mRNA_P-wetherbeei_contig20751.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20751.1.1
Unique NamemRNA_P-wetherbeei_contig20751.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20751.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20751contigP-wetherbeei_contig20751:453..877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size272
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186207.6844523-CDS-P-wetherbeei_contig20751:452..6801683186207.6844523-CDS-P-wetherbeei_contig20751:452..680Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20751 453..680 -
1683186207.6939015-CDS-P-wetherbeei_contig20751:834..8641683186207.6939015-CDS-P-wetherbeei_contig20751:834..864Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20751 835..864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186207.7055414-UTR-P-wetherbeei_contig20751:864..8771683186207.7055414-UTR-P-wetherbeei_contig20751:864..877Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20751 865..877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20751.1.1prot_P-wetherbeei_contig20751.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20751 453..864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20751.1.1

>prot_P-wetherbeei_contig20751.1.1 ID=prot_P-wetherbeei_contig20751.1.1|Name=mRNA_P-wetherbeei_contig20751.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
MIFTSGDGAACCLSASHHVFVFRILPHILAYRLGRWRRRRRLELRLHNFT
LPGLGRAGVTNRLWAARWGCVHRPGQNAASGPLPVA
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mRNA from alignment at P-wetherbeei_contig20751:453..877-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20751.1.1 ID=mRNA_P-wetherbeei_contig20751.1.1|Name=mRNA_P-wetherbeei_contig20751.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=425bp|location=Sequence derived from alignment at P-wetherbeei_contig20751:453..877- (Phaeothamnion wetherbeei SAG_119_79)
CGATGGGGCCGACATGATCTTCACGTCCGGCGACGGCGCCGCGGTGAGTC
GACGACTTAAAACATCCGAGTGCAACTTAGGGTTAGGGTTAGGGTTTCGA
GGTTTGTTTCCTCCGGTTGATTGACGTGGTGCCTTTCGTGAAGCGCACCC
ACCTTTTCCCCCGACCTTCCTTTCTTCTTCCGCTCTGACGGCTGCAGTGC
TGTTTGTCAGCCTCACACCACGTTTTCGTCTTCCGCATCTTGCCGCATAT
CCTCGCCTACCGGTTGGGGCGGTGGCGGCGGCGGCGGCGGTTGGAGCTGC
GGCTGCATAATTTCACCTTGCCCGGCCTTGGTCGGGCAGGGGTCACAAAC
CGATTATGGGCAGCGCGTTGGGGATGTGTGCACCGACCCGGCCAAAACGC
TGCCTCAGGGCCGCTACCGGTCGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20751:453..877-

>mRNA_P-wetherbeei_contig20751.1.1 ID=mRNA_P-wetherbeei_contig20751.1.1|Name=mRNA_P-wetherbeei_contig20751.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig20751:453..877- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCTTCACGTCCGGCGACGGCGCCGCGTGCTGTTTGTCAGCCTCACA
CCACGTTTTCGTCTTCCGCATCTTGCCGCATATCCTCGCCTACCGGTTGG
GGCGGTGGCGGCGGCGGCGGCGGTTGGAGCTGCGGCTGCATAATTTCACC
TTGCCCGGCCTTGGTCGGGCAGGGGTCACAAACCGATTATGGGCAGCGCG
TTGGGGATGTGTGCACCGACCCGGCCAAAACGCTGCCTCAGGGCCGCTAC
CGGTCGCA
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