mRNA_P-wetherbeei_contig20774.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig20774.1.1
Unique Name	mRNA_P-wetherbeei_contig20774.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig20774.1.1 vs. uniprot
Match: A0A836C9J1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9J1_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.380e-22
Identity = 72/219 (32.88%), Postives = 102/219 (46.58%), Query Frame = 1

Query:   19 QESKPLAVNAKQFVAAMTDQTVLNDARQREGLAELLVSAASSLSMQTPVYALIAALLSQPAAAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGGGGDDAEPAPSFGRLIVDGVCGALTEALVAGAFIRAKMLLRFLGELANVHLVRYSELGDVLAAMSALYVEGDDPAIKQPCRDLVAYCVAAALPWCGPGLYRHWPAGLSRLVDAL 675
            + S+ LA N    +  +    V +   Q   +A L+V AA+SL MQ+PVYAL+ AL +      EG                                            AE    FGRL+VDGVC  L+ AL +GAF+R K+L+RFLGEL + +L+   E G VL ++   YV G+   + QPC D++A  V  AL W GP L+      L  L++ +
Sbjct:   40 ESSESLAKNVVIIIGHLEGHAVFDGGAQMAAVAALMVEAAASLGMQSPVYALMTALCATKGGTPEGEEAKFESEQAAAA-------------------------------AEEKKPFGRLVVDGVCAELSAALKSGAFLRVKLLVRFLGELVSCNLISAQEFGWVLTSLVDSYVCGNG--VLQPCADVIAGIVIVALAWSGPVLHDRRKRVLDELMEKI 225

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BLAST of mRNA_P-wetherbeei_contig20774.1.1 vs. uniprot
Match: D8LFZ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFZ4_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.870e-17
Identity = 86/226 (38.05%), Postives = 107/226 (47.35%), Query Frame = 1

Query:    1 RNGWAEQESKPLAVNAKQFVAAMTDQTVLNDARQREGLAELLVSAASSLSMQTPVYALIAALLSQPAAAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGGGGDDAEPAPSFGRLIVDGVCGALTEALVAGAFIRAKMLLRFLGELANVHLVRYSELGDVLAAMSALYVEGDDPAIKQPCRDLVAYCVAAALPWCGPGLYRHWPAGLSRLVDALR 678
            R+G+A+   +  AV   + ++A   +  L+     E +A LLV AA +LS+QTPVYAL  AL    A + +         XXXXXXXXXXX                       D  E  PSFGRL+VDG C A  EAL  G FIRAK+LLRFLGEL N  LV   E GD+LA + A YV+ +                              W AG S L+D LR
Sbjct:   56 RSGYAKDPPEERAVELARMLSA---RRYLDGGADMEDVATLLVEAAGTLSIQTPVYALTTALCVASAKSPKRSGSREREGXXXXXXXXXXXGNAATARDSMVTDDAA-------DSREDGPSFGRLVVDGCCHAFAEALRKGGFIRAKLLLRFLGELLNCGLVEAQEYGDMLAMLCAGYVKTE-----------------------------AWVAGFSNLMDELR 242

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BLAST of mRNA_P-wetherbeei_contig20774.1.1 vs. uniprot
Match: UPI0003F09D45 (nuclear cap-binding protein subunit 1 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F09D45)

HSP 1 Score: 53.9 bits (128), Expect = 7.910e-5
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 1

Query:  364 SFGRLIVDGVCGALTEALVAGAFIRAKMLLRFLGELANVHLVRYSELGDVLAAMSALYVEGDDPAIKQPCRDLVAYCVAAALPWCGPGLY 633
            +FG   V+ +  AL +AL  G F +A++LLRFL +L N H++  + +  +  A  A+  E D P ++    D   Y V ++LPW G  L+
Sbjct:  101 NFGGEFVENIFRALRDALKVGEFEKARILLRFLTDLVNCHVIDLTSMLVMYEAFVAVTSEDDIPQVRS---DWYMYAVMSSLPWIGRELH 187

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig20774.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig20774.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A836C9J1_9STRA	6.380e-22	32.88	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D8LFZ4_ECTSI	2.870e-17	38.05	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
UPI0003F09D45	7.910e-5	34.44	nuclear cap-binding protein subunit 1 n=1 Tax=Sacc...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig20774	contig	P-wetherbeei_contig20774:258..1191 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2880.D8LFZ4
Preferred name	NCBP1
PFAMs	MIF4G,MIF4G_like,MIF4G_like_2
Model size	678
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12882,ko:K13288
KEGG Pathway	ko03008,ko03013,ko03015,ko03040,map03008,map03013,map03015,map03040
KEGG Module	M00399
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000184,GO:0000243,GO:0000245,GO:0000339,GO:0000340,GO:0000375,GO:0000377,GO:0000394,GO:0000398,GO:0000956,GO:0001101,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0005829,GO:0005844,GO:0005845,GO:0005846,GO:0006139,GO:0006351,GO:0006353,GO:0006354,GO:0006366,GO:0006368,GO:0006369,GO:0006370,GO:0006379,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009314,GO:0009416,GO:0009452,GO:0009628,GO:0009648,GO:0009719,GO:0009725,GO:0009737,GO:0009791,GO:0009889,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010228,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016246,GO:0016441,GO:0016458,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030307,GO:0030422,GO:0031047,GO:0031050,GO:0031053,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031440,GO:0031442,GO:0031503,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033036,GO:0033120,GO:0033993,GO:0034248,GO:0034470,GO:0034518,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035194,GO:0035195,GO:0035196,GO:0036260,GO:0040008,GO:0040029,GO:0042221,GO:0042795,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043331,GO:0043484,GO:0043900,GO:0043901,GO:0043903,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045069,GO:0045071,GO:0045184,GO:0045927,GO:0045935,GO:0046483,GO:0046700,GO:0046907,GO:0048024,GO:0048026,GO:0048518,GO:0048519,GO:0048522,GO:0048525,GO:0048571,GO:0048573,GO:0048574,GO:0048608,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050684,GO:0050685,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051028,GO:0051098,GO:0051099,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070918,GO:0071166,GO:0071310,GO:0071359,GO:0071363,GO:0071407,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097305,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1903311,GO:1903313,GO:1903900,GO:1903901,GO:1905214,GO:1905216,GO:1990904,GO:2000112
Exons	2
Evalue	4.71e-18
EggNOG OGs	KOG1104@1\|root,KOG1104@2759\|Eukaryota
Description	primary miRNA processing
Cds size	678
COG category	O
BRITE	ko00000,ko00001,ko00002,ko01000,ko03009,ko03019,ko03041

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186208.2038753-CDS-P-wetherbeei_contig20774:257..824	1683186208.2038753-CDS-P-wetherbeei_contig20774:257..824	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig20774 258..824 +
1683186208.2157602-CDS-P-wetherbeei_contig20774:1080..1191	1683186208.2157602-CDS-P-wetherbeei_contig20774:1080..1191	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig20774 1081..1191 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig20774.1.1	prot_P-wetherbeei_contig20774.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig20774 258..1191 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig20774:258..1191+
coding sequence from alignment at P-wetherbeei_contig20774:258..1191+

protein sequence of mRNA_P-wetherbeei_contig20774.1.1

>prot_P-wetherbeei_contig20774.1.1 ID=prot_P-wetherbeei_contig20774.1.1|Name=mRNA_P-wetherbeei_contig20774.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp
RNGWAEQESKPLAVNAKQFVAAMTDQTVLNDARQREGLAELLVSAASSLS
MQTPVYALIAALLSQPAAAAEGPVAAAAASGDAAAASGGVAEGKGAAANG
GGSARDGGRGGGGGDDAEPAPSFGRLIVDGVCGALTEALVAGAFIRAKML
LRFLGELANVHLVRYSELGDVLAAMSALYVEGDDPAIKQPCRDLVAYCVA
AALPWCGPGLYRHWPAGLSRLVDALR

mRNA from alignment at P-wetherbeei_contig20774:258..1191+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig20774.1.1 ID=mRNA_P-wetherbeei_contig20774.1.1|Name=mRNA_P-wetherbeei_contig20774.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=934bp|location=Sequence derived from alignment at P-wetherbeei_contig20774:258..1191+ (Phaeothamnion wetherbeei SAG_119_79)
CGTAACGGCTGGGCCGAGCAGGAATCGAAGCCGCTGGCGGTGAACGCCAA
GCAGTTCGTTGCGGCCATGACTGACCAGACGGTACTCAACGACGCGCGCC
AGCGGGAAGGGTTGGCCGAGCTGCTCGTGTCGGCGGCCAGCAGTCTCAGC
ATGCAGACGCCCGTCTACGCCCTCATCGCCGCCCTCCTCTCCCAGCCCGC
CGCTGCCGCCGAAGGCCCCGTGGCAGCGGCGGCGGCCAGCGGCGACGCCG
CCGCGGCGTCCGGCGGCGTGGCGGAAGGGAAGGGCGCCGCGGCGAACGGC
GGTGGCAGCGCCCGCGACGGTGGCCGCGGCGGCGGCGGCGGCGACGATGC
GGAGCCAGCGCCATCCTTTGGGCGGCTGATTGTGGACGGCGTCTGCGGCG
CTCTTACGGAGGCGCTGGTGGCGGGGGCGTTTATCCGGGCTAAGATGCTG
CTGCGCTTCCTGGGGGAGCTGGCCAACGTGCACCTGGTGCGGTATTCGGA
GCTGGGCGACGTGCTGGCGGCAATGTCGGCGCTGTACGTCGAGGGCGACG
ACCCCGCCATCAAGCAGGTGCGCTCGTGCTGCAATTGTTGAGGGAAGAAA
GTGAAAAGCATGGCGCAGCGGAAGAATAGAACTGGAAACGGGTAGGAATT
GATGACCTGTGGGCGGGTATTGCCGTTGTTTGATGCATATACTTCTCTGC
CATAAGTAGAGCGCTCTAGTGGGCTTAGTCTCTGCGCTTTCTGCACCTGA
TTAGGCAAACTTTACCCATCCGTGTGTTTTTAATTGTGCGCCGTTTCTCT
GAAAACCGGAAATCTACGGACAGCCGTGCCGCGACCTGGTGGCGTACTGC
GTCGCGGCAGCTCTGCCGTGGTGCGGGCCGGGCCTCTACCGACACTGGCC
CGCCGGCCTCAGCCGCCTCGTCGACGCCCTGCGC

Coding sequence (CDS) from alignment at P-wetherbeei_contig20774:258..1191+

>mRNA_P-wetherbeei_contig20774.1.1 ID=mRNA_P-wetherbeei_contig20774.1.1|Name=mRNA_P-wetherbeei_contig20774.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig20774:258..1191+ (Phaeothamnion wetherbeei SAG_119_79)
CGTAACGGCTGGGCCGAGCAGGAATCGAAGCCGCTGGCGGTGAACGCCAA
GCAGTTCGTTGCGGCCATGACTGACCAGACGGTACTCAACGACGCGCGCC
AGCGGGAAGGGTTGGCCGAGCTGCTCGTGTCGGCGGCCAGCAGTCTCAGC
ATGCAGACGCCCGTCTACGCCCTCATCGCCGCCCTCCTCTCCCAGCCCGC
CGCTGCCGCCGAAGGCCCCGTGGCAGCGGCGGCGGCCAGCGGCGACGCCG
CCGCGGCGTCCGGCGGCGTGGCGGAAGGGAAGGGCGCCGCGGCGAACGGC
GGTGGCAGCGCCCGCGACGGTGGCCGCGGCGGCGGCGGCGGCGACGATGC
GGAGCCAGCGCCATCCTTTGGGCGGCTGATTGTGGACGGCGTCTGCGGCG
CTCTTACGGAGGCGCTGGTGGCGGGGGCGTTTATCCGGGCTAAGATGCTG
CTGCGCTTCCTGGGGGAGCTGGCCAACGTGCACCTGGTGCGGTATTCGGA
GCTGGGCGACGTGCTGGCGGCAATGTCGGCGCTGTACGTCGAGGGCGACG
ACCCCGCCATCAAGCAGCCGTGCCGCGACCTGGTGGCGTACTGCGTCGCG
GCAGCTCTGCCGTGGTGCGGGCCGGGCCTCTACCGACACTGGCCCGCCGG
CCTCAGCCGCCTCGTCGACGCCCTGCGC