGDPHYFWTEHVSAADSEVALTWYDVGDPLLIHTNPNEAPNPRPYGVCTVLVPALGARLTVDGIQAKGLPWKREREGRPFSTCALAFSESWTEAR 309
            VIDA FS+SGDP YFWTEH+ A  +++A+TWYD+G+PLLIHT PN+ P  R YGVCTVLVPA+GARLT++G QA+G PWKR+REGRPFSTCALAFSESWTEAR
Sbjct:   91 VIDASFSKSGDPRYFWTEHIKAHGADIAMTWYDIGEPLLIHTEPNQPPQNRQYGVCTVLVPAMGARLTINGNQARGTPWKRDREGRPFSTCALAFSESWTEAR 193

[Close]

BLAST of mRNA_P-wetherbeei_contig20919.2.1 vs. uniprot
Match: A0A5C5SA62_9HYPH (Uncharacterized protein n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5SA62_9HYPH)

HSP 1 Score: 179 bits (453), Expect = 2.550e-55
Identity = 80/103 (77.67%), Postives = 88/103 (85.44%), Query Frame = 1

Query:    1 VIDAEFSRSGDPHYFWTEHVSAADSEVALTWYDVGDPLLIHTNPNEAPNPRPYGVCTVLVPALGARLTVDGIQAKGLPWKREREGRPFSTCALAFSESWTEAR 309
            V DA F +SGDPHYFWTEHVSA   E+ALTW+D+GDPLLIHT PN  P  RPYGVCTVL+P+L ARLT +G+QAKG PW REREGRPFSTCALAFSESWTEAR
Sbjct:   91 VTDATFDKSGDPHYFWTEHVSAPGEEIALTWHDIGDPLLIHTQPNATPG-RPYGVCTVLIPSLAARLTRNGVQAKGSPWAREREGRPFSTCALAFSESWTEAR 192

[Close]

BLAST of mRNA_P-wetherbeei_contig20919.2.1 vs. uniprot
Match: A0A5C8PRV5_9HYPH (Uncharacterized protein n=2 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PRV5_9HYPH)

HSP 1 Score: 171 bits (434), Expect = 2.290e-52
Identity = 76/103 (73.79%), Postives = 87/103 (84.47%), Query Frame = 1

Query:    1 VIDAEFSRSGDPHYFWTEHVSAADSEVALTWYDVGDPLLIHTNPNEAPNPRPYGVCTVLVPALGARLTVDGIQAKGLPWKREREGRPFSTCALAFSESWTEAR 309
             +DA FS++GDP YFWTE V+A D ++ LTW+D+GDPLLIHT PN  P  RPYGVCTVLVPAL ARL+ +G+ AKGLPW REREGRPFSTCALAFSESWTEAR
Sbjct:   96 AVDATFSKTGDPRYFWTERVAARDEDINLTWHDIGDPLLIHTQPNATPG-RPYGVCTVLVPALAARLSRNGVDAKGLPWPREREGRPFSTCALAFSESWTEAR 197

[Close]

BLAST of mRNA_P-wetherbeei_contig20919.2.1 vs. uniprot
Match: A0A537S164_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537S164_9PROT)

HSP 1 Score: 169 bits (427), Expect = 2.650e-51
Identity = 79/103 (76.70%), Postives = 84/103 (81.55%), Query Frame = 1

Query:    1 VIDAEFSRSGDPHYFWTEHVSAADSEVALTWYDVGDPLLIHTNPNEAPNPRPYGVCTVLVPALGARLTVDGIQAKGLPWKREREGRPFSTCALAFSESWTEAR 309
            V DAEFS+SGDP YFWTE   A   EV LTWYD+GDPLLIHT P   P  RPYGVCTVLVPALGARL+ +GIQA G PWKREREGRPFST ALAFSESWT+AR
Sbjct:   96 VTDAEFSKSGDPRYFWTERAVARGEEVTLTWYDIGDPLLIHTQPKAVPG-RPYGVCTVLVPALGARLSRNGIQAAGKPWKREREGRPFSTSALAFSESWTDAR 197

[Close]

BLAST of mRNA_P-wetherbeei_contig20919.2.1 vs. uniprot
Match: A0A537R749_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537R749_9PROT)

HSP 1 Score: 167 bits (422), Expect = 1.270e-50
Identity = 73/103 (70.87%), Postives = 86/103 (83.50%), Query Frame = 1

Query:    1 VIDAEFSRSGDPHYFWTEHVSAADSEVALTWYDVGDPLLIHTNPNEAPNPRPYGVCTVLVPALGARLTVDGIQAKGLPWKREREGRPFSTCALAFSESWTEAR 309
            V +A+F++SGDP YFWTE V + D E+ LTWY +G+PLLIHT PN  P  RPYGVCT+L+PALGARLT +G++A G PW REREGRPFSTCALAFSESWTEAR
Sbjct:   90 VTEAQFTKSGDPRYFWTEGVKSRDEEIGLTWYQIGEPLLIHTQPNAEPG-RPYGVCTLLIPALGARLTRNGVEAAGRPWPREREGRPFSTCALAFSESWTEAR 191

[Close]

BLAST of mRNA_P-wetherbeei_contig20919.2.1 vs. uniprot
Match: UPI0016720DB9 (hypothetical protein n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI0016720DB9)

HSP 1 Score: 165 bits (417), Expect = 7.070e-50
Identity = 76/101 (75.25%), Postives = 84/101 (83.17%), Query Frame = 1

Query:    1 VIDAEFSRSGDPHYFWTEHVSAADSEVALTWYDVGDPLLIHTNPNEAPNPRPYGVCTVLVPALGARLTVDGIQAKGLPWKREREGRPFSTCALAFSESWTE 303
            V DAEFS+SGDP YFWTE + + D +V LTWYD GDPLLIHT PN+ P  RPYGVCTVL+PA GARLTV+G QA G P+ REREGRPFSTCALAFSESWTE
Sbjct:   91 VTDAEFSKSGDPRYFWTERLVSHDDDVELTWYDCGDPLLIHTQPNQTPG-RPYGVCTVLIPANGARLTVNGQQAAGTPFPREREGRPFSTCALAFSESWTE 190

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig20919.2.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig20919.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1F3AF66_9PROT	2.280e-70	96.12	Uncharacterized protein n=2 Tax=Alphaproteobacteri...	[more]
A0A537N683_9PROT	1.080e-61	83.50	Uncharacterized protein n=1 Tax=Alphaproteobacteri...	[more]
A0A0U2YQQ7_9BACT	1.190e-58	78.64	Capsule biosynthesis GfcC n=1 Tax=uncultured bacte...	[more]
A0A259MVE6_9PROT	6.840e-58	79.61	Uncharacterized protein n=8 Tax=Alphaproteobacteri...	[more]
A0A1H8LF91_9PROT	4.560e-56	74.76	Uncharacterized protein n=3 Tax=Alphaproteobacteri...	[more]
A0A5C5SA62_9HYPH	2.550e-55	77.67	Uncharacterized protein n=1 Tax=Reyranella sp. CPC...	[more]
A0A5C8PRV5_9HYPH	2.290e-52	73.79	Uncharacterized protein n=2 Tax=Vineibacter terrae...	[more]
A0A537S164_9PROT	2.650e-51	76.70	Uncharacterized protein n=1 Tax=Alphaproteobacteri...	[more]
A0A537R749_9PROT	1.270e-50	70.87	Uncharacterized protein n=1 Tax=Alphaproteobacteri...	[more]
UPI0016720DB9	7.070e-50	75.25	hypothetical protein n=1 Tax=Thalassobaculum fulvu...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig20919	contig	P-wetherbeei_contig20919:885..1196 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	1205680.CAKO01000037_gene1214
Model size	312
Max annot lvl	204441\|Rhodospirillales
Hectar predicted targeting category	other localisation
Exons	1
Evalue	1.3e-57
EggNOG OGs	2AGFQ@1\|root,2Z840@2\|Bacteria,1R7D5@1224\|Proteobacteria,2U574@28211\|Alphaproteobacteria,2JVSQ@204441\|Rhodospirillales
Cds size	312

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186212.0115955-CDS-P-wetherbeei_contig20919:884..1196	1683186212.0115955-CDS-P-wetherbeei_contig20919:884..1196	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig20919 885..1196 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig20919.2.1	prot_P-wetherbeei_contig20919.2.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig20919 885..1196 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig20919:885..1196-
coding sequence from alignment at P-wetherbeei_contig20919:885..1196-

protein sequence of mRNA_P-wetherbeei_contig20919.2.1

>prot_P-wetherbeei_contig20919.2.1 ID=prot_P-wetherbeei_contig20919.2.1|Name=mRNA_P-wetherbeei_contig20919.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
VIDAEFSRSGDPHYFWTEHVSAADSEVALTWYDVGDPLLIHTNPNEAPNP
RPYGVCTVLVPALGARLTVDGIQAKGLPWKREREGRPFSTCALAFSESWT
EAR*

mRNA from alignment at P-wetherbeei_contig20919:885..1196-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig20919.2.1 ID=mRNA_P-wetherbeei_contig20919.2.1|Name=mRNA_P-wetherbeei_contig20919.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig20919:885..1196- (Phaeothamnion wetherbeei SAG_119_79)
GTGATCGACGCCGAATTCTCGCGTTCGGGCGACCCGCACTATTTCTGGAC
CGAGCACGTCTCGGCGGCCGACTCCGAGGTGGCGCTCACCTGGTACGACG
TCGGCGATCCGCTGCTGATCCACACCAACCCCAACGAGGCGCCGAACCCG
CGCCCCTACGGCGTCTGCACCGTGCTGGTGCCGGCGCTCGGCGCGCGGCT
GACGGTGGACGGCATCCAGGCCAAGGGCCTGCCGTGGAAGCGCGAGCGCG
AGGGACGGCCCTTCAGCACCTGCGCGCTGGCCTTCTCCGAAAGCTGGACG
GAAGCGCGGTAG

Coding sequence (CDS) from alignment at P-wetherbeei_contig20919:885..1196-

>mRNA_P-wetherbeei_contig20919.2.1 ID=mRNA_P-wetherbeei_contig20919.2.1|Name=mRNA_P-wetherbeei_contig20919.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig20919:885..1196- (Phaeothamnion wetherbeei SAG_119_79)
GTGATCGACGCCGAATTCTCGCGTTCGGGCGACCCGCACTATTTCTGGAC
CGAGCACGTCTCGGCGGCCGACTCCGAGGTGGCGCTCACCTGGTACGACG
TCGGCGATCCGCTGCTGATCCACACCAACCCCAACGAGGCGCCGAACCCG
CGCCCCTACGGCGTCTGCACCGTGCTGGTGCCGGCGCTCGGCGCGCGGCT
GACGGTGGACGGCATCCAGGCCAAGGGCCTGCCGTGGAAGCGCGAGCGCG
AGGGACGGCCCTTCAGCACCTGCGCGCTGGCCTTCTCCGAAAGCTGGACG
GAAGCGCGGTAG