mRNA_P-wetherbeei_contig2079.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2079.2.1
Unique NamemRNA_P-wetherbeei_contig2079.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2079.2.1 vs. uniprot
Match: W1PCB2_AMBTC (Uncharacterized protein n=4 Tax=Amborella trichopoda TaxID=13333 RepID=W1PCB2_AMBTC)

HSP 1 Score: 55.5 bits (132), Expect = 4.630e-6
Identity = 46/162 (28.40%), Postives = 80/162 (49.38%), Query Frame = 1 
Query:    1 GLATLKGLILGKPTARDVCLDAVLRFTLRQEPELQRTAVQLSVNILWPVNPFKATVAGFADEALRSALPDPPPAPATGVAVAVTKPEQALTVVDNDAG---GGDVDDVRGDAAKGVAAG----------AVGSDEEAASRLALYFALCTRSRQKLKNLFLSY 447
            GL+ +  LIL +P  RD+CL+  L+ T+    E++  A++L  N L+P++     +  FA E LRS +       A G +  + +   +   +D+  G   GG +    G A   +++           +  S  EA   ++L+FALCT+ R  L+ +FL+Y
Sbjct:  851 GLSAVWSLILSRPPIRDLCLNIALQSTVHHMEEVRMKAIRLVANKLYPLSFISQKIENFATEMLRSVVNGN----AGGESTNIDRSNLSGGQIDSTEGVPKGGQLLKEAGLATADISSNINDSSSAKTLSSSSISEAQRCMSLFFALCTKKRSLLREIFLNY 1008
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2079.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
W1PCB2_AMBTC4.630e-628.40Uncharacterized protein n=4 Tax=Amborella trichopo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2079contigP-wetherbeei_contig2079:5580..6140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FRB7
PFAMsDUF3453,Symplekin_C
Model size447
Max annot lvl2759|Eukaryota
KEGG koko:K06100
KEGG Pathwayko03015,ko04530,map03015,map04530
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.39e-08
EggNOG OGsKOG1895@1|root,KOG1895@2759|Eukaryota
DescriptionmRNA polyadenylation
Cds size447
COG categoryS
BRITEko00000,ko00001,ko03019,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186208.5183675-CDS-P-wetherbeei_contig2079:5579..59431683186208.5183675-CDS-P-wetherbeei_contig2079:5579..5943Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2079 5580..5943 +
1683186208.5299404-CDS-P-wetherbeei_contig2079:6057..61401683186208.5299404-CDS-P-wetherbeei_contig2079:6057..6140Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2079 6058..6140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2079.2.1prot_P-wetherbeei_contig2079.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2079 5580..6140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2079.2.1

>prot_P-wetherbeei_contig2079.2.1 ID=prot_P-wetherbeei_contig2079.2.1|Name=mRNA_P-wetherbeei_contig2079.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
GLATLKGLILGKPTARDVCLDAVLRFTLRQEPELQRTAVQLSVNILWPVN
PFKATVAGFADEALRSALPDPPPAPATGVAVAVTKPEQALTVVDNDAGGG
DVDDVRGDAAKGVAAGAVGSDEEAASRLALYFALCTRSRQKLKNLFLSY
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mRNA from alignment at P-wetherbeei_contig2079:5580..6140+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2079.2.1 ID=mRNA_P-wetherbeei_contig2079.2.1|Name=mRNA_P-wetherbeei_contig2079.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=561bp|location=Sequence derived from alignment at P-wetherbeei_contig2079:5580..6140+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCTGGCGACCCTCAAGGGGCTCATCTTGGGCAAGCCCACGGCACGGGA
CGTCTGCTTGGATGCCGTGCTCCGCTTCACGCTGCGGCAGGAGCCGGAGC
TGCAGCGGACGGCCGTCCAGCTGTCCGTCAACATCCTGTGGCCCGTGAAC
CCGTTCAAAGCGACGGTCGCCGGCTTCGCGGACGAGGCGCTGCGGTCGGC
ACTTCCGGATCCGCCGCCGGCACCGGCGACGGGGGTGGCGGTTGCGGTGA
CGAAGCCTGAACAGGCGCTGACGGTTGTAGATAATGATGCTGGCGGCGGC
GATGTCGACGACGTGAGAGGCGATGCAGCGAAGGGTGTCGCTGCAGGCGC
GGTTGGCAGCGACGGTGCATCTGCCGCTGCCGCTGCCGCCGCAGCTGCGG
GGGAGGCAGAGACTGCGGCGGCGGCGGCGCGGCGGCCGCGGCTCGCGCAC
CTGTGGCCATCGCCGCCGGCGACCGAAGAGGAGGCTGCCAGTCGACTTGC
ACTCTACTTTGCACTGTGCACGCGGTCGCGACAGAAGCTTAAGAACCTCT
TCCTGTCATAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2079:5580..6140+

>mRNA_P-wetherbeei_contig2079.2.1 ID=mRNA_P-wetherbeei_contig2079.2.1|Name=mRNA_P-wetherbeei_contig2079.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig2079:5580..6140+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCTGGCGACCCTCAAGGGGCTCATCTTGGGCAAGCCCACGGCACGGGA
CGTCTGCTTGGATGCCGTGCTCCGCTTCACGCTGCGGCAGGAGCCGGAGC
TGCAGCGGACGGCCGTCCAGCTGTCCGTCAACATCCTGTGGCCCGTGAAC
CCGTTCAAAGCGACGGTCGCCGGCTTCGCGGACGAGGCGCTGCGGTCGGC
ACTTCCGGATCCGCCGCCGGCACCGGCGACGGGGGTGGCGGTTGCGGTGA
CGAAGCCTGAACAGGCGCTGACGGTTGTAGATAATGATGCTGGCGGCGGC
GATGTCGACGACGTGAGAGGCGATGCAGCGAAGGGTGTCGCTGCAGGCGC
GGTTGGCAGCGACGAGGAGGCTGCCAGTCGACTTGCACTCTACTTTGCAC
TGTGCACGCGGTCGCGACAGAAGCTTAAGAACCTCTTCCTGTCATAT
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