mRNA_P-wetherbeei_contig20884.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20884.1.1
Unique NamemRNA_P-wetherbeei_contig20884.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20884.1.1 vs. uniprot
Match: A0A835Z0S0_9STRA (TMEM164 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0S0_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.190e-41
Identity = 68/151 (45.03%), Postives = 98/151 (64.90%), Query Frame = 1 
Query:    1 YRSKWFLTPRQHVVEALGSVILLLPALVAGVAACQRELARRPSKADPTFRRVGPV-HKVWAYSLLVSVLVGAWMKLQSDHIGSHPMFLWQPCHTHSVVLAATSLVDAQWARAVFHVAVTLWWGPFLALVAPDLPSEPIHIALFYIQHVLMM 450
            Y S W++TP+QH++E + S+++L P +      C   L R  +  D T ++  PV  KVW   LL+SV++  W K   +H+ SHP +L QPCH HSV +A T+  DA W+R + HV+ TLWWGPFLA VAPDLP+  + + +F+IQH LM+
Sbjct:   55 YLSAWYITPQQHIIETIVSLVVLAPLVGFYYRKCSEGL-RAHAVQDRTEKKRFPVLQKVWGGLLLLSVVLQVWFKWNYNHVSSHPAYLAQPCHVHSVAMALTAFSDASWSRGLLHVSATLWWGPFLAFVAPDLPASALEVVVFWIQHTLML 204
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BLAST of mRNA_P-wetherbeei_contig20884.1.1 vs. uniprot
Match: D8LQ85_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ85_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.230e-36
Identity = 64/150 (42.67%), Postives = 94/150 (62.67%), Query Frame = 1 
Query:    7 SKWFLTPRQHVVEALGSVILLLPALVAGVAACQRELARRPSKADPTFRRVGPVHKVWAYSLLVSVLVGAWMKLQSDHIGSHPMFLWQPCHTHSVVLAATSLVDAQWARAVFHVAVTLWWGPFLALVAPDLPSEPIHIALFYIQHVLMMAA 456
            S+W+L+PRQHVVE   S+++L P +      C+  L  + +      +R   + K+W  +LL  V  GA++K     + SHP +LWQPCH HS+V+   + V+ + +  V HVA TLWWGPFLA VAP LP++P+ IA+F+ QH LM+ A
Sbjct:  121 SQWYLSPRQHVVEMALSILVLSPLVYLYFKLCRARLRLKRAAGAFDAKRPSLLMKLWGAALLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLA 270
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BLAST of mRNA_P-wetherbeei_contig20884.1.1 vs. uniprot
Match: A0A7S2V140_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V140_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.810e-26
Identity = 59/154 (38.31%), Postives = 82/154 (53.25%), Query Frame = 1 
Query:    1 YRSKWFLTPRQHVVEALGSVILLLPALVAGVAACQRELARRPSKADP---TFRRVGPVHKVWAYSLLVSVLVGAWMKLQSDHIGSHPMFLWQPCHTHSVVLAATSLV-DAQWARAVFHVAVTLWWGPFLALVAPDLPSEPIHIALFYIQHVLMM 450
            Y   WFL+P  HV+E L S+I+  P L+  +  C + L  + +       T  +   + KVWA  LLV   +   +K  S +  SHP +L QPCH  + ++   +         A+FHV  T WWGP LALVAPDLP+    + LFY+QH LMM
Sbjct:   77 YHGWWFLSPEHHVLEFLASLIVYTPILLFCLKQCAKSLRYQTALQQMEGITIPQPDLLQKVWAVVLLVIATLQIRLKYISLNPASHPAYLLQPCHITTFMMGLITFARPTMLTEALFHVVATTWWGPLLALVAPDLPASSFEVFLFYLQHYLMM 230
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20884.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z0S0_9STRA4.190e-4145.03TMEM164 family-domain-containing protein n=1 Tax=T... [more]
D8LQ85_ECTSI1.230e-3642.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V140_9STRA1.810e-2638.31Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20884contigP-wetherbeei_contig20884:731..1186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28583.AMAG_05674T0
Preferred nameTMEM164
PFAMsTMEM164
Model size456
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.73e-06
EggNOG OGs28PNH@1|root,2QWAJ@2759|Eukaryota,396Y4@33154|Opisthokonta,3P41T@4751|Fungi
Ec32 ortholog descriptionTransmembrane protein 164
Ec32 orthologEc-26_005770.1
DescriptionAllomyces macrogynus ATCC 38327
Cds size456
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186211.2710507-CDS-P-wetherbeei_contig20884:730..11861683186211.2710507-CDS-P-wetherbeei_contig20884:730..1186Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20884 731..1186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20884.1.1prot_P-wetherbeei_contig20884.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20884 731..1186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20884.1.1

>prot_P-wetherbeei_contig20884.1.1 ID=prot_P-wetherbeei_contig20884.1.1|Name=mRNA_P-wetherbeei_contig20884.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
YRSKWFLTPRQHVVEALGSVILLLPALVAGVAACQRELARRPSKADPTFR
RVGPVHKVWAYSLLVSVLVGAWMKLQSDHIGSHPMFLWQPCHTHSVVLAA
TSLVDAQWARAVFHVAVTLWWGPFLALVAPDLPSEPIHIALFYIQHVLMM
AA
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mRNA from alignment at P-wetherbeei_contig20884:731..1186+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20884.1.1 ID=mRNA_P-wetherbeei_contig20884.1.1|Name=mRNA_P-wetherbeei_contig20884.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig20884:731..1186+ (Phaeothamnion wetherbeei SAG_119_79)
TATCGGTCCAAATGGTTCCTTACACCACGTCAACACGTGGTCGAGGCACT
GGGGTCCGTCATTCTACTCCTACCGGCCCTCGTCGCTGGCGTCGCGGCGT
GCCAGCGGGAGCTGGCCAGGCGCCCTTCCAAGGCGGATCCGACGTTTCGC
CGCGTTGGTCCGGTCCACAAGGTCTGGGCGTACTCGCTGCTGGTGTCCGT
GCTGGTAGGCGCGTGGATGAAGCTGCAGTCGGACCACATCGGCTCGCACC
CAATGTTCCTGTGGCAGCCCTGCCACACGCACAGCGTTGTCCTCGCGGCG
ACATCGCTGGTGGACGCGCAGTGGGCGCGCGCCGTCTTCCACGTCGCCGT
CACATTATGGTGGGGTCCGTTCTTGGCGCTGGTGGCGCCAGACCTCCCCA
GCGAGCCCATCCATATCGCGCTCTTTTACATTCAGCACGTGCTGATGATG
GCGGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20884:731..1186+

>mRNA_P-wetherbeei_contig20884.1.1 ID=mRNA_P-wetherbeei_contig20884.1.1|Name=mRNA_P-wetherbeei_contig20884.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig20884:731..1186+ (Phaeothamnion wetherbeei SAG_119_79)
TATCGGTCCAAATGGTTCCTTACACCACGTCAACACGTGGTCGAGGCACT
GGGGTCCGTCATTCTACTCCTACCGGCCCTCGTCGCTGGCGTCGCGGCGT
GCCAGCGGGAGCTGGCCAGGCGCCCTTCCAAGGCGGATCCGACGTTTCGC
CGCGTTGGTCCGGTCCACAAGGTCTGGGCGTACTCGCTGCTGGTGTCCGT
GCTGGTAGGCGCGTGGATGAAGCTGCAGTCGGACCACATCGGCTCGCACC
CAATGTTCCTGTGGCAGCCCTGCCACACGCACAGCGTTGTCCTCGCGGCG
ACATCGCTGGTGGACGCGCAGTGGGCGCGCGCCGTCTTCCACGTCGCCGT
CACATTATGGTGGGGTCCGTTCTTGGCGCTGGTGGCGCCAGACCTCCCCA
GCGAGCCCATCCATATCGCGCTCTTTTACATTCAGCACGTGCTGATGATG
GCGGCT
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