mRNA_P-wetherbeei_contig209.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig209.3.1
Unique NamemRNA_P-wetherbeei_contig209.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig209.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig209contigP-wetherbeei_contig209:6551..7731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size507
Hectar predicted targeting categorymitochondrion
Exons2
Cds size486
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186211.4409413-UTR-P-wetherbeei_contig209:6550..65711683186211.4409413-UTR-P-wetherbeei_contig209:6550..6571Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig209 6551..6571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186211.4505732-CDS-P-wetherbeei_contig209:6571..69581683186211.4505732-CDS-P-wetherbeei_contig209:6571..6958Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig209 6572..6958 +
1683186211.4598813-CDS-P-wetherbeei_contig209:7632..77311683186211.4598813-CDS-P-wetherbeei_contig209:7632..7731Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig209 7633..7731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig209.3.1prot_P-wetherbeei_contig209.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig209 6572..7731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig209.3.1

>prot_P-wetherbeei_contig209.3.1 ID=prot_P-wetherbeei_contig209.3.1|Name=mRNA_P-wetherbeei_contig209.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
MPFCDARQGLMASARLRSFQLARYQQLLPPQRSRGLTGAPSAKGKASKAS
FLEGVVVFAVPHADALTIYKIKKSWQLQVTDAGGELLPADQDDAAAVPYI
VVDPDMPPVPLAASLYCWPAMPAAVAAADRRRRCHPRQPRGSGGGNSGHG
GDESLSETGEC*
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mRNA from alignment at P-wetherbeei_contig209:6551..7731+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig209.3.1 ID=mRNA_P-wetherbeei_contig209.3.1|Name=mRNA_P-wetherbeei_contig209.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1181bp|location=Sequence derived from alignment at P-wetherbeei_contig209:6551..7731+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAGAGTGAACGCACGCCTTATGCCATTCTGCGACGCACGGCAGGGTTT
GATGGCATCCGCACGGCTTCGAAGTTTTCAGCTCGCTCGCTACCAGCAGC
TGCTTCCGCCGCAACGAAGCAGAGGTCTGACTGGGGCGCCAAGCGCCAAG
GGCAAAGCTTCAAAGGCAAGCTTTCTCGAGGGTGTCGTCGTGTTTGCCGT
CCCCCACGCCGACGCCTTGACAATATACAAGATCAAGAAGTCCTGGCAGC
TGCAGGTGACCGATGCCGGCGGTGAGCTCCTGCCAGCGGACCAGGACGAC
GCCGCCGCCGTCCCCTACATCGTCGTCGACCCCGACATGCCCCCGGTGCC
GCTCGCCGCGAGCCTCTACTGCTGGCCCGCCATGCCCGCCGCCGTCGCCG
CCGCCGACGCCGCCACTGCTGCCACCACCGCCGCCGCTGCCACCACCGCC
GCCGCTGCCACCACCGCCGCCACCGCGGTGCCACGGCTGGCGCGACCGCC
TCGGGGTTTGCGGTGCCGCCGGGGAAGCCCATGCTGAGCTACTGATGGCT
CGTCGACTACTATTAGCAGCGCTGCCGCGTCGACGAAGAACTGTACGACT
TGATTTCAGAAGGCAGAGCGGCCGTGCTGGCGGCGGTAGCGGTTGCACGG
GCGGCTGCGGCTGCGGCAGCGACGGCGGCACCGGCGGCGGATTCGAATGG
CGATCGGGAGCTGAGAAAGCGGTAGCGGCCGCCGTCGCCGACGGGGAACG
GTGCGGTGCGACGCCAGCGCCTCAAAGGCGAGGGTGGTCGCGGGGTGAGC
CGTCCAGAGCGAACCATCGCGGCCGCGATCGCCGCCGCCGCCGGTCCGGC
AGGGGCCCGGCAGGCGCTACCTTTGAGTGCTCTGGGGCGTCATCCGCTGC
CGCAATCGCGCTGCTGTGGAGCCAGGGAGATGGCGGCAGCAGCAGTGGCA
GCGGCGGCAGCGGTGGGGAGCCCGACGCTGCCGACGCATGGCCACGAGGG
TTCAACCTCTGTGGAGGGATGCCAAAGCTCGGAGCGGCAGCGGCGGCAGT
GGGAGGGGCGGCGGCCGTGGCGGCCGTGACAGCGGCGGCGGCGATGCCAC
CCGCGGCAGCCACGCGGTTCCGGTGGCGGCAATTCTGGACACGGCGGTGA
TGAAAGCTTGTCGGAAACCGGTGAGTGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig209:6551..7731+

>mRNA_P-wetherbeei_contig209.3.1 ID=mRNA_P-wetherbeei_contig209.3.1|Name=mRNA_P-wetherbeei_contig209.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig209:6551..7731+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCATTCTGCGACGCACGGCAGGGTTTGATGGCATCCGCACGGCTTCG
AAGTTTTCAGCTCGCTCGCTACCAGCAGCTGCTTCCGCCGCAACGAAGCA
GAGGTCTGACTGGGGCGCCAAGCGCCAAGGGCAAAGCTTCAAAGGCAAGC
TTTCTCGAGGGTGTCGTCGTGTTTGCCGTCCCCCACGCCGACGCCTTGAC
AATATACAAGATCAAGAAGTCCTGGCAGCTGCAGGTGACCGATGCCGGCG
GTGAGCTCCTGCCAGCGGACCAGGACGACGCCGCCGCCGTCCCCTACATC
GTCGTCGACCCCGACATGCCCCCGGTGCCGCTCGCCGCGAGCCTCTACTG
CTGGCCCGCCATGCCCGCCGCCGTCGCCGCCGCCGACCGGCGGCGGCGAT
GCCACCCGCGGCAGCCACGCGGTTCCGGTGGCGGCAATTCTGGACACGGC
GGTGATGAAAGCTTGTCGGAAACCGGTGAGTGCTGA
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