mRNA_P-wetherbeei_contig209.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig209.1.1
Unique NamemRNA_P-wetherbeei_contig209.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig209.1.1 vs. uniprot
Match: A0A835YNI4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNI4_9STRA)

HSP 1 Score: 250 bits (638), Expect = 3.720e-69
Identity = 175/485 (36.08%), Postives = 245/485 (50.52%), Query Frame = 3
Query:  249 DPDKRRIVTSRPKE-NPLANAIRNFEGQFEFLSTMHRSSVLLPGDDEPYPTIEHAFQASKTEDPGLRAAVRAARTGIDAKKTTRTAPVTDAWRARSEALMELLVRDKFLRHPKQRDRLIATGDRPIVFENTHDDRIWGVCRGAGENKLGKLLEQVRADVARGGGEDALAWCRARFALPRPEDAALGLVALKRGAPVEALDFTAKPIIRVGKHPDNDVVLEHPTASRWHALIVLDLSGSNGGDGCIXXXXXXXXXXGGGSRTGTPYVVCLGAANGTFVGGKRLEAFAPRALPVAPXXXXXXXXXXXXXXXXXGRTGCGADVSAAVAXXXXXXXXXXXAGVAFGVSARRWVVMAAETTRRDAQRAALLREMAGGITAEGGVVTDAAGGGTPPEDATVYVSGLAKEADEVAVAEIFEDCGEIHSVRVLKEAGGGLS----------RGIAFVSFRRPAGAVKALMMD-GEIVGDGANPIKVRRSKAKP 1667
            +P +   + S+PK  +PL  AI   + ++E+LS +HR+ V LPGD+EPYPT+EHAFQASKTED  LRA +RAA T I+AKK  R   V+DAWR+RSEA+ME LVRDKF RH K R++L+ TG + + + N H+D++WGVC G GENKLG+                        FAL  P+ +A  +   K GA ++        ++++GK   NDV++EHP+ SR HAL+++  +G  G  GC+                    +V LGA NGTFVGG+RL  F PR +                         CGA   AA             A + FG+S R + V +     R+ Q+AAL   +A    A G       GG       TVYV  L+ +  E  +   F  CGEI ++ + +   G             RG AF++F    G  +AL MD  E+ G     +KV+R++A P
Sbjct:    3 EPGRYYYMPSKPKAVDPLKTAIHIGKEEYEYLSNLHRAKVYLPGDEEPYPTVEHAFQASKTEDMQLRAEIRAAPTAIEAKKAARKIAVSDAWRSRSEAIMEALVRDKFRRHDKYREQLLGTGAQLLAYVNEHNDKLWGVCDGKGENKLGE------------------------FALV-PQCSAAPMNISKGGAVLDTPVIEGTALVQLGKVEGNDVLMEHPSTSRRHALLLVPRAGRGGQGGCL--------------------LVDLGAPNGTFVGGERLAPFVPRRV-------------------------CGALGEAA-------------ATMTFGLSRREYRVASLRRDLREMQKAALYATVAAPAAAPGTAAAATTGGPN-----TVYVGNLSYDVTEAQLRAAFAPCGEIAALSLPRARDGDAGXXXXXXXXXHRGFAFITFATLTGGARALAMDRDELAG---REMKVKRAEAPP 396          
BLAST of mRNA_P-wetherbeei_contig209.1.1 vs. uniprot
Match: D8LBP7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBP7_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 2.080e-67
Identity = 138/292 (47.26%), Postives = 175/292 (59.93%), Query Frame = 3
Query:  240 MTMDPDKRRIVTSRPKENPLANAIRNFEGQFEFLSTMHRSSVLLPGDDEPYPTIEHAFQASKTEDPGLRAAVRAARTGIDAKKTTRTAPVTDAWRARSEALMELLVRDKFLRHPKQRDRLIATGDRPIVFENTHDDRIWGVCRGAGENKLGKLLEQVRADVARGGGEDALAWCRARFALPRPEDAALGLVALKRGAPVEALDFTAKPIIRVGKHPDNDVVLEHPTASRWHALIVLDLSGSNGGDGCIXXXXXXXXXXGGGSRTGTPYVVCLGAANGTFVGGKRLEAFAPRAL 1115
            M++DPD   IV S+PK +  A+AIR FEG FE LS  ++  V L GD EPYP++EHA QASKT+D  L+AA+R A+  I+AKK  R A     WR  SE + E LVRDKF R+ K R+ L+ TG   +V+ NTHDDR WGVC G GENKLGKLLE+VRAD     G+D  AWC  RF L  P D  +G    K G  V    F  KP+IR+GK  DN+VV+ HP+ SR HAL+V+D                         R    ++V LGA+NG+FV G+RL  + P  +
Sbjct:    1 MSVDPDTVYIVHSKPKHDSHADAIRQFEGDFECLSNTYKCPVSLRGDPEPYPSVEHALQASKTDDFELKAAIRQAKNAIEAKKIARVAKPKPDWRGSSEKIAEALVRDKFRRNAKAREVLVGTGRVKLVYTNTHDDRFWGVCTGKGENKLGKLLERVRADAL--AGKDTEAWCATRFQLALPLDVMVGFAVSKAGKIVADPSFEGKPVIRMGKLADNEVVMAHPSVSRSHALLVVD-------------------------RCFGAFLVDLGASNGSFVDGRRLSPYVPEPI 265          
BLAST of mRNA_P-wetherbeei_contig209.1.1 vs. uniprot
Match: W7TWY4_9STRA (Rna recognition motif-containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWY4_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.620e-42
Identity = 111/314 (35.35%), Postives = 165/314 (52.55%), Query Frame = 3
Query:  222 AIMVKSMTMDPDKRRIV-----TSRPKENPLANAIRNFEGQFEFLSTMHRSSVLLPGDD-------EPYPTIEHAFQASKTEDPGLRAAVRAARTGIDAKKTTRTAPVTD--AWRARSEALMELLVRDKFLRHPKQRDRLIATGDRPIVFENTHDDRIWGVCRGAGENKLGKLLEQVRADVARGGGEDALAWCRARFALPRPEDAALGLVALKRGAPVEALDFTA--KPIIRVGKHPDNDVVLEHPTASRWHALIVLDLSGSNGGDGCIXXXXXXXXXXGGGSRTGTPYVVCLGAANGTFVGGKRLEAFAPRAL 1115
            A  V     DPDK+  V     ++      + + I  F G+++FLST+ +S V+LPG+        + YPT+EHA QASK+ DP  R ++ +++  ++AK+    AP  D  AW+ +S  +ME L+RDKF RH   R +L+ TG + +V+EN H+D+ WG C+G G N LG+LLE+VRAD   G     L W +  F         L +   + G P+   D T   K I+  GK  +NDV + HP+ SR+HA++V+                         S+   P +V L AANG+F+  +RLE F   AL
Sbjct:    2 ASAVDRRVFDPDKKASVRVLDDSAATARRLVESRITAFTGEYDFLSTLSKSRVVLPGEGVMEGEGFQAYPTVEHALQASKSSDPTYRQSILSSKDALEAKRRGAKAPNVDKQAWKLKSLVVMEALLRDKFRRHKGLRQQLMNTGTKQLVYENEHNDQFWGTCKGKGHNHLGQLLERVRADEKEGL-LGILLWAKQVFNATSDSKVRLDVSVTREGHPLPEADLTLERKAIVTFGKLAENDVPVAHPSTSRFHAMVVV-------------------------SQPYGPLLVDLEAANGSFLDERRLEPFKGAAL 289          
BLAST of mRNA_P-wetherbeei_contig209.1.1 vs. uniprot
Match: A0A4D9DEI1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEI1_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.160e-41
Identity = 109/314 (34.71%), Postives = 164/314 (52.23%), Query Frame = 3
Query:  222 AIMVKSMTMDPDKRRIV-----TSRPKENPLANAIRNFEGQFEFLSTMHRSSVLLPGDD-------EPYPTIEHAFQASKTEDPGLRAAVRAARTGIDAKKTTRTAPVTD--AWRARSEALMELLVRDKFLRHPKQRDRLIATGDRPIVFENTHDDRIWGVCRGAGENKLGKLLEQVRADVARGGGEDALAWCRARFALPRPEDAALGLVALKRGAPVEALDFTA--KPIIRVGKHPDNDVVLEHPTASRWHALIVLDLSGSNGGDGCIXXXXXXXXXXGGGSRTGTPYVVCLGAANGTFVGGKRLEAFAPRAL 1115
            A  V     DPDK+  V     ++      + + I  F G+++FL T+ +S V++PG+        + YPT+EHA QASK+ DP  R ++ +++  ++AK+    AP  D  AW+ +S  +ME L+RDKF RH   R +L+ TG + +V+EN H+D+ WG C+G G N LG+LLE+VRAD   G     L W +  F         L +   + G P+   D T   K I+  GK  +NDV + HP+ SR+HA++V+                         S+   P +V L AANG+F+  +RLE F   AL
Sbjct:    2 ASAVDRRVFDPDKKASVRVLDDSAATARRLVESRITAFTGEYDFLCTLSKSRVVIPGEGVMEGEGFQAYPTVEHALQASKSSDPTYRQSILSSKDALEAKRRGAKAPNVDKQAWKLKSLVVMEALLRDKFRRHKGLRQQLMNTGTKQLVYENEHNDQFWGTCKGKGHNHLGQLLERVRADEKEGL-LGILLWAKQVFNATSDSKVRLDVSVTREGHPMPEADLTLERKAIVTFGKLAENDVPVAHPSTSRFHAMVVV-------------------------SQPYGPLLVDLEAANGSFLDERRLEPFKGAAL 289          
BLAST of mRNA_P-wetherbeei_contig209.1.1 vs. uniprot
Match: K8YN62_NANGC (Rna recognition motif-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YN62_NANGC)

HSP 1 Score: 139 bits (350), Expect = 1.830e-33
Identity = 81/207 (39.13%), Postives = 119/207 (57.49%), Query Frame = 3
Query:  153 EFFEAARLSSFRALASLRFSSVFAIMVKSMTMDPDKRRIV-----TSRPKENPLANAIRNFEGQFEFLSTMHRSSVLLPGDD-------EPYPTIEHAFQASKTEDPGLRAAVRAARTGIDAKKTTRTAPVTD--AWRARSEALMELLVRDKFLRHPKQRDRLIATGDRPIVFENTHDDRIWGVCRGAGENKLGKLLEQVRADVARG 731
            E+F  A L   R LA        A  V     DPDK+  V     ++      + + I  F G+++FLST+ +S V+LPG+        + YPT+EHA QASK+ DP  R ++ +++  ++AK+    AP  D  AW+ +S  +ME L+RDKF RH   R +L+ TG + +V+EN H+D+ WG C+G G N LG+LLE+VRAD   G
Sbjct:    7 EYFATA-LPDLRRLA-------MASAVDRRVFDPDKKASVRVLDDSAATARRLVESRITAFTGEYDFLSTLSKSRVVLPGEGVMEGEGFQAYPTVEHALQASKSSDPTYRQSILSSKDALEAKRRGAKAPNVDKQAWKLKSLVVMEALLRDKFRRHKGLRQQLMNTGTKQLVYENEHNDQFWGTCKGKGHNHLGQLLERVRADEKEG 205          
BLAST of mRNA_P-wetherbeei_contig209.1.1 vs. uniprot
Match: A0A7S2QMZ6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QMZ6_9DINO)

HSP 1 Score: 112 bits (280), Expect = 1.000e-22
Identity = 130/484 (26.86%), Postives = 195/484 (40.29%), Query Frame = 3
Query:  318 FEGQFEFLSTMHRSSVLLPGDDEPYPTIEHAFQASKTEDPGLRAAVRAARTGIDAKKTTRTAPVTDAWRARSEALMELLVRDKFLRHPKQRDRLIATGDRPIVFENTHDDRIWGVCRGAGENKLGKLLEQVRADVARGGGEDALAWCRARFALPRPEDAALGLVALKRGAPVEALDFTAKPI--------------------------IRVGKHPDNDVVLEHPTASRWHALIVLDLSGSNGGDGCIXXXXXXXXXXGGGSRTGTPYVVCLGAANGTFVGGKRLEAFAPRALPVAPXXXXXXXXXXXXXXXXXGRTGCGADVSAAVAXXXXXXXXXXXAGVAFGVSARRWVV---MAAETTRRDAQRAALLREMAGGITAEGGVVTDAAGGGTPPEDATVYVSGLAKEADEVAVAEIFEDCGEIHSVRVLKEAGGGL--SRGIAFVSFRRPAGAVKALMMDGEIVGDGANPIKVRRSKAKPHDD 1676
            FEG F+FL+  H  +V    D   + ++ HA  A++   P + AA+  A T  +A K        D W  R    ME ++RDKF R    R RL  TGDR +V+EN  DD  WG CRG G+N+LG+LL ++R ++A                    +D  L L  L     +E+ D    PI                           ++GK P N VV  HP+ SR HA+++   S                      SR+G   ++ LG+  G  VGG+++E     +  + P                                            +  G S R + V   ++++  + + Q+  LLRE+   I A+     +AA      E+ATV+V  L  EA++  +  +F+DCG +  VR     GG    +RG  FV F     A +A  ++GE+        K RR K  P  D
Sbjct:    9 FEGPFDFLAPEHPCAV--GWDGRVFKSLRHALLAAQF--PTVAAAIAGAATVSEAAKEAEGEFEADDWDMRRLKAMERILRDKFRRSDDFRKRLKETGDRELVWEND-DDAFWGSCRGKGQNQLGRLLMEIRGNIA--------------------DDTELELYLLLN-CELESDDIKRPPIELHEQKLDANGKVEFSKVHRLQGSGTFKMGKFPSNAVVAAHPSVSREHAILLHTRSRVA-------------------SRSGGVAIMDLGSKAGLAVGGRKVE----HSWVMEPVKSGDE--------------------------------------IRLGTSTRTYTVRVNLSSQIEQLERQQRELLREVEA-IDADAANPVEAAKKAAK-EEATVFVGNLDYEAEKADMLGLFQDCGHVEDVRF---PGGETKATRGFCFVRFDSGMAARRACGLNGEM-------FKERRVKVTPATD 393          
BLAST of mRNA_P-wetherbeei_contig209.1.1 vs. uniprot
Match: A0A7C1JH61_9CHLR (NADAR family protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C1JH61_9CHLR)

HSP 1 Score: 104 bits (259), Expect = 2.460e-22
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  309 IRNFEGQFEFLSTMHRSSVLLPGDDEPYPTIEHAFQASKTEDPGLRAAVRAARTGIDAKKTTRTAPVTDAWRARSEALMELLVRDKFLRHPKQRDRLIATGDRPIVFENTHDDRIWGV------CRGAGENKLGKLLEQVRADVAR 728
            I +FEG++ FLS  + + V+L  D+  YPT+EHAFQA+KT+DP  R AV A++T   AK+  R   +   W     A ME LV+ KF RH   R +L+ATGD  ++  NT +D  WG           G+N LG++L ++R ++ R
Sbjct:    4 ITHFEGEYWFLSNFYPAPVVL--DETEYPTVEHAFQAAKTDDPDERRAVLASKTPALAKRAGRAVTMRPDWNTARFATMESLVQQKFTRHADLRAKLLATGDAELIEGNTWNDTTWGAVWDGDNAAWIGKNYLGQMLMRIRDELRR 147          
BLAST of mRNA_P-wetherbeei_contig209.1.1 vs. uniprot
Match: A0A8I1NH68_9ACTN (NADAR family protein n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A8I1NH68_9ACTN)

HSP 1 Score: 102 bits (255), Expect = 1.220e-21
Identity = 59/142 (41.55%), Postives = 86/142 (60.56%), Query Frame = 3
Query:  300 ANAIRNFEGQFEFLSTMHRSSVLLPGDDEPYPTIEHAFQASKTEDPGLRAAVRAARTGIDAKKT-TRTAPVTDAWRARSEALMELLVRDKFLRHPKQRDRLIATGDRPIVFENTHDDRIWGVCRGAGENKLGKLLEQVRADV 722
            A AI  F G++ FLS    ++V   G  + YPT+EHA+Q +K  DP +R  +R A+    AKK  ++  P  D    R+E +M  LV  KF RH +  D+L+ATG+  +V EN+  D  WGVC G GEN+LG++L +VR ++
Sbjct:   19 APAISGFFGEYRFLSNFWPATVRFEG--QVYPTVEHAYQGAKCVDPTMREQIRLAKRPGKAKKLGSKVKPRADWDEVRAE-VMRHLVSQKFQRHSELGDQLLATGNAELVEENSWGDTFWGVCEGEGENRLGRILMEVRQEL 157          
BLAST of mRNA_P-wetherbeei_contig209.1.1 vs. uniprot
Match: A0A016QKQ2_9DEIO (NADAR domain-containing protein n=2 Tax=Deinococcus TaxID=1298 RepID=A0A016QKQ2_9DEIO)

HSP 1 Score: 101 bits (252), Expect = 1.920e-21
Identity = 58/138 (42.03%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  309 IRNFEGQFEFLSTMHRSSVLLPGDDEPYPTIEHAFQASKTEDPGLRAAVRAARTGIDAKKTTRTAPVTDAWRARSEALMELLVRDKFLRHPKQRDRLIATGDRPIVFENTHDDRIWGVCRGAGENKLGKLLEQVRADV 722
            IR F GQ+ FLS    + + + G    YPT+EHAFQA KTE+   RA +    T  +A++  +   +   W    E +M  ++R KF R P  R+RL+ATGD  +V +N   DR WGV RG G N+LG LL QVR ++
Sbjct:    4 IRGFRGQYAFLSNFEPAVIRVRG--VRYPTVEHAFQACKTENLAERAVIAGLPTPAEARQAGQQVTLRPGWDDMKEEVMLAMLRVKF-RQPDLRERLLATGDAALVEDNAWRDRYWGVYRGQGLNRLGVLLMQVREEI 138          
BLAST of mRNA_P-wetherbeei_contig209.1.1 vs. uniprot
Match: UPI0019B1FDD9 (NADAR family protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019B1FDD9)

HSP 1 Score: 98.6 bits (244), Expect = 2.490e-20
Identity = 58/147 (39.46%), Postives = 85/147 (57.82%), Query Frame = 3
Query:  297 LANAIRNFEGQFEFLSTMHRSSVLLPGDDEPYPTIEHAFQASKTEDPGLRAAVRAARTGIDAKKTTRTAPVTDAWRARSEALMELLVRDKFLRHPKQRDRLIATGDRPIVFENTHDDRIWGVC----RGAGENKLGKLLEQVRADVA 725
            + + I NF  +++FLS  +   V L  DD  YP+IEHAFQA+KT++P  R  ++ A +   AK+  R   + D W      +M  L+R KF RH +    L+ATGD  ++  NT +DR WG      R  G+N LG+LL QVRA+++
Sbjct:    1 MPDIITNFHSEYDFLSNFYLCPVAL--DDIDYPSIEHAFQAAKTDNPDERYKLQIASSPGAAKRLGRRVNLRDDWETVKLNIMLDLLRQKFTRHAEIGQLLLATGDAELIEGNTWNDRFWGAVLKDERWIGQNHLGRLLMQVRAELS 145          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig209.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNI4_9STRA3.720e-6936.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LBP7_ECTSI2.080e-6747.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TWY4_9STRA1.620e-4235.35Rna recognition motif-containing protein n=2 Tax=N... [more]
A0A4D9DEI1_9STRA1.160e-4134.71Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8YN62_NANGC1.830e-3339.13Rna recognition motif-containing protein (Fragment... [more]
A0A7S2QMZ6_9DINO1.000e-2226.86Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7C1JH61_9CHLR2.460e-2240.41NADAR family protein n=1 Tax=Chloroflexi bacterium... [more]
A0A8I1NH68_9ACTN1.220e-2141.55NADAR family protein n=1 Tax=Solirubrobacterales b... [more]
A0A016QKQ2_9DEIO1.920e-2142.03NADAR domain-containing protein n=2 Tax=Deinococcu... [more]
UPI0019B1FDD92.490e-2039.46NADAR family protein n=1 Tax=Burkholderiales bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig209contigP-wetherbeei_contig209:2222..6521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBP7
Preferred nameCIRBP
PFAMsRRM_1
Model size2659
Max annot lvl2759|Eukaryota
KEGG koko:K05658,ko:K12885,ko:K13098,ko:K13195,ko:K14398
KEGG TC3.A.1.201
KEGG Pathwayko02010,ko03015,ko03040,ko04976,ko05202,ko05206,ko05226,map02010,map03015,map03040,map04976,map05202,map05206,map05226
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006417,GO:0006950,GO:0006996,GO:0008150,GO:0009266,GO:0009314,GO:0009409,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016043,GO:0017148,GO:0019219,GO:0019222,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030371,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0034063,GO:0034248,GO:0034249,GO:0034250,GO:0034622,GO:0035770,GO:0036464,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043489,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045182,GO:0045727,GO:0045934,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070181,GO:0070925,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:1990904,GO:2000112,GO:2000113
Exons6
Evalue2.37e-83
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota
EC3.6.3.44
DescriptionRNA binding
Cds size2418
COG categoryH
BRITEko00000,ko00001,ko01000,ko02000,ko03019,ko03041,ko04090,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig209.1.1prot_P-wetherbeei_contig209.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig209 2236..6294 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186211.4880142-UTR-P-wetherbeei_contig209:2221..22351683186211.4880142-UTR-P-wetherbeei_contig209:2221..2235Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig209 2222..2235 -
1683186211.5652995-UTR-P-wetherbeei_contig209:6294..65211683186211.5652995-UTR-P-wetherbeei_contig209:6294..6521Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig209 6295..6521 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186211.5088413-CDS-P-wetherbeei_contig209:2235..32881683186211.5088413-CDS-P-wetherbeei_contig209:2235..3288Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig209 2236..3288 -
1683186211.5204546-CDS-P-wetherbeei_contig209:3595..36801683186211.5204546-CDS-P-wetherbeei_contig209:3595..3680Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig209 3596..3680 -
1683186211.5300288-CDS-P-wetherbeei_contig209:4029..47001683186211.5300288-CDS-P-wetherbeei_contig209:4029..4700Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig209 4030..4700 -
1683186211.5388393-CDS-P-wetherbeei_contig209:4991..52731683186211.5388393-CDS-P-wetherbeei_contig209:4991..5273Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig209 4992..5273 -
1683186211.547598-CDS-P-wetherbeei_contig209:5631..57811683186211.547598-CDS-P-wetherbeei_contig209:5631..5781Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig209 5632..5781 -
1683186211.5563548-CDS-P-wetherbeei_contig209:6117..62941683186211.5563548-CDS-P-wetherbeei_contig209:6117..6294Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig209 6118..6294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig209.1.1

>prot_P-wetherbeei_contig209.1.1 ID=prot_P-wetherbeei_contig209.1.1|Name=mRNA_P-wetherbeei_contig209.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=806bp
MVKSMTMDPDKRRIVTSRPKENPLANAIRNFEGQFEFLSTMHRSSVLLPG
DDEPYPTIEHAFQASKTEDPGLRAAVRAARTGIDAKKTTRTAPVTDAWRA
RSEALMELLVRDKFLRHPKQRDRLIATGDRPIVFENTHDDRIWGVCRGAG
ENKLGKLLEQVRADVARGGGEDALAWCRARFALPRPEDAALGLVALKRGA
PVEALDFTAKPIIRVGKHPDNDVVLEHPTASRWHALIVLDLSGSNGGDGC
IGRGGRGDRGNGGGSRTGTPYVVCLGAANGTFVGGKRLEAFAPRALPVAP
PAITAAIAAADAAADAGGRTGCGADVSAAVAITAAAAVVAEAAGVAFGVS
ARRWVVMAAETTRRDAQRAALLREMAGGITAEGGVVTDAAGGGTPPEDAT
VYVSGLAKEADEVAVAEIFEDCGEIHSVRVLKEAGGGLSRGIAFVSFRRP
AGAVKALMMDGEIVGDGANPIKVRRSKAKPHDDGGRSSGGGGRGSGGGRG
RGDASGGGGGCSGIGGGRGGGAGAKVAGAACGPVAWEPSVPWGATTAGAT
ATAGSGSGRAARFGGIGAAGPASLSRRDGAGGDWANNGAAWKATLAAAAQ
RAAAAKAAAAAAAGAVPAVVVPAQPPVMAPQGASAASGAGEQKKRSHDAF
PKPNKDDGNGRRGGSDDGDDGERGLHRRQRDDDEEDSHGRHPRREFSDGG
GDESDGGRRRSLQRGRRRDDSRDGEEGRRRPRRGSAERRGGSGAERRGGS
GAKRRRRSRSSGSGGGEGSGDERGRREGRHEQRHHPPGPVAVAPMKIAAE
KHKCI*
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mRNA from alignment at P-wetherbeei_contig209:2222..6521-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig209.1.1 ID=mRNA_P-wetherbeei_contig209.1.1|Name=mRNA_P-wetherbeei_contig209.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4300bp|location=Sequence derived from alignment at P-wetherbeei_contig209:2222..6521- (Phaeothamnion wetherbeei SAG_119_79)
ATTCAAAAAGGCAAGGGGCAAGGGGCGACAGGCGAGAAGACTGTGCTTGC CCTACCCCGCTCGCGCACTCAGGGACCGTCCATAGAAAGGAAAAGATACG CTTTGGCAACCGGCATAAAGTACACTGAATAGAGAGAGGAGGCTGCACGG CTGAGTTCTTTGAGGCTGCACGGCTGAGTTCTTTTCGCGCTTTGGCCTCG CTTCGCTTTTCGAGCGTCTTTGCAATCATGGTGAAAAGCATGACAATGGA TCCCGACAAGAGGCGGATCGTCACGTCCCGGCCCAAGGAGAACCCGCTGG CAAATGCCATCCGCAATTTCGAGGGCCAATTCGAGTTTCTTTCAACAATG CACCGTTCCTCGGTGCTGCTGCCGGGAGACGACGAACCTTACCCTACCAT CGAGGTGAGCGGTCGCGAGAAGCGATGCCGCCGGTCTAAACAAACCTGCT GTGTTTTTTTGCACCAGCATTCACTTACAAGCCTTTGCTTTCTGTCCCAG TCACGTCATTCCCTCATACAAGCTCTTTTGTCTAGTCTGTTCTACCCTCC TTTTGCCAAGCATTGTCATGTGCGTGAATCCTCTCTTACGATGCCCGTTT CCCTACCCCGCCGGGTCGTTGCTGCCCTTCCCGGTCACCGACAAACCGCA AATCGCGATCGTCGCCGGAACCATCTGGCAACTCCTGTGGTAACTGGTCG TGGTTGCGGCGGCCCCTGACCGCCTCGCAATCCCTTGCAGCACGCCTTTC AGGCCTCGAAGACAGAGGACCCAGGGCTGCGTGCGGCGGTCCGCGCAGCG CGCACCGGCATCGACGCCAAAAAGACCACCCGTACCGCCCCCGTCACGGA TGCCTGGCGGGCCCGAAGCGAGGCCCTCATGGAGCTCCTGGTGTGTTTCC CTTCTTTTTCCTCCTCTGTCTCGCGGCGGAAAGAGTTTGGGGGTCTTGCA TGGATTCCGTGGCCGTTCTGGTATTTTTTCCTCAGAAGTTTGGGGACTGA AGCTGTAGACAGCGGTTCATTTCAATTTTGGCTCATGTTTTGCTCGTTTC CAAATATCCTGAGCTTTGTTTGCCGTTGCGTTTTTGAGCGCAGAGGCAGG CGGCCCGCCGGGCGTGCGCATCCCTCTCGTCTGGCTTGTAGTGACCAACA AGGCAGTCACAGTGACGCGTGCTGTCATGGATCGATTAACCAACCGGCCT TTTTCCGTCGCTGGGGCAACATGCACGAAGTCGCAACGCACCAAACAGGT GCGCGACAAGTTCTTACGGCACCCGAAGCAGCGCGACCGCCTCATCGCGA CGGGCGATCGCCCCATCGTGTTCGAGAACACCCATGACGACCGTATCTGG GGCGTCTGCCGGGGAGCTGGCGAGAACAAGCTCGGAAAGTTGCTGGAACA GGTTCGGGCGGATGTTGCGCGGGGCGGCGGCGAGGACGCGCTGGCGTGGT GCCGGGCGCGATTCGCGCTCCCGCGGCCGGAGGATGCCGCGCTGGGGCTG GTGGCGCTGAAGCGCGGCGCACCTGTGGAGGTGAGGAAAACCAAAACTTC CTGGTTAAGATTTTCTTTCTTTCTCATGCAGTTTGAAGGAGATGCTCTTT GCTTTCTTGGTGGGCTTTGTTCCTTTCAATGGGTGAAGGCTTCGGCTCTG TACAATGAAGCAGCCTTTCCAAATAGATGTTGAGGTTTGAAGAAATGGCA GTAGGCGCCATTGACGATCCCCGCCCTTTGCGGCGGCATGCCCTTTGTGT AGCAGGCAAGTGTGAGAGAGCACCACCGGCCTAAGAACTGCATTTTCTCC TCTCACCGACCCTTTTCTCAGGCGCTCGACTTTACGGCTAAACCGATCAT CCGTGTCGGAAAGCACCCCGATAATGACGTCGTCCTCGAACACCCGACTG CCTCTCGCTGGCACGCGCTCATCGTCCTCGATCTCAGCGGTAGCAATGGT GGCGACGGCTGTATCGGCAGGGGCGGCAGGGGCGATCGCGGTAATGGCGG CGGCAGCAGGACCGGCACTCCGTACGTCGTGTGCCTCGGCGCCGCCAATG GGACCTTCGTCGGCGGCAAGCGGCTGGAAGCCTTCGCGCCGCGTGCCCTT CCAGTCGCGCCCCCGGCCATCACCGCCGCCATCGCGGCCGCCGACGCCGC CGCCGATGCCGGCGGCCGGACCGGCTGCGGCGCGGACGTCTCCGCCGCCG TGGCGATCACGGCGGCGGCAGCAGTGGTCGCCGAAGCGGCTGGCGTGGCG TTCGGCGTGTCGGCGCGTCGATGGGTGGTGATGGCGGCGGAGACGACGCG GCGGGACGCGCAGCGGGCGGCACTGCTCCGGGAGATGGCCGGCGGCATAA CGGCGGAAGGCGGCGTCGTAACGGACGCAGCGGGCGGCGGGACGCCACCG GAGGACGCGACGGTGTACGTGTCGGGGCTGGCGAAGGAGGCGGACGAGGT GGCTGTGGCGGAGATCTTCGAGGACTGCGGGGAGATCCACAGGTGCGAGC GGTGGAACTTTGCTGAAAAGTTCCTCGGAAAGGCAGCTTTGGCCGCGTTG ACCTTGACCCTTGCAGAATGAGGATTGAATGTGTACAGAAGGCCAAGTCT TGCAGGGATGAGTCTGGCAAAGGTTAACCTGAGCGAAGTGGACGTGCTGC TGGAAGCTCTTGCCCGCCCAATCTCTTCCCATACCGTTTCAGCACTACTT CATCTCATCTTTTCGGGTGCCTTTACGCTTCTCTTCATCCCGCCCCGTCA TTCTGTCTTATCTTCTTCGTATCCCCTCGCCCTGTATTCCCGTTTCGGTT GGTCTTACTTCCTCCTTCAATCTGGCGACCGTGCACGGCAGCGTTCGTGT TCTGAAGGAAGCCGGAGGAGGCCTCTCGCGTGGCATCGCCTTTGTATCGT TTCGCCGCCCTGCCGGCGCGGTAAAGGTGATTTTTCGATGTTTTGAGCAT TGGCGGCAAGGTGCCTTGCCTTTTTTGCCACTTCTTGTCTGTTTTCTACG CTTTGCATTATTGTCTGCTGTTTGCTTCGCCTCTTTGTTGCTGCGGATTA TCGCAAATAGCGGTGCCTCGGTGTGTACAAAGCCTCGTTTTGGCTGGCCT TCAGTTTCACTTTCGTAGCACACCGCCGCCGATCGAAACGCCCCAAATCT TCAGCTGAGAGTTCCGATGTAACCGATGGATGAATTATTTTGTGGATCGC TCTCTTTCGCCACCACGGACGCCCCCAAAACAGGCGCTGATGATGGACGG CGAGATTGTCGGCGACGGCGCCAACCCCATCAAGGTCCGCCGCAGCAAGG CGAAGCCGCACGACGACGGTGGCCGCAGCAGTGGCGGTGGTGGCAGAGGA AGCGGTGGCGGCCGCGGCCGTGGGGACGCCAGCGGAGGGGGCGGGGGTTG CAGCGGCATTGGCGGCGGCAGAGGCGGCGGCGCTGGCGCCAAGGTTGCTG GAGCGGCATGCGGACCGGTGGCATGGGAGCCATCCGTGCCATGGGGAGCT ACAACAGCCGGCGCTACTGCTACCGCTGGCAGCGGCTCGGGCAGAGCCGC CCGATTCGGCGGTATCGGCGCTGCTGGCCCGGCCTCTTTGTCCAGACGCG ATGGCGCTGGCGGCGATTGGGCAAACAATGGGGCGGCATGGAAAGCTACT TTGGCAGCAGCGGCACAAAGGGCCGCCGCCGCAAAGGCTGCGGCGGCGGC GGCGGCCGGTGCTGTACCGGCGGTGGTAGTGCCGGCCCAACCGCCAGTGA TGGCGCCGCAAGGAGCATCGGCGGCATCAGGTGCCGGCGAACAGAAGAAG CGCTCTCACGATGCTTTTCCAAAGCCGAACAAGGACGACGGTAACGGGAG ACGTGGTGGCAGTGACGACGGTGACGATGGCGAGCGCGGCCTACATCGCC GGCAGCGGGACGACGATGAAGAGGATAGCCATGGACGGCACCCCCGCCGC GAGTTCAGCGACGGCGGCGGCGATGAGAGCGACGGCGGACGGCGGCGGTC ACTGCAGCGGGGCCGTCGCCGCGACGACAGCCGGGATGGAGAGGAGGGGA GGAGGCGGCCACGACGGGGTAGTGCGGAGCGGCGGGGTGGCAGTGGTGCG GAGCGGCGGGGCGGCAGTGGTGCGAAGCGCAGGCGCCGCAGCAGGAGTAG TGGCAGCGGCGGCGGTGAAGGAAGCGGGGACGAGAGGGGGCGCAGGGAAG GGCGGCATGAGCAGCGCCACCACCCGCCGGGACCGGTTGCGGTCGCGCCC ATGAAAATCGCTGCGGAGAAGCATAAATGTATTTAAGCGAGCAGTTCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig209:2222..6521-

>mRNA_P-wetherbeei_contig209.1.1 ID=mRNA_P-wetherbeei_contig209.1.1|Name=mRNA_P-wetherbeei_contig209.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2418bp|location=Sequence derived from alignment at P-wetherbeei_contig209:2222..6521- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGAAAAGCATGACAATGGATCCCGACAAGAGGCGGATCGTCACGTC
CCGGCCCAAGGAGAACCCGCTGGCAAATGCCATCCGCAATTTCGAGGGCC
AATTCGAGTTTCTTTCAACAATGCACCGTTCCTCGGTGCTGCTGCCGGGA
GACGACGAACCTTACCCTACCATCGAGCACGCCTTTCAGGCCTCGAAGAC
AGAGGACCCAGGGCTGCGTGCGGCGGTCCGCGCAGCGCGCACCGGCATCG
ACGCCAAAAAGACCACCCGTACCGCCCCCGTCACGGATGCCTGGCGGGCC
CGAAGCGAGGCCCTCATGGAGCTCCTGGTGCGCGACAAGTTCTTACGGCA
CCCGAAGCAGCGCGACCGCCTCATCGCGACGGGCGATCGCCCCATCGTGT
TCGAGAACACCCATGACGACCGTATCTGGGGCGTCTGCCGGGGAGCTGGC
GAGAACAAGCTCGGAAAGTTGCTGGAACAGGTTCGGGCGGATGTTGCGCG
GGGCGGCGGCGAGGACGCGCTGGCGTGGTGCCGGGCGCGATTCGCGCTCC
CGCGGCCGGAGGATGCCGCGCTGGGGCTGGTGGCGCTGAAGCGCGGCGCA
CCTGTGGAGGCGCTCGACTTTACGGCTAAACCGATCATCCGTGTCGGAAA
GCACCCCGATAATGACGTCGTCCTCGAACACCCGACTGCCTCTCGCTGGC
ACGCGCTCATCGTCCTCGATCTCAGCGGTAGCAATGGTGGCGACGGCTGT
ATCGGCAGGGGCGGCAGGGGCGATCGCGGTAATGGCGGCGGCAGCAGGAC
CGGCACTCCGTACGTCGTGTGCCTCGGCGCCGCCAATGGGACCTTCGTCG
GCGGCAAGCGGCTGGAAGCCTTCGCGCCGCGTGCCCTTCCAGTCGCGCCC
CCGGCCATCACCGCCGCCATCGCGGCCGCCGACGCCGCCGCCGATGCCGG
CGGCCGGACCGGCTGCGGCGCGGACGTCTCCGCCGCCGTGGCGATCACGG
CGGCGGCAGCAGTGGTCGCCGAAGCGGCTGGCGTGGCGTTCGGCGTGTCG
GCGCGTCGATGGGTGGTGATGGCGGCGGAGACGACGCGGCGGGACGCGCA
GCGGGCGGCACTGCTCCGGGAGATGGCCGGCGGCATAACGGCGGAAGGCG
GCGTCGTAACGGACGCAGCGGGCGGCGGGACGCCACCGGAGGACGCGACG
GTGTACGTGTCGGGGCTGGCGAAGGAGGCGGACGAGGTGGCTGTGGCGGA
GATCTTCGAGGACTGCGGGGAGATCCACAGCGTTCGTGTTCTGAAGGAAG
CCGGAGGAGGCCTCTCGCGTGGCATCGCCTTTGTATCGTTTCGCCGCCCT
GCCGGCGCGGTAAAGGCGCTGATGATGGACGGCGAGATTGTCGGCGACGG
CGCCAACCCCATCAAGGTCCGCCGCAGCAAGGCGAAGCCGCACGACGACG
GTGGCCGCAGCAGTGGCGGTGGTGGCAGAGGAAGCGGTGGCGGCCGCGGC
CGTGGGGACGCCAGCGGAGGGGGCGGGGGTTGCAGCGGCATTGGCGGCGG
CAGAGGCGGCGGCGCTGGCGCCAAGGTTGCTGGAGCGGCATGCGGACCGG
TGGCATGGGAGCCATCCGTGCCATGGGGAGCTACAACAGCCGGCGCTACT
GCTACCGCTGGCAGCGGCTCGGGCAGAGCCGCCCGATTCGGCGGTATCGG
CGCTGCTGGCCCGGCCTCTTTGTCCAGACGCGATGGCGCTGGCGGCGATT
GGGCAAACAATGGGGCGGCATGGAAAGCTACTTTGGCAGCAGCGGCACAA
AGGGCCGCCGCCGCAAAGGCTGCGGCGGCGGCGGCGGCCGGTGCTGTACC
GGCGGTGGTAGTGCCGGCCCAACCGCCAGTGATGGCGCCGCAAGGAGCAT
CGGCGGCATCAGGTGCCGGCGAACAGAAGAAGCGCTCTCACGATGCTTTT
CCAAAGCCGAACAAGGACGACGGTAACGGGAGACGTGGTGGCAGTGACGA
CGGTGACGATGGCGAGCGCGGCCTACATCGCCGGCAGCGGGACGACGATG
AAGAGGATAGCCATGGACGGCACCCCCGCCGCGAGTTCAGCGACGGCGGC
GGCGATGAGAGCGACGGCGGACGGCGGCGGTCACTGCAGCGGGGCCGTCG
CCGCGACGACAGCCGGGATGGAGAGGAGGGGAGGAGGCGGCCACGACGGG
GTAGTGCGGAGCGGCGGGGTGGCAGTGGTGCGGAGCGGCGGGGCGGCAGT
GGTGCGAAGCGCAGGCGCCGCAGCAGGAGTAGTGGCAGCGGCGGCGGTGA
AGGAAGCGGGGACGAGAGGGGGCGCAGGGAAGGGCGGCATGAGCAGCGCC
ACCACCCGCCGGGACCGGTTGCGGTCGCGCCCATGAAAATCGCTGCGGAG
AAGCATAAATGTATTTAA
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