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Homology
BLAST of mRNA_P-wetherbeei_contig2091.1.2 vs. uniprot
Match: A0A835Z222_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z222_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 5.650e-13 Identity = 111/364 (30.49%), Postives = 161/364 (44.23%), Query Frame = 1
Query: 82 VTAEAAALRYFLATGGNGEDTVVD--LALFGLRSLLAQHRIEEL--HHTVIHAVTESARKEVIAVLATGCKTNRARDHRRRTAEAWVSTHRGAVGPGARGILSTFSGNRKTRPQSAQVAAPRTGPSAALPGGAATAPAPPPSRSAPVRPRVGASR------PNVLARYPFVDG-GHMGDVMAGAGLSVPLHSLQPRQAARLATRAFADHRSGACGL----PSSGVAAALEDLFFGG---STTRSDDFPS----------------LSLVLSVAGEWLPELLE---------------PDAAERAQGGFDWTLQHPPAGENGRMLRSSPQPGLCLDQNDWIMLVRHVVLRLQGLESGRPEEGAGP 1026
+A+A ALR+ LA + TV++ LA GLR LL HR+++L + + + A TE+AR+EV A+L R+H R P AR +T R+TR SA PR LP +PV+ + SR P+VLA+YPFVDG G++G+++A + P H L R+ RLA AF ++RS A G+ P + LF ST R DF S + L+L++A E LP L+ P A G + ++ P N ++ P+ +DQ++W LV HVV RL +E GR + GP
Sbjct: 5 ASADAFALRHVLAKFPREQKTVIEECLAWHGLRVLLQAHRLDDLLGNASAVLAATEAARREVHAIL---------REHSTRGPR-----------PTARTKAATAVAKRRTR--SASPTTPR------LP-------------RSPVKGTLRGSRQPDIPRPDVLAKYPFVDGQGNVGEILACPPRTTPFHRLAKREIRRLAKAAFMEYRSSAHGIRLHAPPQIAPTGITPLFDARCRTSTPRLRDFKSALSALFGEATYSACGGMHLILALAQEALPHSLQLVLRDTSDLGDVSTAPSVATFGMGLTEDNIEVP---GNTHPVKV-PRNDAAVDQSEWTRLVAHVVRRLWQME-GRGLQLGGP 322
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2596 |
| Hectar predicted targeting category | other localisation |
| Exons | 8 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_002060.1 |
| Cds size | 2385 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186211.7821734-UTR-P-wetherbeei_contig2091:1..25 | 1683186211.7821734-UTR-P-wetherbeei_contig2091:1..25 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig2091 2..25 + |
| 1683186211.866213-UTR-P-wetherbeei_contig2091:3518..3705 | 1683186211.866213-UTR-P-wetherbeei_contig2091:3518..3705 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig2091 3519..3705 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186211.792417-CDS-P-wetherbeei_contig2091:25..297 | 1683186211.792417-CDS-P-wetherbeei_contig2091:25..297 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig2091 26..297 + |
| 1683186211.8031256-CDS-P-wetherbeei_contig2091:421..513 | 1683186211.8031256-CDS-P-wetherbeei_contig2091:421..513 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig2091 422..513 + |
| 1683186211.8117025-CDS-P-wetherbeei_contig2091:647..854 | 1683186211.8117025-CDS-P-wetherbeei_contig2091:647..854 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig2091 648..854 + |
| 1683186211.8201802-CDS-P-wetherbeei_contig2091:998..1142 | 1683186211.8201802-CDS-P-wetherbeei_contig2091:998..1142 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig2091 999..1142 + |
| 1683186211.8290043-CDS-P-wetherbeei_contig2091:1348..1451 | 1683186211.8290043-CDS-P-wetherbeei_contig2091:1348..1451 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig2091 1349..1451 + |
| 1683186211.8381846-CDS-P-wetherbeei_contig2091:1648..1730 | 1683186211.8381846-CDS-P-wetherbeei_contig2091:1648..1730 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig2091 1649..1730 + |
| 1683186211.8473473-CDS-P-wetherbeei_contig2091:1897..2797 | 1683186211.8473473-CDS-P-wetherbeei_contig2091:1897..2797 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig2091 1898..2797 + |
| 1683186211.8564374-CDS-P-wetherbeei_contig2091:2933..3518 | 1683186211.8564374-CDS-P-wetherbeei_contig2091:2933..3518 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig2091 2934..3518 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig2091.1.2 >prot_P-wetherbeei_contig2091.1.2 ID=prot_P-wetherbeei_contig2091.1.2|Name=mRNA_P-wetherbeei_contig2091.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=795bp
MRPLSGGPTAFSQPLGKGGVTAEAAALRYFLATGGNGEDTVVDLALFGLR
SLLAQHRIEELHHTVIHAVTESARKEVIAVLATGCKTNRARDHRRRTAEA
WVSTHRGAVGPGARGILSTFSGNRKTRPQSAQVAAPRTGPSAALPGGAAT
APAPPPSRSAPVRPRVGASRPNVLARYPFVDGGHMGDVMAGAGLSVPLHS
LQPRQAARLATRAFADHRSGACGLPSSGVAAALEDLFFGGSTTRSDDFPS
LSLVLSVAGEWLPELLEPDAAERAQGGFDWTLQHPPAGENGRMLRSSPQP
GLCLDQNDWIMLVRHVVLRLQGLESGRPEEGAGPPPRGWATAGLHQREPA
SRVTLGRSHGIVGGDGGGGGARADDAHGGGNAAVATRLDDSNAAALVYDR
TSKADISGGEDSEYEEEKNYGAHSGRCLSGAAARSGTTGQGPGPADAGTR
DAAAQRDTRVGEADRGGVGGSGSGGGCGRRAADAGRSASGPALHQVGAPN
RRPPSAASCPPQAASAKSPFFVSRSPPRGHATAAALSVRAAESAAARRAV
RLSLAAAAPLQAVALRRRVENAQSRIALEVRRDRELARRKQRKEDAVIAQ
LIAQHRERTPEECVPQGDHSEGRGSSYGGGSDGGAVQDARWDGPVRVIDS
VGDTGFGSMGSATGEKSTEEMAGGNDDSGGDAGDADGSSGDGSSGSGGGG
AGGDDGDGDDYGGCGNGDEDAGYYGPDETCGHADSSGKAGGSSPGTSTGG
GEDDEGLHEMGGSGGAASSSTEPTAVRRQKSRLLGRRSKTLPPV* back to topmRNA from alignment at P-wetherbeei_contig2091:2..3705+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig2091.1.2 ID=mRNA_P-wetherbeei_contig2091.1.2|Name=mRNA_P-wetherbeei_contig2091.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3704bp|location=Sequence derived from alignment at P-wetherbeei_contig2091:2..3705+ (Phaeothamnion wetherbeei SAG_119_79)
AAACCCTACGAAATAAGGCAACGAATGCGTCCGCTCAGTGGAGGACCAAC
GGCGTTTTCGCAGCCCCTCGGCAAAGGAGGAGTAACGGCCGAAGCAGCCG
CGCTGCGCTACTTCTTGGCAACTGGTGGCAATGGAGAGGACACCGTGGTC
GACTTAGCGCTTTTTGGACTGCGCAGCCTCCTTGCCCAACATCGCATCGA
AGAGCTTCATCACACGGTCATCCATGCCGTCACGGAATCAGCGAGAAAGG
AAGTCATTGCAGTCCTAGCAACCGGGTGCAAGACAAACAGGGCCAGGTGA
GAAATGGGCGGCTGTTTTTTATGTCTGCAACATTTCTGCCGATAGAGTCC
ATCTCCTGGCTAACATGCAACTCGCTTTGCTCCCCCGCCATTCACCTTCT
GCCAACTTCGAAATCTCCAGAGATCATCGAAGACGGACTGCCGAAGCATG
GGTTTCCACTCACCGCGGGGCCGTCGGCCCCGGTGCCAGAGGCATCCTCT
CCACATTTTCAGGTGGCGTTCTTTTTGCCCTCAGACTATATTTATAACTT
CATGCGCTCTTTTCGCCGCGTGAAGGATAACTGCATCAGGAGAAAATCAC
GTCTCTGCTCCCATTTACCCGTGTTCTCACTGCCGCCTCCTTCCAGGAAA
CCGCAAGACGCGACCGCAGTCAGCACAGGTTGCTGCGCCCCGCACCGGGC
CATCGGCTGCTTTGCCAGGAGGCGCAGCGACTGCACCGGCGCCGCCGCCT
TCTCGGTCTGCTCCCGTCCGCCCCCGAGTCGGGGCGTCGCGGCCGAACGT
GCTGGCGCGGTACCCTTTTGTTGACGGCGGGCACATGGGCGACGTGATGG
CCGGTGAGCCGGAAACAAATGTCTCTGTCTTTCGTTTCGGTGTTCTTATG
TTTTTCTCCCGAGCTTTCGAGCTTTCCTTTCGAGCTCTTCAATCATTCAA
CTTCGTTTGTTGCCAATGCCATGCCTGCTGTCGTCGCCGCACTCCAGGAG
CCGGCCTTTCAGTGCCTTTACACAGTCTTCAGCCCCGCCAGGCGGCGCGC
CTGGCCACGCGCGCCTTCGCCGACCACCGCAGCGGCGCCTGCGGACTGCC
CTCGTCCGGTGTGGCCGCGGCGCTTGAGGACCTCTTCTTTGGTACGTTTC
CGGCCGTCGCCGCGTTGAGCTGCGGTTCTTACCTTTCCGCGAAGCTTGAT
TCGCGACGGAGTGCATTTTTGCTGCAGTCCGTCCCTCGTGATTATCTCAG
CCTTCGCTGTAGTCCGTCCCTGGTGCTTCTTTCTGCATGCATGCGATCGC
GGACTGCCTTTTTTTCTCTTCGTACTGGACGTTTTCCATCCGTCCAGGCG
GCTCGACGACGCGCAGCGACGACTTCCCGAGCCTTTCGCTGGTGCTCAGC
GTGGCGGGGGAGTGGCTCCCAGAGCTGCTTGAGCCCGACGCTGCGGAGAG
GTAGGCCGGCAGATTTTAAAAGGGCATTTCACCCGAGCTTTCTGGATGTG
TGATGTGCCAGCTCACCGCTTGCACGAATCAGTTCAACAGCTGTCTATTT
TTTTTGTTATGGAAAGATAGCCATGCGTGCCATTCAGTTCAACCATTACT
GCATTAACGCTGCCATCGCTTCGTGCCGTCGCGATCTACGTACGCAGGGC
GCAAGGTGGCTTCGACTGGACGCTGCAGCACCCTCCGGCAGGCGAAAACG
GGCGAATGCTGCGGTCGTCGCCGCAGCCGGTGTGTGTCTGGCGTCGGTCC
TGTTCCCGTGACTGAGCAACCACCTTTGAAACTCAGGCTTACCTGGCCTC
TTGGTCGCTTCTTTCTTTTATTGTGCCTGTGCGGTAGGTTTTCAATGTTA
TTTCTCTTTTGCTTTCCAACAATGCTCTTCGTTTGCTCTCCAACAGGGCT
TGTGTTTGGACCAAAACGACTGGATCATGCTGGTACGGCATGTCGTCCTG
CGCCTGCAAGGGCTCGAAAGCGGGCGGCCCGAGGAGGGCGCCGGGCCGCC
GCCGCGTGGGTGGGCTACAGCAGGCCTCCATCAGCGAGAGCCTGCCTCGC
GAGTGACTCTGGGCCGCAGCCACGGCATCGTCGGCGGCGACGGAGGTGGC
GGCGGTGCGAGGGCAGACGACGCGCATGGTGGCGGCAATGCTGCCGTGGC
TACTCGCCTGGACGACAGCAACGCCGCTGCCCTCGTGTACGACCGAACCT
CCAAAGCAGATATCAGCGGCGGCGAAGATTCGGAGTACGAGGAGGAGAAG
AACTACGGAGCGCACAGTGGCAGATGCCTTTCGGGGGCTGCCGCCCGCAG
CGGCACCACGGGTCAAGGTCCGGGGCCAGCTGACGCAGGCACGCGCGACG
CTGCCGCACAGCGGGACACGCGGGTTGGCGAGGCGGACCGTGGCGGGGTT
GGCGGCAGCGGCAGCGGCGGCGGCTGCGGCCGCCGAGCCGCGGATGCTGG
CAGAAGCGCGAGCGGCCCGGCGCTACACCAGGTTGGCGCACCCAACCGGC
GGCCGCCTTCCGCCGCCAGTTGCCCGCCGCAGGCGGCGTCGGCGAAGTCG
CCCTTCTTTGTGTCACGGTCGCCACCTCGCGGCCACGCCACGGCGGCGGC
ACTCTCCGTGCGGGCGGCGGAGTCTGCGGCTGCTCGGCGGGCGGTACGGC
TTTCGTTGGCGGCGGCCGCGCCACTGCAGGCCGTTGCGCTGCGGAGGCGG
GTGGAGAATGCGCAGTCACGGATAGCGCTGGAGGTGCGGCGCGACCGTGA
ACTGGCAAGGCGGAAGCAACGCAAAGAAGATGCCGTCATTGCTCAGGTAG
TCTGGCCTTTGCCTTTTCCTAGCCCCGATGACGCCGGTGCGCGTGTTGTC
TGGATGCCACGACTTTCTATAAACTGCTGCGTTAAAATGAAATTGTTTTG
GAACCATTTCCTCTCTCTTTGGCCATTTTTAGCTCATTGCACAACATCGA
GAGCGAACTCCCGAAGAGTGCGTGCCTCAAGGCGACCACAGCGAGGGCCG
CGGCAGCAGCTACGGTGGCGGCAGCGACGGCGGTGCCGTTCAAGATGCGC
GCTGGGATGGCCCCGTCCGGGTCATCGACAGTGTGGGAGACACTGGTTTT
GGAAGCATGGGCAGCGCTACGGGAGAAAAATCTACCGAGGAAATGGCCGG
CGGCAACGATGACAGTGGCGGCGACGCCGGCGACGCGGACGGCAGCAGCG
GCGACGGGAGCAGCGGCAGTGGTGGCGGCGGTGCCGGCGGCGATGACGGC
GATGGCGATGATTATGGCGGTTGCGGCAACGGTGACGAGGACGCCGGATA
CTATGGACCCGACGAGACTTGCGGGCACGCCGATTCGAGCGGCAAGGCAG
GCGGTTCATCGCCTGGCACATCTACCGGCGGTGGTGAAGACGACGAAGGG
CTTCATGAAATGGGTGGGAGCGGTGGCGCAGCAAGCAGCAGCACAGAACC
GACAGCCGTGCGGCGGCAGAAGAGTCGGCTATTGGGACGGCGCTCAAAGA
CGCTGCCGCCTGTATAGATGACATCGGGTTTGACCTGGACAACACGTAGC
CGCAGCCTCACACTCTGTAGCGGCGCTCGATCAGCCGCTCTTTTTGGTGC
GGTGGCGCTATGCGTAAAAGAGTGATGGTGTGAAGGGTGGTTTAAATCAT
TATAATGTTTGAGGAGCGGGTTGGACCTTAAACCGGCGTCGGAGCCTCTA
TTCT back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig2091:2..3705+ >mRNA_P-wetherbeei_contig2091.1.2 ID=mRNA_P-wetherbeei_contig2091.1.2|Name=mRNA_P-wetherbeei_contig2091.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2385bp|location=Sequence derived from alignment at P-wetherbeei_contig2091:2..3705+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCCGCTCAGTGGAGGACCAACGGCGTTTTCGCAGCCCCTCGGCAA
AGGAGGAGTAACGGCCGAAGCAGCCGCGCTGCGCTACTTCTTGGCAACTG
GTGGCAATGGAGAGGACACCGTGGTCGACTTAGCGCTTTTTGGACTGCGC
AGCCTCCTTGCCCAACATCGCATCGAAGAGCTTCATCACACGGTCATCCA
TGCCGTCACGGAATCAGCGAGAAAGGAAGTCATTGCAGTCCTAGCAACCG
GGTGCAAGACAAACAGGGCCAGAGATCATCGAAGACGGACTGCCGAAGCA
TGGGTTTCCACTCACCGCGGGGCCGTCGGCCCCGGTGCCAGAGGCATCCT
CTCCACATTTTCAGGAAACCGCAAGACGCGACCGCAGTCAGCACAGGTTG
CTGCGCCCCGCACCGGGCCATCGGCTGCTTTGCCAGGAGGCGCAGCGACT
GCACCGGCGCCGCCGCCTTCTCGGTCTGCTCCCGTCCGCCCCCGAGTCGG
GGCGTCGCGGCCGAACGTGCTGGCGCGGTACCCTTTTGTTGACGGCGGGC
ACATGGGCGACGTGATGGCCGGAGCCGGCCTTTCAGTGCCTTTACACAGT
CTTCAGCCCCGCCAGGCGGCGCGCCTGGCCACGCGCGCCTTCGCCGACCA
CCGCAGCGGCGCCTGCGGACTGCCCTCGTCCGGTGTGGCCGCGGCGCTTG
AGGACCTCTTCTTTGGCGGCTCGACGACGCGCAGCGACGACTTCCCGAGC
CTTTCGCTGGTGCTCAGCGTGGCGGGGGAGTGGCTCCCAGAGCTGCTTGA
GCCCGACGCTGCGGAGAGGGCGCAAGGTGGCTTCGACTGGACGCTGCAGC
ACCCTCCGGCAGGCGAAAACGGGCGAATGCTGCGGTCGTCGCCGCAGCCG
GGCTTGTGTTTGGACCAAAACGACTGGATCATGCTGGTACGGCATGTCGT
CCTGCGCCTGCAAGGGCTCGAAAGCGGGCGGCCCGAGGAGGGCGCCGGGC
CGCCGCCGCGTGGGTGGGCTACAGCAGGCCTCCATCAGCGAGAGCCTGCC
TCGCGAGTGACTCTGGGCCGCAGCCACGGCATCGTCGGCGGCGACGGAGG
TGGCGGCGGTGCGAGGGCAGACGACGCGCATGGTGGCGGCAATGCTGCCG
TGGCTACTCGCCTGGACGACAGCAACGCCGCTGCCCTCGTGTACGACCGA
ACCTCCAAAGCAGATATCAGCGGCGGCGAAGATTCGGAGTACGAGGAGGA
GAAGAACTACGGAGCGCACAGTGGCAGATGCCTTTCGGGGGCTGCCGCCC
GCAGCGGCACCACGGGTCAAGGTCCGGGGCCAGCTGACGCAGGCACGCGC
GACGCTGCCGCACAGCGGGACACGCGGGTTGGCGAGGCGGACCGTGGCGG
GGTTGGCGGCAGCGGCAGCGGCGGCGGCTGCGGCCGCCGAGCCGCGGATG
CTGGCAGAAGCGCGAGCGGCCCGGCGCTACACCAGGTTGGCGCACCCAAC
CGGCGGCCGCCTTCCGCCGCCAGTTGCCCGCCGCAGGCGGCGTCGGCGAA
GTCGCCCTTCTTTGTGTCACGGTCGCCACCTCGCGGCCACGCCACGGCGG
CGGCACTCTCCGTGCGGGCGGCGGAGTCTGCGGCTGCTCGGCGGGCGGTA
CGGCTTTCGTTGGCGGCGGCCGCGCCACTGCAGGCCGTTGCGCTGCGGAG
GCGGGTGGAGAATGCGCAGTCACGGATAGCGCTGGAGGTGCGGCGCGACC
GTGAACTGGCAAGGCGGAAGCAACGCAAAGAAGATGCCGTCATTGCTCAG
CTCATTGCACAACATCGAGAGCGAACTCCCGAAGAGTGCGTGCCTCAAGG
CGACCACAGCGAGGGCCGCGGCAGCAGCTACGGTGGCGGCAGCGACGGCG
GTGCCGTTCAAGATGCGCGCTGGGATGGCCCCGTCCGGGTCATCGACAGT
GTGGGAGACACTGGTTTTGGAAGCATGGGCAGCGCTACGGGAGAAAAATC
TACCGAGGAAATGGCCGGCGGCAACGATGACAGTGGCGGCGACGCCGGCG
ACGCGGACGGCAGCAGCGGCGACGGGAGCAGCGGCAGTGGTGGCGGCGGT
GCCGGCGGCGATGACGGCGATGGCGATGATTATGGCGGTTGCGGCAACGG
TGACGAGGACGCCGGATACTATGGACCCGACGAGACTTGCGGGCACGCCG
ATTCGAGCGGCAAGGCAGGCGGTTCATCGCCTGGCACATCTACCGGCGGT
GGTGAAGACGACGAAGGGCTTCATGAAATGGGTGGGAGCGGTGGCGCAGC
AAGCAGCAGCACAGAACCGACAGCCGTGCGGCGGCAGAAGAGTCGGCTAT
TGGGACGGCGCTCAAAGACGCTGCCGCCTGTATAG back to top
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