mRNA_P-wetherbeei_contig20857.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20857.1.1
Unique NamemRNA_P-wetherbeei_contig20857.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20857.1.1 vs. uniprot
Match: A0A6L5FG13_9HYPH (MFS transporter n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FG13_9HYPH)

HSP 1 Score: 307 bits (786), Expect = 2.160e-99
Identity = 159/265 (60.00%), Postives = 197/265 (74.34%), Query Frame = 1
Query:   22 PSRLFALCLAGIVLIGPLAVHLFLPVIPAVKAEFALTDATAQLTFSSGIFAMALSTLAYGTLSDRYGRRPVLLAGLGLFLAGCAIVATASTFGMLLTGRIVQAVGAGCGTALVRSIARDAYGQAQLVKAISYLTMFYTLGPMIAPMVGGLLIDAFGWRSAFVFALIFGAVISAGAGLVIYETHTGTRIPLDAVAVLRSYVDPFRNPRFASFVLQSGFSSGIFFTLTAAVSVIMKEQLGRSATEYGVWFLAFPVGFLIGNIVSSRL 816
            P  LFAL LA I LIGPLAVHLF+PVIPAVKA FA++DA AQLTFS  +FAMA +TLAYG+L+DRYGRRPVLL+GL LFL G  I A A T   L+ GR+VQA+GAGCG  LVR+IARDAYG  +LVK ++YLTMFYT+GPMI+P +GG+L+D FGWRS F FAL+ G+VI+  A L +YET            VL  YV  F +PRF +FVLQSGF S  F T  +A + +M E L R  TE+G++FLAFP+G+  GN+++SR+
Sbjct:   61 PGPLFALALASIALIGPLAVHLFMPVIPAVKAAFAVSDAVAQLTFSIALFAMAFATLAYGSLADRYGRRPVLLSGLCLFLVGSVISAIADTAWALVLGRLVQAIGAGCGMTLVRTIARDAYGPDRLVKVLAYLTMFYTIGPMISPAIGGILVDTFGWRSVFGFALLLGSVIALAAYLAVYETRPRAETAQAGPGVLGGYVALFAHPRFTAFVLQSGFCSASFMTAASASATLMPEYLHRPPTEFGLYFLAFPLGYFGGNLIASRV 325          
BLAST of mRNA_P-wetherbeei_contig20857.1.1 vs. uniprot
Match: A0A537NDK5_9PROT (Multidrug effflux MFS transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NDK5_9PROT)

HSP 1 Score: 281 bits (720), Expect = 4.100e-90
Identity = 152/264 (57.58%), Postives = 186/264 (70.45%), Query Frame = 1
Query:   25 SRLFALCLAGIVLIGPLAVHLFLPVIPAVKAEFALTDATAQLTFSSGIFAMALSTLAYGTLSDRYGRRPVLLAGLGLFLAGCAIVATASTFGMLLTGRIVQAVGAGCGTALVRSIARDAYGQAQLVKAISYLTMFYTLGPMIAPMVGGLLIDAFGWRSAFVFALIFGAVISAGAGLVIYETHTGTRIPLDAVAVLRSYVDPFRNPRFASFVLQSGFSSGIFFTLTAAVSVIMKEQLGRSATEYGVWFLAFPVGFLIGNIVSSRL 816
             R FA  L  + LI PLAVHLFLPVIPAVK    L D+ AQLTF+  +FAMA +TL YG+LSDRYGRRP+LL+GL LFL G AI A A T  +L  GR+VQAVGAGC   LVR+IARDAY    LV+AI+YLTMFYTLGPM+AP+VGG+LID  GWRS F FALI G +I+  A L I ET       L  + +LR Y + F  P+F  +VLQSGF++  F T+ +A + +MKE L R ++E+G +FL FPVGF  G  VSSR+
Sbjct:    9 GRGFAFALGLVALITPLAVHLFLPVIPAVKLALGLPDSAAQLTFTIALFAMAFATLVYGSLSDRYGRRPLLLSGLVLFLIGSAISAIAQTAPVLALGRLVQAVGAGCSMTLVRTIARDAYRAEHLVRAIAYLTMFYTLGPMLAPLVGGVLIDTLGWRSVFGFALIAGGIITVAAYLGIPETRPPRDPALAQIELLRGYAELFSRPQFVGYVLQSGFNTAAFMTMASASATLMKELLHRPSSEFGFYFLLFPVGFFFGTFVSSRV 272          
BLAST of mRNA_P-wetherbeei_contig20857.1.1 vs. uniprot
Match: A0A521XMJ4_9PROT (Bcr/CflA family efflux transporter n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521XMJ4_9PROT)

HSP 1 Score: 281 bits (718), Expect = 8.210e-90
Identity = 142/266 (53.38%), Postives = 189/266 (71.05%), Query Frame = 1
Query:   22 PSRLFALCLAGIVLIGPLAVHLFLPVIPAVKAEFALTDATAQLTFSSGIFAMALSTLAYGTLSDRYGRRPVLLAGLGLFLAGCAIVATASTFGMLLTGRIVQAVGAGCGTALVRSIARDAYGQAQLVKAISYLTMFYTLGPMIAPMVGGLLIDAFGWRSAFVFALIFGAVISAGAGLVIYETHTGTRIPLDAVAVLRSYVDPFRNPRFASFVLQSGFSSGIFFTLTAAVSVIMKEQLGRSATEYGVWFLAFPVGFLIGNIVSSRLA 819
            P+R F + LA I LIGPLA+H+FLP +P +K+ FA++DA   LT+S+ +  MA+STL YG+LSDRYGRRPVLL GL LF  G  +   A +   L+ GR++QA GAGCG  L R+IARDAYG   LVK I+YLTM YTLGPM+A + GG+LID  GWRS F  A I G +I+  + +V+YET             L+ YV  F + RF +FVLQ+GFSSG+F+ + AA S +MK+ LGRSATE+G +F+AFP+GF +GN++SSR++
Sbjct:    5 PNRRFLVTLASISLIGPLAIHMFLPAMPVIKSVFAISDALVGLTYSAALLVMAVSTLMYGSLSDRYGRRPVLLVGLALFTLGSGVSGIADSVYGLIAGRVIQAFGAGCGVTLARAIARDAYGTEGLVKVIAYLTMAYTLGPMLATLFGGMLIDLAGWRSLFWLAAIAGVLITTASRVVLYETRPKEDTQRKPSGFLQDYVALFSHARFTAFVLQTGFSSGLFYAMAAASSFLMKDYLGRSATEFGAYFMAFPIGFFLGNLLSSRVS 270          
BLAST of mRNA_P-wetherbeei_contig20857.1.1 vs. uniprot
Match: A0A127EMX9_9HYPH (Bcr/CflA family efflux transporter n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EMX9_9HYPH)

HSP 1 Score: 280 bits (715), Expect = 2.260e-89
Identity = 148/264 (56.06%), Postives = 187/264 (70.83%), Query Frame = 1
Query:   25 SRLFALCLAGIVLIGPLAVHLFLPVIPAVKAEFALTDATAQLTFSSGIFAMALSTLAYGTLSDRYGRRPVLLAGLGLFLAGCAIVATASTFGMLLTGRIVQAVGAGCGTALVRSIARDAYGQAQLVKAISYLTMFYTLGPMIAPMVGGLLIDAFGWRSAFVFALIFGAVISAGAGLVIYETHTGTRIPLDAVAVLRSYVDPFRNPRFASFVLQSGFSSGIFFTLTAAVSVIMKEQLGRSATEYGVWFLAFPVGFLIGNIVSSRL 816
             R FA+ L  I LI PLAVHLF PVIPAVK    L+DA AQLTFS  +F MA +TL YG+LSDRYGRRPVLL+GL LFL G  + + A+T   L+ GR+VQA+GAGC   LVR+IARDA+   QLVKAI+YLTMF TLGPM++P +GG+LID  GWRS F FAL+ G VI+  A +V+ ETH          + ++SY   FR PRF ++VLQ+GF++G F  +  A S +M E L R ATEYG++FL FP+GF  GN +S+R+
Sbjct:    9 GRTFAIALGLIALITPLAVHLFFPVIPAVKKALGLSDAHAQLTFSISLFGMAFATLFYGSLSDRYGRRPVLLSGLALFLFGSVVSSLATTANALVLGRLVQAIGAGCALTLVRAIARDAFRAEQLVKAIAYLTMFGTLGPMVSPFIGGVLIDTLGWRSVFGFALVAGGVITIIAYMVMRETHPPENRHKTQESFVQSYAALFRRPRFNAYVLQTGFNTGAFMVMAVAASTMMTELLRRPATEYGLYFLLFPMGFFAGNFISTRV 272          
BLAST of mRNA_P-wetherbeei_contig20857.1.1 vs. uniprot
Match: A0A6N7GY13_9HYPH (MFS transporter n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GY13_9HYPH)

HSP 1 Score: 280 bits (717), Expect = 3.890e-89
Identity = 150/266 (56.39%), Postives = 188/266 (70.68%), Query Frame = 1
Query:   22 PSRLFALCLAGIVLIGPLAVHLFLPVIPAVKAEFALTDATAQLTFSSGIFAMALSTLAYGTLSDRYGRRPVLLAGLGLFLAGCAIVATASTFGMLLTGRIVQAVGAGCGTALVRSIARDAYGQAQLVKAISYLTMFYTLGPMIAPMVGGLLIDAFGWRSAFVFALIFGAVISAGAGLVIYETHTGTRIPLDAVAVLRSYVDPFRNPRFASFVLQSGFSSGIFFTLTAAVSVIMKEQLGRSATEYGVWFLAFPVGFLIGNIVSSRLA 819
            PSRLFA  LA I LIGP+ +HL+ PVIP VK    L+DA AQLTFS  +F MA +TLAYG LSDRYGRR ++L+GL +FL G      A +  M++ GR +QA+GA CG  LVR+IA D YG  QLVK I+YLTMFYTLGPMI+PMVGGLLID  GWRS F FAL+ G++I AGA   I ET +  R P  A + LR Y +   + RF+ FVLQ+GFS+G F T+  A S  MKE L R + E+G++FL FP+GFL G+ +S+RL+
Sbjct:   48 PSRLFAPVLASISLIGPMVIHLYFPVIPVVKIALRLSDAEAQLTFSIALFCMAFATLAYGALSDRYGRRRLMLSGLSIFLFGSVFAFAAESIAMMVIGRSLQAIGAACGVTLVRAIASDVYGPGQLVKVIAYLTMFYTLGPMISPMVGGLLIDTLGWRSVFGFALVVGSLILAGAYAAIPETRSAER-PAQA-SFLRGYRELLGSIRFSPFVLQTGFSTGTFLTIATASSAFMKELLDRPSFEFGLYFLLFPLGFLFGSFISTRLS 311          
BLAST of mRNA_P-wetherbeei_contig20857.1.1 vs. uniprot
Match: A0A1F4G4D9_9PROT (MFS domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4G4D9_9PROT)

HSP 1 Score: 278 bits (710), Expect = 8.410e-89
Identity = 146/258 (56.59%), Postives = 186/258 (72.09%), Query Frame = 1
Query:   46 LAGIVLIGPLAVHLFLPVIPAVKAEFALTDATAQLTFSSGIFAMALSTLAYGTLSDRYGRRPVLLAGLGLFLAGCAIVATASTFGMLLTGRIVQAVGAGCGTALVRSIARDAYGQAQLVKAISYLTMFYTLGPMIAPMVGGLLIDAFGWRSAFVFALIFGAVISAGAGLVIYETHTGTRIPLDAVAVLRSYVDPFRNPRFASFVLQSGFSSGIFFTLTAAVSVIMKEQLGRSATEYGVWFLAFPVGFLIGNIVSSRLA 819
            LA + LIGPLA+H FLPV+P VK+EF ++DA A LTFS  +F +A +TL YG+LSDRYGRRPVLLAGL LF  G  + A +S+   LL GRI+QA+GAG    L R+IARD YG   LVK I+YLTM Y LGPMIAP+  GLL+D+ GWR AF FA + GA+I+A A +V+YETH          + L  YV  F + RF +FVLQSGFS+G FF + AA + +MK+ LGRSATE+ ++FLAFP G+ +GN+ SSRL+
Sbjct:    3 LASVTLIGPLALHAFLPVMPEVKSEFGISDALAGLTFSISLFIIAFATLVYGSLSDRYGRRPVLLAGLALFTLGSIVSALSSSVTGLLVGRIIQALGAGGSGGLARAIARDTYGTDVLVKVIAYLTMAYALGPMIAPVAAGLLVDSTGWRGAFWFAALAGALIAAAAYVVLYETHAPEHRAQRGSSFLHDYVRLFSHLRFTAFVLQSGFSTGCFFAMAAANAFLMKDYLGRSATEFSMYFLAFPAGYFLGNLASSRLS 260          
BLAST of mRNA_P-wetherbeei_contig20857.1.1 vs. uniprot
Match: A0A1F4D9V0_9PROT (Bcr/CflA family efflux transporter n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4D9V0_9PROT)

HSP 1 Score: 278 bits (712), Expect = 1.300e-88
Identity = 142/273 (52.01%), Postives = 192/273 (70.33%), Query Frame = 1
Query:    1 RKLRALMPSRLFALCLAGIVLIGPLAVHLFLPVIPAVKAEFALTDATAQLTFSSGIFAMALSTLAYGTLSDRYGRRPVLLAGLGLFLAGCAIVATASTFGMLLTGRIVQAVGAGCGTALVRSIARDAYGQAQLVKAISYLTMFYTLGPMIAPMVGGLLIDAFGWRSAFVFALIFGAVISAGAGLVIYETHTGTRIPLDAVAVLRSYVDPFRNPRFASFVLQSGFSSGIFFTLTAAVSVIMKEQLGRSATEYGVWFLAFPVGFLIGNIVSSRLA 819
            R +R +   R FA  LA I LIGPLA+H++LP +P +K+ F ++DA    T+S+ +  MA +TL YG+LSDRYGRRPVL AGL  F  G  +   A +F  L+ GR++QA+GAGCG  L R+IARDAYG  +LVK I+YLTM YTLGP++A + GG+L+D  GWRS F  A   G +I+A +GLV+YETH  +         +R Y   F + RF +FVLQSGFSSG+F+ L AA S +MK+ LGRS TE+GV+F+AFP+G+ +GN++SSRL+
Sbjct:   20 RVMRRVPDWRFFA-TLASISLIGPLAIHMYLPAMPVIKSTFEVSDALVGWTYSAALVVMAAATLIYGSLSDRYGRRPVLFAGLLFFTIGSVVSGLAGSFYGLIAGRVIQALGAGCGLTLARAIARDAYGHDELVKVIAYLTMAYTLGPLMATLFGGVLVDTAGWRSLFALAAAAGVLIAAASGLVMYETHPKSDSQRKPSGFIREYAALFSHARFTAFVLQSGFSSGVFYPLAAAASFLMKDHLGRSGTEFGVYFIAFPIGYFLGNLLSSRLS 291          
BLAST of mRNA_P-wetherbeei_contig20857.1.1 vs. uniprot
Match: A0A1H4L1C3_9HYPH (Bcr/CflA family efflux transporter n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1H4L1C3_9HYPH)

HSP 1 Score: 276 bits (705), Expect = 6.650e-88
Identity = 140/268 (52.24%), Postives = 190/268 (70.90%), Query Frame = 1
Query:   13 ALMPSRLFALCLAGIVLIGPLAVHLFLPVIPAVKAEFALTDATAQLTFSSGIFAMALSTLAYGTLSDRYGRRPVLLAGLGLFLAGCAIVATASTFGMLLTGRIVQAVGAGCGTALVRSIARDAYGQAQLVKAISYLTMFYTLGPMIAPMVGGLLIDAFGWRSAFVFALIFGAVISAGAGLVIYETHTGTRIPLDAVAVLRSYVDPFRNPRFASFVLQSGFSSGIFFTLTAAVSVIMKEQLGRSATEYGVWFLAFPVGFLIGNIVSSRL 816
            A  P R+FAL LA I L+ P A+HLFLPV P +K  F ++DA AQ++FS  +  MA + L YG L+DRYGRRPVLL+GL LFL G  +   A++   L+  R+VQAVGAGCGT LVR+IARDAYG  +LVK ISYLTMFYTLGPM++P V GLL+D F WR+  +F+   GA+I  G  L + ET  G ++     +VL +Y + F +PRF ++VLQ GFS+ +FF+++AA + +MK+ L R +TE+G++F  FP+GF  GN +SSR+
Sbjct:    2 AFQPGRIFALALASIGLLTPFAIHLFLPVTPVLKEAFGISDALAQISFSLPLLVMAFANLVYGALADRYGRRPVLLSGLALFLIGSLLGMLANSITTLIIARVVQAVGAGCGTTLVRAIARDAYGPDKLVKVISYLTMFYTLGPMVSPTVAGLLLDHFTWRAVMIFSFASGAIIMLGTYLYVPETRPGVKLA-PGQSVLGNYRELFAHPRFIAYVLQPGFSTAVFFSISAASAFVMKDMLHRPSTEFGLYFFLFPLGFFSGNFISSRI 268          
BLAST of mRNA_P-wetherbeei_contig20857.1.1 vs. uniprot
Match: A0A1F3YK50_9PROT (Bcr/CflA family efflux transporter n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F3YK50_9PROT)

HSP 1 Score: 274 bits (701), Expect = 5.750e-87
Identity = 140/266 (52.63%), Postives = 187/266 (70.30%), Query Frame = 1
Query:   22 PSRLFALCLAGIVLIGPLAVHLFLPVIPAVKAEFALTDATAQLTFSSGIFAMALSTLAYGTLSDRYGRRPVLLAGLGLFLAGCAIVATASTFGMLLTGRIVQAVGAGCGTALVRSIARDAYGQAQLVKAISYLTMFYTLGPMIAPMVGGLLIDAFGWRSAFVFALIFGAVISAGAGLVIYETHTGTRIPLDAVAVLRSYVDPFRNPRFASFVLQSGFSSGIFFTLTAAVSVIMKEQLGRSATEYGVWFLAFPVGFLIGNIVSSRLA 819
            P   F   LA I L+GPLA+H+FLP +P +K+ FA++DA   LT+S+ +  MA+STL YG+LSDRYGRRPVLLAGL LF  G  +   A +   L+ GR++QA+GAGCG  L R+IARDAYG   LVK I+YLTM YTLGPM+A + GG+LID  GWRS F  A   G +I+  +  ++YETH            +  +V  F + RF +FVLQ+GFSSG+F+ + AA S +MK+ LGRSATE+G++F+AFPVGF +GN++SSRL+
Sbjct:   25 PDWRFLATLASISLVGPLAIHMFLPAMPVIKSVFAISDALVGLTYSAALLVMAVSTLIYGSLSDRYGRRPVLLAGLFLFTLGSFVSGMADSVYGLIAGRVIQALGAGCGVTLARAIARDAYGTEGLVKVIAYLTMAYTLGPMLATLFGGMLIDMAGWRSLFWLAATSGLLIATASWGMLYETHPKDESRRKTSGFVHDFVALFSHLRFTAFVLQTGFSSGLFYAMAAAASFLMKDYLGRSATEFGIYFMAFPVGFFLGNLLSSRLS 290          
BLAST of mRNA_P-wetherbeei_contig20857.1.1 vs. uniprot
Match: A0A6N7FCS7_9PROT (Bcr/CflA family efflux transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FCS7_9PROT)

HSP 1 Score: 270 bits (689), Expect = 2.310e-85
Identity = 144/266 (54.14%), Postives = 183/266 (68.80%), Query Frame = 1
Query:   22 PSRLFALCLAGIVLIGPLAVHLFLPVIPAVKAEFALTDATAQLTFSSGIFAMALSTLAYGTLSDRYGRRPVLLAGLGLFLAGCAIVATASTFGMLLTGRIVQAVGAGCGTALVRSIARDAYGQAQLVKAISYLTMFYTLGPMIAPMVGGLLIDAFGWRSAFVFALIFGAVISAGAGLVIYETHTGTRIPLDAVAVLRSYVDPFRNPRFASFVLQSGFSSGIFFTLTAAVSVIMKEQLGRSATEYGVWFLAFPVGFLIGNIVSSRLA 819
            P  +F L LA +  IGPLAVH FLPV+P+V+  F +++A AQLTFS  +F MA +TLAYG+LSDR+GRRPVLL+G+GLFLAG  + A A +            VGA C   L R+IARD +G+A LV+A+SYLTM YTLGPMIAP +GG L+DAFGWRS F  AL  GA I A    V++ET       +     L  Y    RN RF ++V Q+GFSSG FFTL A  S +M++ LGRSA+EYG++FL FPVG+ +GN+VSSRL+
Sbjct:   12 PGWVFLLTLASVSFIGPLAVHFFLPVMPSVRDAFGVSEALAQLTFSISLFVMAFATLAYGSLSDRHGRRPVLLSGIGLFLAGSVLSALADSXXXXXXXXXXXXVGAACSMTLTRAIARDLFGEAGLVRALSYLTMAYTLGPMIAPPLGGFLVDAFGWRSVFWTALGLGAAIGAVVLSVLHETRAKPEAGVRRQGYLADYAMLCRNLRFVAYVCQTGFSSGTFFTLAAGASFLMRDHLGRSASEYGLYFLFFPVGYWVGNLVSSRLS 277          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20857.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L5FG13_9HYPH2.160e-9960.00MFS transporter n=1 Tax=Hyphomicrobiales bacterium... [more]
A0A537NDK5_9PROT4.100e-9057.58Multidrug effflux MFS transporter n=1 Tax=Alphapro... [more]
A0A521XMJ4_9PROT8.210e-9053.38Bcr/CflA family efflux transporter n=2 Tax=unclass... [more]
A0A127EMX9_9HYPH2.260e-8956.06Bcr/CflA family efflux transporter n=1 Tax=Rhodopl... [more]
A0A6N7GY13_9HYPH3.890e-8956.39MFS transporter n=1 Tax=Hyphomicrobiales bacterium... [more]
A0A1F4G4D9_9PROT8.410e-8956.59MFS domain-containing protein n=2 Tax=unclassified... [more]
A0A1F4D9V0_9PROT1.300e-8852.01Bcr/CflA family efflux transporter n=2 Tax=unclass... [more]
A0A1H4L1C3_9HYPH6.650e-8852.24Bcr/CflA family efflux transporter n=2 Tax=Hyphomi... [more]
A0A1F3YK50_9PROT5.750e-8752.63Bcr/CflA family efflux transporter n=3 Tax=unclass... [more]
A0A6N7FCS7_9PROT2.310e-8554.14Bcr/CflA family efflux transporter n=1 Tax=Alphapr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20857contigP-wetherbeei_contig20857:3..821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog420324.KI911999_gene8061
Preferred nameMA20_01870
PFAMsMFS_1
Model size819
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07552
KEGG TC2.A.1.2
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.89e-53
EggNOG OGsCOG0477@1|root,COG2814@2|Bacteria,1MW19@1224|Proteobacteria,2TRQD@28211|Alphaproteobacteria,1JSDN@119045|Methylobacteriaceae
DescriptionTIGRFAM drug resistance transporter, Bcr CflA subfamily
Cds size801
COG categoryEGP
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186210.5489314-CDS-P-wetherbeei_contig20857:2..8031683186210.5489314-CDS-P-wetherbeei_contig20857:2..803Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20857 3..803 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186210.5592794-UTR-P-wetherbeei_contig20857:803..8211683186210.5592794-UTR-P-wetherbeei_contig20857:803..821Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20857 804..821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20857.1.1prot_P-wetherbeei_contig20857.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20857 3..803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20857.1.1

>prot_P-wetherbeei_contig20857.1.1 ID=prot_P-wetherbeei_contig20857.1.1|Name=mRNA_P-wetherbeei_contig20857.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp
MPSRLFALCLAGIVLIGPLAVHLFLPVIPAVKAEFALTDATAQLTFSSGI
FAMALSTLAYGTLSDRYGRRPVLLAGLGLFLAGCAIVATASTFGMLLTGR
IVQAVGAGCGTALVRSIARDAYGQAQLVKAISYLTMFYTLGPMIAPMVGG
LLIDAFGWRSAFVFALIFGAVISAGAGLVIYETHTGTRIPLDAVAVLRSY
VDPFRNPRFASFVLQSGFSSGIFFTLTAAVSVIMKEQLGRSATEYGVWFL
AFPVGFLIGNIVSSRLA
back to top

mRNA from alignment at P-wetherbeei_contig20857:3..821-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20857.1.1 ID=mRNA_P-wetherbeei_contig20857.1.1|Name=mRNA_P-wetherbeei_contig20857.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=819bp|location=Sequence derived from alignment at P-wetherbeei_contig20857:3..821- (Phaeothamnion wetherbeei SAG_119_79)
CGCAAACTACGAGCCCTCATGCCATCCCGCCTGTTCGCGCTCTGTCTTGC CGGCATCGTCCTGATCGGGCCGCTGGCGGTTCACTTGTTCCTCCCCGTGA TTCCGGCCGTGAAAGCGGAGTTCGCCCTCACCGATGCGACCGCGCAATTG ACGTTCAGCAGCGGCATCTTTGCGATGGCGCTGTCGACGCTCGCGTATGG GACACTTTCCGATCGTTACGGCAGGCGTCCTGTGCTTCTGGCTGGGTTGG GCCTCTTTCTCGCGGGATGCGCGATTGTCGCGACCGCCTCGACATTCGGC ATGCTGCTGACCGGCCGGATCGTTCAGGCGGTCGGTGCGGGTTGCGGGAC GGCGTTGGTCCGATCGATCGCGCGCGATGCCTACGGGCAAGCGCAGTTGG TCAAGGCGATATCGTACCTGACGATGTTCTATACGCTGGGGCCGATGATC GCGCCGATGGTCGGCGGGTTGCTGATCGACGCCTTTGGCTGGCGCTCGGC GTTTGTGTTCGCATTGATCTTCGGCGCGGTCATCTCGGCTGGCGCCGGGC TGGTGATCTACGAAACGCACACGGGAACTCGAATTCCCCTCGATGCCGTC GCCGTCTTGCGCAGCTACGTCGATCCGTTCCGCAATCCGCGATTCGCTTC GTTCGTGCTGCAGTCCGGCTTCTCGAGCGGAATTTTCTTCACGCTGACGG CGGCGGTGTCGGTCATCATGAAGGAACAACTCGGACGTTCCGCGACGGAG TACGGTGTCTGGTTTCTTGCGTTTCCTGTTGGTTTCCTGATCGGCAACAT CGTGTCGAGCCGGCTGGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20857:3..821-

>mRNA_P-wetherbeei_contig20857.1.1 ID=mRNA_P-wetherbeei_contig20857.1.1|Name=mRNA_P-wetherbeei_contig20857.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig20857:3..821- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCATCCCGCCTGTTCGCGCTCTGTCTTGCCGGCATCGTCCTGATCGG
GCCGCTGGCGGTTCACTTGTTCCTCCCCGTGATTCCGGCCGTGAAAGCGG
AGTTCGCCCTCACCGATGCGACCGCGCAATTGACGTTCAGCAGCGGCATC
TTTGCGATGGCGCTGTCGACGCTCGCGTATGGGACACTTTCCGATCGTTA
CGGCAGGCGTCCTGTGCTTCTGGCTGGGTTGGGCCTCTTTCTCGCGGGAT
GCGCGATTGTCGCGACCGCCTCGACATTCGGCATGCTGCTGACCGGCCGG
ATCGTTCAGGCGGTCGGTGCGGGTTGCGGGACGGCGTTGGTCCGATCGAT
CGCGCGCGATGCCTACGGGCAAGCGCAGTTGGTCAAGGCGATATCGTACC
TGACGATGTTCTATACGCTGGGGCCGATGATCGCGCCGATGGTCGGCGGG
TTGCTGATCGACGCCTTTGGCTGGCGCTCGGCGTTTGTGTTCGCATTGAT
CTTCGGCGCGGTCATCTCGGCTGGCGCCGGGCTGGTGATCTACGAAACGC
ACACGGGAACTCGAATTCCCCTCGATGCCGTCGCCGTCTTGCGCAGCTAC
GTCGATCCGTTCCGCAATCCGCGATTCGCTTCGTTCGTGCTGCAGTCCGG
CTTCTCGAGCGGAATTTTCTTCACGCTGACGGCGGCGGTGTCGGTCATCA
TGAAGGAACAACTCGGACGTTCCGCGACGGAGTACGGTGTCTGGTTTCTT
GCGTTTCCTGTTGGTTTCCTGATCGGCAACATCGTGTCGAGCCGGCTGGC
G
back to top