mRNA_P-wetherbeei_contig20761.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20761.2.1
Unique NamemRNA_P-wetherbeei_contig20761.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20761.2.1 vs. uniprot
Match: D7FXC7_ECTSI (Similar to WD repeat domain 36 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC7_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 1.900e-73
Identity = 137/260 (52.69%), Postives = 168/260 (64.62%), Query Frame = 1
Query:    7 LLAAACDDLTVRIYDTTARRLVRRLRGHTGAIADLCFTADGRRLATAAADRSLRVWDLPTGRCVDWLSFRSAPAAVATSPTGEFLVTAHVGRVGLSVWADRSFFQPVFLDAEPTAPALMDDPAPLSEAPXXXXXXXXXXXXXXXXXXXXVAVVRGEPEGDRPAIRGARAAAVVAGDRKHDMAIVDDPTVADGSSGKDGGL--ITLSTLPRAYWANLFNLELVKARNRPVAPPKKPQSAPFFLPTMHRGVEPVFAAPSEPE 780
            L+A ACDD+ VR+YD   R+LVRRL GHT  + D+CFT D RRL T++ D ++R+WDLPTGR VDW+SF+ A   V  SPTGEF+ T+H GRVGLSVWAD+SFFQPV+LD  PT P  MD+PAPL E                         + GE   D+ A+RGARA+  + GDR        D   AD    + GG   ITLS+LPR YW  LFNLE+VKARNRP+ PPKKP++APFFL T+H+G E    APS PE
Sbjct:  634 LVALACDDMVVRLYDLATRKLVRRLEGHTNHLTDMCFTPDARRLVTSSMDHTVRIWDLPTGRTVDWMSFKKAVTGVTVSPTGEFMCTSHHGRVGLSVWADQSFFQPVYLDKIPTVPFKMDEPAPLVE----------DSTALEGGPGQSTTALHGEYRQDKRALRGARAS--LGGDRGEGWQAEAD---ADPEGAEAGGTKAITLSSLPRGYWTTLFNLEVVKARNRPIEPPKKPEAAPFFLTTVHKGGE---VAPSFPE 875          
BLAST of mRNA_P-wetherbeei_contig20761.2.1 vs. uniprot
Match: A0A662WPT0_9STRA (Utp21 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WPT0_9STRA)

HSP 1 Score: 209 bits (532), Expect = 1.430e-60
Identity = 115/276 (41.67%), Postives = 152/276 (55.07%), Query Frame = 1
Query:    7 LLAAACDDLTVRIYDTTARRLVRRLRGHTGAIADLCFTADGRRLATAAADRSLRVWDLPTGRCVDWLSFRSAPAAVATSPTGEFLVTAHVGRVGLSVWADRSFFQPVFLDAEPTAPALMDDPAPLSEAPXXXXXXXXXXXXXXXXXXXXVAVVRGEPEGDRPAIRGARAAAVVAGDRKHDMAIVDDPTVADGSSGKDGGLITLSTLPRAYWANLFNLELVKARNRPVAPPKKPQSAPFFLPTMHRG-VEPVFAAPSEPEEKSNDVSADAEAGKVAA 831
            LL  ACDD  +R++D T R+LVRR  GH   + D+ F+AD R L ++AAD SLRVWD+PTG+CVDWL F+     +A SPTGEFL T HVG VG+ +WA+R+FF  VFLD+EP+ P +MD P PL+E                           G     + ++ G    A   G+ +            +G+   D  LITLST PRA W +LFNLEL+K RN+P+ PPK P+ APFFL T  +  V P F    +  E+      D E  +  A
Sbjct:   45 LLCVACDDQVLRLFDVTTRKLVRRFAGHAHRVTDMTFSADARWLFSSAADASLRVWDIPTGKCVDWLRFQKPVTGLAVSPTGEFLATTHVGHVGIFLWANRTFFMDVFLDSEPSEPVVMDMPVPLNEVDNDDHLGF------------------GTERNPQLSVAGVDEEAKEEGETEE---------TEEGAEPLDTSLITLSTAPRALWQSLFNLELIKKRNKPIEPPKAPEQAPFFLQTARKDEVHPTFVPIDKQAEEVAKTKKDDEEDEAMA 293          
BLAST of mRNA_P-wetherbeei_contig20761.2.1 vs. uniprot
Match: A0A5D6XTH8_9STRA (Utp21 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTH8_9STRA)

HSP 1 Score: 218 bits (554), Expect = 2.020e-60
Identity = 125/272 (45.96%), Postives = 158/272 (58.09%), Query Frame = 1
Query:    7 LLAAACDDLTVRIYDTTARRLVRRLRGHTGAIADLCFTADGRRLATAAADRSLRVWDLPTGRCVDWLSFRSAPAAVATSPTGEFLVTAHVGRVGLSVWADRSFFQPVFLDAEPTAPALMDDPAPLSEAPXXXXXXXXXXXXXXXXXXXXVAVVRGEPEGDRPAIRGARAAAVVAGDRKHDMAIVDDPTVADGSSGKDGGLITLSTLPRAYWANLFNLELVKARNRPVAPPKKPQSAPFFLPTMHRG-VEPVFAAPSEPEEKSNDVSADAEAG 819
            LLA ACDD  +R++D + ++LVRR RGH+  + D+ F+AD R L +++AD SLRVWDLPTG+CVDW+ F      +A SPTGEFL T HVG VG+ +WA+R FF  VFLDAEP  P L+D P PL+E                      ++V  G    D  A R A  A   AG R     +  DP    G S     LITLST PRA W +LFNLEL+K RN+P+ PPK P+ APFFLPTM    V+P F   +  EE +   +  A  G
Sbjct:  588 LLAVACDDQVIRVFDVSTKKLVRRFRGHSHRLTDMHFSADARWLFSSSADASLRVWDLPTGKCVDWVRFHKPVTGLAVSPTGEFLATTHVGHVGIYLWANRGFFMDVFLDAEPQQPTLIDMPVPLNEV------DNADELGFGSEKNPQLSVDGGAD--DDAARRAAVTAVKAAGVR-----VSTDPVAPLGDS-----LITLSTAPRALWHSLFNLELIKKRNKPIEPPKAPEKAPFFLPTMRTDDVKPTFVPVAAKEESATSKTTTAMDG 841          
BLAST of mRNA_P-wetherbeei_contig20761.2.1 vs. uniprot
Match: A0A6H5JTQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ6_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 7.100e-60
Identity = 129/274 (47.08%), Postives = 163/274 (59.49%), Query Frame = 1
Query:    7 LLAAACDDLTVRIYDTTARRLVRRLRGHTGAIADLCFTADGRRLATAAADRSLRVWDLPTGRCVDWLSFRSAPAAVATSPTGEFLVTAHVGRVGLSVWADRSFFQPVFLDAEPTAPALMDDPAPLSEAPXXXXXXXXXXXXXXXXXXXXVAVVRGEPEGDRPAIRGARAAAVVAGDRKHDMAIVDDPTVADGSSGKDGGL--ITLSTLPRAYWANLFNLELVKARNRPVAPPKKPQSAPFFLPTMHRGVEPVFAAPSEPEEKSNDVSADAEAGK 822
            L+A ACDD+ VR+YD   R+LVRRL GHT  + D+CFT D RRL T++ D +       +   +D   F+     V  SPTGEF+ T+H GRVGLSVWAD+SFFQPV+LD  PT P  MD+PAPL E                      +  + GE   D+ A+RGARA+  + G+R        D   AD    + GG   ITLS+LPR YWA LFNLE+VKARNRP+ PPKKP++APFFL T+H+G E    APS PE     ++A A  GK
Sbjct:  124 LVALACDDMVVRLYDLATRKLVRRLEGHTNHLTDMCFTPDARRLVTSSMDHTNMGSPHRSNGGLD--VFQEGRHRVTVSPTGEFMCTSHHGRVGLSVWADQSFFQPVYLDKIPTVPFKMDEPAPLVE----------DSTALEGGSGQSITALHGEYRQDKRALRGARAS--LGGERGEGWQAEAD---ADPEGAEAGGTKAITLSSLPRGYWATLFNLEVVKARNRPIEPPKKPEAAPFFLTTVHKGGE---VAPSFPE--MGTLAAAAAVGK 375          
BLAST of mRNA_P-wetherbeei_contig20761.2.1 vs. uniprot
Match: K3W5I7_GLOUD (Utp21 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5I7_GLOUD)

HSP 1 Score: 210 bits (534), Expect = 9.870e-58
Identity = 117/269 (43.49%), Postives = 156/269 (57.99%), Query Frame = 1
Query:    7 LLAAACDDLTVRIYDTTARRLVRRLRGHTGAIADLCFTADGRRLATAAADRSLRVWDLPTGRCVDWLSFRSAPAAVATSPTGEFLVTAHVGRVGLSVWADRSFFQPVFLDAEPTAPALMDDPAPLSEAPXXXXXXXXXXXXXXXXXXXXVAVVRGEPEGDRPAIRGARAAAVVAGDRKHDMAIVDDPTVADGSSGKDGG--LITLSTLPRAYWANLFNLELVKARNRPVAPPKKPQSAPFFLPTMHRG-VEPVFAAPSEPEEKSNDVSA 804
            LL+ ACDD  +R+YD + R+LVRR  GH+  I D+ F+ D R L +++AD SLRVWDLPTG+CVDW+ F      +A SPTGEF+ T HVG VG+ +WA+R FF  VFLD EP AP LMD P PL+E                       A+  G  +  + ++ G         D +   +  D+P+  +    +  G  LITLS  PRA W +LFNLEL+K RN+P+ PPK P+ APFFLPTM +  V+P F     P EK  + +A
Sbjct:  590 LLSVACDDQVIRVYDISTRKLVRRFHGHSHRITDMHFSGDARWLYSSSADASLRVWDLPTGKCVDWIKFHKPVTGLAVSPTGEFIATTHVGYVGIYLWANRGFFMDVFLDTEPQAPTLMDMPVPLNEVDNAD------------------ALGFGSEKNPQLSVDGGNH------DEQVQPSTKDEPSTDETGPVEPLGHSLITLSAAPRALWQSLFNLELIKKRNKPIEPPKAPEQAPFFLPTMRKDDVKPTFV----PVEKKPESAA 830          
BLAST of mRNA_P-wetherbeei_contig20761.2.1 vs. uniprot
Match: A0A2P4XFW9_9STRA (Utp21 domain-containing protein n=31 Tax=Phytophthora TaxID=4783 RepID=A0A2P4XFW9_9STRA)

HSP 1 Score: 209 bits (533), Expect = 1.140e-57
Identity = 116/261 (44.44%), Postives = 149/261 (57.09%), Query Frame = 1
Query:    7 LLAAACDDLTVRIYDTTARRLVRRLRGHTGAIADLCFTADGRRLATAAADRSLRVWDLPTGRCVDWLSFRSAPAAVATSPTGEFLVTAHVGRVGLSVWADRSFFQPVFLDAEPTAPALMDDPAPLSEAPXXXXXXXXXXXXXXXXXXXXVAVVRGEPEGDRPAIRGARAAAVVAGDRKHDMAIVDDPTVADGSSGKDGGLITLSTLPRAYWANLFNLELVKARNRPVAPPKKPQSAPFFLPTMHRG-VEPVFAAPSEPEEK 786
            LL  ACDD  +R+YD T  +LVRR  GH+  + D+ F++D R L +++AD SLRVWD+PTG+CVDW+ F+     +A SPTGEFL T HVG VG+ +WA+RSFF  VFLD+EPT P LMD P  L+E                       +V   +PE  +          V  G+              + S   D  LITLST PRA+W +LFNLEL+K RN+P+ PPK P+ APFFL T  +  V P F  P EPE K
Sbjct:  574 LLCVACDDQVLRLYDVTTHKLVRRFAGHSHRVTDMTFSSDARWLFSSSADASLRVWDIPTGKCVDWMRFQKPVTGLAVSPTGEFLATTHVGHVGIFLWANRSFFTEVFLDSEPTEPVLMDMPVALNEVDNSDHLGFGTERNPQLSVS---SVDEQQPEASK----------VEEGE--------------ESSDPLDASLITLSTAPRAFWQSLFNLELIKKRNKPIEPPKAPEQAPFFLQTARKDDVHPTFV-PVEPESK 806          
BLAST of mRNA_P-wetherbeei_contig20761.2.1 vs. uniprot
Match: A0A662WI09_9STRA (Utp21 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WI09_9STRA)

HSP 1 Score: 207 bits (526), Expect = 2.630e-57
Identity = 117/279 (41.94%), Postives = 155/279 (55.56%), Query Frame = 1
Query:    7 LLAAACDDLTVRIYDTTARRLVRRLRGHTGAIADLCFTADGRRLATAAADRSLRVWDLPTGRCVDWLSFRSAPAAVATSPTGEFLVTAHVGRVGLSVWADRSFFQPVFLDAEPTAPALMDDPAPLSEAPXXXXXXXXXXXXXXXXXXXXVAVVRGEPEGDRPAIRGARAAAVVAGDRKHDMAIVDDPT--VADGSSGKDGGLITLSTLPRAYWANLFNLELVKARNRPVAPPKKPQSAPFFLPTMHRG-VEPVFA-----APSEPEEKSNDVSADAEAG 819
            LL  ACDD  +R++D T R+LVRR  GH   + D+ F+AD R L ++AAD SLRVWD+PTG+CVDWL F+     +A SPTGEFL T HVG VG+ +WA+R+FF  VFLD+EP+ P +MD P PL+E                           G     + ++ G             + A  ++ T    +G+   D  LITLST PRA W +LFNLEL+K RN+P+ PPK P+ APFFL T  +  V P F      A    + K +D   +A AG
Sbjct:  376 LLCVACDDQVLRLFDVTTRKLVRRFAGHAHRVTDMTFSADARWLFSSAADASLRVWDIPTGKCVDWLRFQKPVTGLAVSPTGEFLATTHVGHVGIFLWANRTFFMDVFLDSEPSEPVVMDMPVPLNEVDNDDHLGF------------------GTERNPQLSVAGV-----------DEEAKEEEKTEETEEGAEPLDTSLITLSTAPRALWQSLFNLELIKKRNKPIEPPKAPEQAPFFLQTARKDEVHPTFVPIDKKAQEAAKAKKDDEEDEAMAG 625          
BLAST of mRNA_P-wetherbeei_contig20761.2.1 vs. uniprot
Match: M4BPC8_HYAAE (Utp21 domain-containing protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BPC8_HYAAE)

HSP 1 Score: 207 bits (528), Expect = 7.160e-57
Identity = 113/253 (44.66%), Postives = 151/253 (59.68%), Query Frame = 1
Query:    7 LLAAACDDLTVRIYDTTARRLVRRLRGHTGAIADLCFTADGRRLATAAADRSLRVWDLPTGRCVDWLSFRSAPAAVATSPTGEFLVTAHVGRVGLSVWADRSFFQPVFLDAEPTAPALMDDPAPLSEAPXXXXXXXXXXXXXXXXXXXXVAVVRGEPEGDRPAIRGARAAAVVAGDRKHDMAIVDDPTVADGSSGK-DGGLITLSTLPRAYWANLFNLELVKARNRPVAPPKKPQSAPFFLPTMHRG-VEPVF 759
            LL  ACDD  +R++D T R+LVRR  GH+  + D+ F++D R L +++AD SLRVWD+PTG+C+DWL F+     +A SPTGEFL T HVG VG+ +WA+RSFF  ++LD+EPT P LMD P  L+E                         V      D    R  + +A    D     ++VD+  + + SSG  D  LITLST PRA+W +LFNLEL+K RN+P+ PPK P+ APFFL T  +  V P F
Sbjct:  650 LLCVACDDQILRLFDVTTRKLVRRFAGHSHRVTDMTFSSDARWLFSSSADASLRVWDIPTGKCIDWLRFQKPVTGLAVSPTGEFLATTHVGHVGIFLWANRSFFTEIYLDSEPTEPVLMDMPVALNE-------------------------VDNSDHLDFGTERNPQVSAASV-DELRPESVVDE--IDEASSGPLDAPLITLSTAPRAFWQSLFNLELIKKRNKPIEPPKAPEQAPFFLQTARKDDVHPTF 874          
BLAST of mRNA_P-wetherbeei_contig20761.2.1 vs. uniprot
Match: A0A4D9CWM3_9STRA (Utp21 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWM3_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.430e-56
Identity = 117/257 (45.53%), Postives = 149/257 (57.98%), Query Frame = 1
Query:    7 LLAAACDDLTVRIYDTTARRLVRRLRGHTGAIADLCFTADGRRLATAAADRSLRVWDLPTGRCVDWLSFRSAPAAVATSPTGEFLVTAHVGRVGLSVWADRSFFQPVFL--DAEPTAPALMDDPAPLSEAPXXXXXXXXXXXXXXXXXXXXVAVVRGEPEGDRPAIRGARAAAVVAGDRKHDMAIVDDPTVADGSSGKDGGLITLSTLPRAYWANLFNLELVKARNRPVAPPKKPQSAPFFLPTMHRGVEPVFAAPS 771
            LLAAACDD  VR+YD   R+LVRRL GHT  I+D+CF+ DGRRL +A+ D ++RVWDLPTG CVDWL F+     +  S TGE+L T+HV R+GL +WADRSFFQ V L     PT P  +D+P  L+E                      +++  G+  G     R A  A +    +  +   + DP      S K+ GLITL+ LPRA+W  LF LEL+KARN+P  P        FFLPTMH GV P FA P+
Sbjct:  662 LLAAACDDFVVRVYDMMTRKLVRRLAGHTAQISDMCFSRDGRRLVSASVDATVRVWDLPTGACVDWLRFKRPVTGLTLSHTGEYLCTSHVDRLGLYMWADRSFFQTVDLCSSGPPTTPCDLDEPTVLTEI-------------------GELSLENGDDSG-----RKAEDAVLTRVPQASEEEGLSDPLAI---SPKEEGLITLAMLPRAHWQTLFQLELIKARNKPKEPXXXXXXXXFFLPTMHNGVIPTFAPPT 891          
BLAST of mRNA_P-wetherbeei_contig20761.2.1 vs. uniprot
Match: A0A3R7G6Q1_9STRA (Utp21 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G6Q1_9STRA)

HSP 1 Score: 206 bits (525), Expect = 1.570e-56
Identity = 115/270 (42.59%), Postives = 148/270 (54.81%), Query Frame = 1
Query:    7 LLAAACDDLTVRIYDTTARRLVRRLRGHTGAIADLCFTADGRRLATAAADRSLRVWDLPTGRCVDWLSFRSAPAAVATSPTGEFLVTAHVGRVGLSVWADRSFFQPVFLDAEPTAPALMDDPAPLSEAPXXXXXXXXXXXXXXXXXXXXVAVVRGEPEGDRPAIRGARAAAVVAGDRKHDMAIVDDPTVADGSSGKDGGLITLSTLPRAYWANLFNLELVKARNRPVAPPKKPQSAPFFLPTMHRG-VEPVFAAPSEPEEKSNDVSADAE 813
            LL  ACDD  +R++D T  +LVRR  GH+  + D+ F++D R L ++AAD SLRVWD+PTG+CVDWL F+     +A SPTGEFL T HV  VG+ +WA+RS+F  VFLD+EPT P LMD P  L+E                           G      P +  A        D K      +D T  +     D  LITLST PRA+W +LFNLEL+K RN+P+ PPK P+ APFFL T  +  V P F    + +E   D   D E
Sbjct:  596 LLCVACDDQVLRLFDVTTHKLVRRFTGHSHRVTDMTFSSDARWLFSSAADASLRVWDIPTGKCVDWLRFQKPVTGLAVSPTGEFLATTHVSHVGIFLWANRSYFTEVFLDSEPTEPVLMDMPVALNEIDNSDQL--------------------GYGSERNPQLSVANV------DEKRPENSKEDDT-EENLDSLDSSLITLSTAPRAFWQSLFNLELIKKRNKPIEPPKAPEQAPFFLQTARKDDVHPTFVPIEKKDETKKDDKTDKE 838          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20761.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXC7_ECTSI1.900e-7352.69Similar to WD repeat domain 36 n=1 Tax=Ectocarpus ... [more]
A0A662WPT0_9STRA1.430e-6041.67Utp21 domain-containing protein n=1 Tax=Nothophyto... [more]
A0A5D6XTH8_9STRA2.020e-6045.96Utp21 domain-containing protein n=1 Tax=Pythium br... [more]
A0A6H5JTQ6_9PHAE7.100e-6047.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K3W5I7_GLOUD9.870e-5843.49Utp21 domain-containing protein n=1 Tax=Globispora... [more]
A0A2P4XFW9_9STRA1.140e-5744.44Utp21 domain-containing protein n=31 Tax=Phytophth... [more]
A0A662WI09_9STRA2.630e-5741.94Utp21 domain-containing protein (Fragment) n=1 Tax... [more]
M4BPC8_HYAAE7.160e-5744.66Utp21 domain-containing protein n=2 Tax=Hyaloperon... [more]
A0A4D9CWM3_9STRA1.430e-5645.53Utp21 domain-containing protein n=2 Tax=Monodopsid... [more]
A0A3R7G6Q1_9STRA1.570e-5642.59Utp21 domain-containing protein n=3 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20761contigP-wetherbeei_contig20761:61..996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FXC7
Preferred nameWDR36
PFAMsANAPC4_WD40,Utp21,WD40
Model size936
Max annot lvl2759|Eukaryota
KEGG koko:K14554,ko:K16353
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Exons1
Evalue3.11e-74
EggNOG OGsKOG1539@1|root,KOG1539@2759|Eukaryota
DescriptionrRNA processing
Cds size936
COG categoryS
BRITEko00000,ko00001,ko03009,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186207.9889905-CDS-P-wetherbeei_contig20761:60..9961683186207.9889905-CDS-P-wetherbeei_contig20761:60..996Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20761 61..996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20761.2.1prot_P-wetherbeei_contig20761.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20761 61..996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20761.2.1

>prot_P-wetherbeei_contig20761.2.1 ID=prot_P-wetherbeei_contig20761.2.1|Name=mRNA_P-wetherbeei_contig20761.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=312bp
AGLLAAACDDLTVRIYDTTARRLVRRLRGHTGAIADLCFTADGRRLATAA
ADRSLRVWDLPTGRCVDWLSFRSAPAAVATSPTGEFLVTAHVGRVGLSVW
ADRSFFQPVFLDAEPTAPALMDDPAPLSEAPSAAAAEAAAADEAAAEAAA
AVAVVRGEPEGDRPAIRGARAAAVVAGDRKHDMAIVDDPTVADGSSGKDG
GLITLSTLPRAYWANLFNLELVKARNRPVAPPKKPQSAPFFLPTMHRGVE
PVFAAPSEPEEKSNDVSADAEAGKVAAAAKEKEDQETAAAELAAWGGAWS
DDDDGTAGGDDD
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mRNA from alignment at P-wetherbeei_contig20761:61..996-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20761.2.1 ID=mRNA_P-wetherbeei_contig20761.2.1|Name=mRNA_P-wetherbeei_contig20761.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=936bp|location=Sequence derived from alignment at P-wetherbeei_contig20761:61..996- (Phaeothamnion wetherbeei SAG_119_79)
GCAGGTCTGCTGGCGGCGGCGTGCGACGACCTGACGGTGCGCATCTACGA CACGACTGCCCGGCGGCTTGTCCGCCGCCTCCGCGGCCACACCGGAGCCA TCGCGGACCTCTGCTTCACGGCCGACGGCCGCCGCCTCGCGACCGCCGCC GCCGACCGCTCGCTGCGCGTCTGGGACCTGCCGACTGGCCGCTGCGTCGA CTGGCTGTCGTTCCGCTCAGCACCTGCCGCTGTCGCTACGTCGCCGACGG GGGAGTTTCTCGTGACGGCGCACGTCGGCCGCGTCGGCTTATCTGTGTGG GCGGACCGTTCTTTCTTCCAGCCGGTGTTTCTCGACGCCGAACCGACGGC ACCGGCGCTGATGGATGACCCGGCACCGCTGTCGGAGGCCCCATCGGCAG CGGCGGCGGAGGCGGCGGCGGCGGATGAAGCCGCTGCGGAGGCCGCGGCG GCGGTGGCTGTGGTGAGAGGGGAGCCCGAAGGTGACCGCCCGGCGATTCG CGGGGCGCGTGCGGCGGCGGTCGTGGCGGGCGACAGAAAACACGACATGG CGATAGTTGACGACCCTACGGTGGCAGACGGCAGCAGTGGGAAAGACGGC GGACTGATCACGCTGAGCACGCTGCCGCGCGCCTACTGGGCGAACCTCTT CAACCTGGAGCTGGTCAAGGCCCGGAACCGACCAGTAGCGCCGCCAAAAA AGCCGCAGAGCGCACCCTTCTTCCTCCCCACGATGCATCGGGGCGTCGAG CCCGTATTTGCCGCACCGTCGGAGCCGGAGGAGAAATCCAACGACGTGTC GGCGGACGCTGAGGCGGGGAAGGTGGCGGCGGCGGCGAAGGAGAAGGAGG ATCAGGAAACGGCGGCGGCAGAGCTGGCGGCGTGGGGCGGGGCATGGTCG GATGACGATGACGGTACTGCCGGCGGAGACGACGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20761:61..996-

>mRNA_P-wetherbeei_contig20761.2.1 ID=mRNA_P-wetherbeei_contig20761.2.1|Name=mRNA_P-wetherbeei_contig20761.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=936bp|location=Sequence derived from alignment at P-wetherbeei_contig20761:61..996- (Phaeothamnion wetherbeei SAG_119_79)
GCAGGTCTGCTGGCGGCGGCGTGCGACGACCTGACGGTGCGCATCTACGA
CACGACTGCCCGGCGGCTTGTCCGCCGCCTCCGCGGCCACACCGGAGCCA
TCGCGGACCTCTGCTTCACGGCCGACGGCCGCCGCCTCGCGACCGCCGCC
GCCGACCGCTCGCTGCGCGTCTGGGACCTGCCGACTGGCCGCTGCGTCGA
CTGGCTGTCGTTCCGCTCAGCACCTGCCGCTGTCGCTACGTCGCCGACGG
GGGAGTTTCTCGTGACGGCGCACGTCGGCCGCGTCGGCTTATCTGTGTGG
GCGGACCGTTCTTTCTTCCAGCCGGTGTTTCTCGACGCCGAACCGACGGC
ACCGGCGCTGATGGATGACCCGGCACCGCTGTCGGAGGCCCCATCGGCAG
CGGCGGCGGAGGCGGCGGCGGCGGATGAAGCCGCTGCGGAGGCCGCGGCG
GCGGTGGCTGTGGTGAGAGGGGAGCCCGAAGGTGACCGCCCGGCGATTCG
CGGGGCGCGTGCGGCGGCGGTCGTGGCGGGCGACAGAAAACACGACATGG
CGATAGTTGACGACCCTACGGTGGCAGACGGCAGCAGTGGGAAAGACGGC
GGACTGATCACGCTGAGCACGCTGCCGCGCGCCTACTGGGCGAACCTCTT
CAACCTGGAGCTGGTCAAGGCCCGGAACCGACCAGTAGCGCCGCCAAAAA
AGCCGCAGAGCGCACCCTTCTTCCTCCCCACGATGCATCGGGGCGTCGAG
CCCGTATTTGCCGCACCGTCGGAGCCGGAGGAGAAATCCAACGACGTGTC
GGCGGACGCTGAGGCGGGGAAGGTGGCGGCGGCGGCGAAGGAGAAGGAGG
ATCAGGAAACGGCGGCGGCAGAGCTGGCGGCGTGGGGCGGGGCATGGTCG
GATGACGATGACGGTACTGCCGGCGGAGACGACGAT
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