mRNA_P-wetherbeei_contig2089.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2089.2.1
Unique NamemRNA_P-wetherbeei_contig2089.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2089.2.1 vs. uniprot
Match: A0A481Z3L5_9VIRU (F-box domain and ankyrin repeat protein n=1 Tax=Pithovirus LCPAC103 TaxID=2506588 RepID=A0A481Z3L5_9VIRU)

HSP 1 Score: 56.6 bits (135), Expect = 1.420e-6
Identity = 37/109 (33.94%), Postives = 50/109 (45.87%), Query Frame = 1 
Query:    1 AASFGHRELLSWLRANNA-------EWIWPKDLCSAAARGRRLETLQWVQPDGAIRPHPMCENGCRWDKLSFTGATSIGDFTMLQWLRAEGCPWNLRGVWSSADVQRGR 306
            AA  GH  ++ WL + +        E     ++C  AA G   E L+W+   G    +P+ E  C       T A + G+  MLQWLRA GC WNL      A  +RGR
Sbjct:  288 AALHGHLVIVKWLHSEDRIFKIHSDEIPLESNICRIAAEGDHFEVLKWLHQWG----YPLTEACC-------TNAAAHGNLDMLQWLRANGCDWNLTRCIIVA-AERGR 384
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BLAST of mRNA_P-wetherbeei_contig2089.2.1 vs. uniprot
Match: A0A1M7XUP2_9VIRU (Ankyrin repeat-containing domain n=1 Tax=Cedratvirus A11 TaxID=1903266 RepID=A0A1M7XUP2_9VIRU)

HSP 1 Score: 55.5 bits (132), Expect = 3.530e-6
Identity = 29/91 (31.87%), Postives = 45/91 (49.45%), Query Frame = 1 
Query:   28 LSWLRANNAEWIWPKDLCSAAARGRRLETLQWVQPDGAIRPHPMCENGCRWDKLSFTGATSIGDFTMLQWLRAEGCPWNLRGVWSSADVQR 300
            ++ LR    EW   + +CS       LE L+W +  G       C++    DK +F  A   G+  M+QWLR+EGCPW++   + +A   R
Sbjct:  344 INTLREQGQEWN--EKICSTLVSHDHLEILKWAKATG------WCKSISN-DKRTFALAAGRGNLEMMQWLRSEGCPWDITAFYEAARADR 425
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2089.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A481Z3L5_9VIRU1.420e-633.94F-box domain and ankyrin repeat protein n=1 Tax=Pi... [more]
A0A1M7XUP2_9VIRU3.530e-631.87Ankyrin repeat-containing domain n=1 Tax=Cedratvir... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2089contigP-wetherbeei_contig2089:5284..5886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size432
Hectar predicted targeting categoryother localisation
Exons3
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186211.39357-CDS-P-wetherbeei_contig2089:5283..54271683186211.39357-CDS-P-wetherbeei_contig2089:5283..5427Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2089 5284..5427 -
1683186211.4032388-CDS-P-wetherbeei_contig2089:5584..57151683186211.4032388-CDS-P-wetherbeei_contig2089:5584..5715Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2089 5585..5715 -
1683186211.4129276-CDS-P-wetherbeei_contig2089:5729..58861683186211.4129276-CDS-P-wetherbeei_contig2089:5729..5886Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2089 5730..5886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2089.2.1prot_P-wetherbeei_contig2089.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2089 5284..5886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2089.2.1

>prot_P-wetherbeei_contig2089.2.1 ID=prot_P-wetherbeei_contig2089.2.1|Name=mRNA_P-wetherbeei_contig2089.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
AASFGHRELLSWLRANNAEWIWPKDLCSAAARGRRLETLQWVQPDGAIRP
HPMCENGCRWDKLSFTGATSIGDFTMLQWLRAEGCPWNLRGVWSSADVQR
GRPERETDVPEKGCPWDAESCLEAFFNGDRDFPAWLKAHDCPWN
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mRNA from alignment at P-wetherbeei_contig2089:5284..5886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2089.2.1 ID=mRNA_P-wetherbeei_contig2089.2.1|Name=mRNA_P-wetherbeei_contig2089.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=603bp|location=Sequence derived from alignment at P-wetherbeei_contig2089:5284..5886- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCTTCATTCGGGCACCGAGAACTCCTTTCCTGGCTGCGGGCGAACAA
CGCTGAATGGATCTGGCCGAAAGATTTATGCTCGGCAGCCGCCAGAGGAA
GACGCTTGGAAACTTTGCAGTGGGTGCAGCCCGACGGCGCTATACGGCCA
CATCCGAGTGCTTTTAAAAAGTGTGCGAAAACGGCTGCCGCTGGGACAAG
TTGTCGTTCACTGGCGCCACCTCTATCGGCGATTTCACCATGCTCCAATG
GCTGCGCGCGGAGGGGTGCCCGTGGAATCTCCGCGGCGTGTGGTCCAGTG
CCGTACCATAAGGTGGAGGTCGCATGAAAACACTGCAATGACTGCTCGCA
GAGAAGGTGGACGCATCTTCGACCCCGAAATATGTGCAAGGGCGGCGGAC
TGGATCCGTCTGGACGCCCTAAAGCGGCTGTGGGCCAACGGCTTTTCGTG
GGACGCGAGGACGTGCAGCGCGGCCGTCCGGAACGGGAGACTGATGTACC
TGAAAAAGGGTGCCCTTGGGACGCAGAGAGCTGTTTGGAGGCCTTTTTCA
ACGGCGATCGTGACTTTCCAGCGTGGCTGAAGGCGCACGACTGCCCGTGG
AAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2089:5284..5886-

>mRNA_P-wetherbeei_contig2089.2.1 ID=mRNA_P-wetherbeei_contig2089.2.1|Name=mRNA_P-wetherbeei_contig2089.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig2089:5284..5886- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCTTCATTCGGGCACCGAGAACTCCTTTCCTGGCTGCGGGCGAACAA
CGCTGAATGGATCTGGCCGAAAGATTTATGCTCGGCAGCCGCCAGAGGAA
GACGCTTGGAAACTTTGCAGTGGGTGCAGCCCGACGGCGCTATACGGCCA
CATCCGATGTGCGAAAACGGCTGCCGCTGGGACAAGTTGTCGTTCACTGG
CGCCACCTCTATCGGCGATTTCACCATGCTCCAATGGCTGCGCGCGGAGG
GGTGCCCGTGGAATCTCCGCGGCGTGTGGTCCAGTGCCGACGTGCAGCGC
GGCCGTCCGGAACGGGAGACTGATGTACCTGAAAAAGGGTGCCCTTGGGA
CGCAGAGAGCTGTTTGGAGGCCTTTTTCAACGGCGATCGTGACTTTCCAG
CGTGGCTGAAGGCGCACGACTGCCCGTGGAAC
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