mRNA_P-wetherbeei_contig20700.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20700.1.1
Unique NamemRNA_P-wetherbeei_contig20700.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig20700.1.1 vs. uniprot
Match: A0A482UY99_9ARCH (Band_7_C domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UY99_9ARCH)

HSP 1 Score: 63.2 bits (152), Expect = 2.790e-12
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 LQVARDYIEMFGTMGAQSNTMLFSDRPGDVNALLAQAAAVVGSAG 135
            + VARDYI M+G MG QSNTM+FSDRP D++ALLAQAAAV+   G
Sbjct:    1 MAVARDYISMYGEMGKQSNTMIFSDRPADLHALLAQAAAVIKGGG 45
[Close]
BLAST of mRNA_P-wetherbeei_contig20700.1.1 vs. uniprot
Match: D8LIQ8_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ8_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.580e-11
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 LQVARDYIEMFGTMGAQSNTMLFSDRPGDVNALLAQAAAVVGSAG 135
            LQ+A+ YI+M+G MG  SNTMLFSDRP DVNAL+AQA+AV+ SAG
Sbjct:  359 LQIAKQYIDMYGEMGKSSNTMLFSDRPADVNALIAQASAVLSSAG 403
[Close]
BLAST of mRNA_P-wetherbeei_contig20700.1.1 vs. uniprot
Match: A0A6H5K1H4_9PHAE (PHB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H4_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.580e-11
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 LQVARDYIEMFGTMGAQSNTMLFSDRPGDVNALLAQAAAVVGSAG 135
            LQ+A+ YI+M+G MG  SNTMLFSDRP DVNAL+AQA+AV+ SAG
Sbjct:  361 LQIAKQYIDMYGEMGKSSNTMLFSDRPADVNALIAQASAVLSSAG 405
[Close]
BLAST of mRNA_P-wetherbeei_contig20700.1.1 vs. uniprot
Match: A0A4D9CZF1_9STRA (PHB domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZF1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.460e-11
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 LQVARDYIEMFGTMGAQSNTMLFSDRPGDVNALLAQAAAVVGSAG 135
            LQVA++YI M+G MG+QS+TMLFSDRPGDVNAL AQAA  + +AG
Sbjct:  294 LQVAKEYISMYGLMGSQSHTMLFSDRPGDVNALFAQAALALQAAG 338
[Close]
BLAST of mRNA_P-wetherbeei_contig20700.1.1 vs. uniprot
Match: A0A7S2NV15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NV15_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.710e-9
Identity = 27/43 (62.79%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 LQVARDYIEMFGTMGAQSNTMLFSDRPGDVNALLAQAAAVVGS 129
            L +A+DY++MFG MG++SNTM+F+DRP DVNALL+QAA  + S
Sbjct:  315 LALAKDYVQMFGEMGSKSNTMMFNDRPADVNALLSQAALAISS 357
[Close]
BLAST of mRNA_P-wetherbeei_contig20700.1.1 vs. uniprot
Match: A0A812RC28_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RC28_SYMMI)

HSP 1 Score: 60.1 bits (144), Expect = 2.190e-9
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 LQVARDYIEMFGTMGAQSNTMLFSDRPGDVNALLAQAAAVVGS 129
            L +AR+YI M+  +G +SNTM+FSDRP DVNAL+AQAAAV+G+
Sbjct:  265 LNIAREYIAMYSDIGQKSNTMIFSDRPADVNALMAQAAAVLGA 307
[Close]
BLAST of mRNA_P-wetherbeei_contig20700.1.1 vs. uniprot
Match: A0A7S2BBQ4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BBQ4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.230e-9
Identity = 26/43 (60.47%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 LQVARDYIEMFGTMGAQSNTMLFSDRPGDVNALLAQAAAVVGS 129
            L +A+DY++M+G +G+ SNTMLF ++PGD+NALLAQA+AV+G+
Sbjct:  295 LSLAQDYVKMYGEIGSTSNTMLFQEKPGDLNALLAQASAVLGA 337
[Close]
BLAST of mRNA_P-wetherbeei_contig20700.1.1 vs. uniprot
Match: A0A7S2YNQ3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YNQ3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.520e-8
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 LQVARDYIEMFGTMGAQSNTMLFSDRPGDVNALLAQAAAVV 123
            L +A DY++M+G MG QSNT+LF+DRP DVNAL+AQA A +
Sbjct:  108 LALAHDYVKMYGQMGQQSNTILFNDRPADVNALMAQAMATL 148
[Close]
BLAST of mRNA_P-wetherbeei_contig20700.1.1 vs. uniprot
Match: A0A7S0G971_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G971_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.890e-8
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 LQVARDYIEMFGTMGAQSNTMLFSDRPGDVNALLAQAAAVV 123
            L +ARDY+ M+G MG++SNTM+F+DRP D+NALLAQA+  +
Sbjct:  320 LALARDYVTMYGEMGSKSNTMMFNDRPADLNALLAQASLAI 360
[Close]
BLAST of mRNA_P-wetherbeei_contig20700.1.1 vs. uniprot
Match: A0A1Z5JQI7_FISSO (PHB domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQI7_FISSO)

HSP 1 Score: 56.6 bits (135), Expect = 3.920e-8
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 LQVARDYIEMFGTMGAQSNTMLFSDRPGDVNALLAQAA 114
            L +ARDY+ M+G MG QSNT+LF+DRP D+N+LLAQAA
Sbjct:  303 LALARDYVAMYGEMGKQSNTILFNDRPADMNSLLAQAA 340
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20700.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A482UY99_9ARCH2.790e-1268.89Band_7_C domain-containing protein n=1 Tax=archaeo... [more]
D8LIQ8_ECTSI1.580e-1171.11PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K1H4_9PHAE1.580e-1171.11PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A4D9CZF1_9STRA5.460e-1171.11PHB domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S2NV15_9STRA1.710e-962.79Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A812RC28_SYMMI2.190e-965.12Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A7S2BBQ4_9STRA4.230e-960.47Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2YNQ3_9STRA1.520e-863.41Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S0G971_9STRA2.890e-860.98Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1Z5JQI7_FISSO3.920e-868.42PHB domain-containing protein n=2 Tax=Fistulifera ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20700contigP-wetherbeei_contig20700:681..815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LIQ8
PFAMsBand_7,Band_7_C
Model size135
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.88e-08
EggNOG OGsCOG0330@1|root,KOG2620@2759|Eukaryota
Descriptionstress-induced mitochondrial fusion
Cds size108
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186207.0046644-CDS-P-wetherbeei_contig20700:680..7881683186207.0046644-CDS-P-wetherbeei_contig20700:680..788Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20700 681..788 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186207.0139842-UTR-P-wetherbeei_contig20700:788..8151683186207.0139842-UTR-P-wetherbeei_contig20700:788..815Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20700 789..815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20700.1.1prot_P-wetherbeei_contig20700.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20700 681..788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20700.1.1

>prot_P-wetherbeei_contig20700.1.1 ID=prot_P-wetherbeei_contig20700.1.1|Name=mRNA_P-wetherbeei_contig20700.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=36bp
MFGTMGAQSNTMLFSDRPGDVNALLAQAAAVVGSAG
back to top

mRNA from alignment at P-wetherbeei_contig20700:681..815-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20700.1.1 ID=mRNA_P-wetherbeei_contig20700.1.1|Name=mRNA_P-wetherbeei_contig20700.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=135bp|location=Sequence derived from alignment at P-wetherbeei_contig20700:681..815- (Phaeothamnion wetherbeei SAG_119_79)
CTACAGGTCGCCCGCGACTACATCGAAATGTTCGGAACCATGGGCGCGCA
GTCGAACACCATGCTCTTCTCTGACCGCCCGGGGGACGTCAACGCGCTGC
TGGCACAGGCGGCTGCCGTCGTCGGGTCGGCCGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20700:681..815-

>mRNA_P-wetherbeei_contig20700.1.1 ID=mRNA_P-wetherbeei_contig20700.1.1|Name=mRNA_P-wetherbeei_contig20700.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=108bp|location=Sequence derived from alignment at P-wetherbeei_contig20700:681..815- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGGAACCATGGGCGCGCAGTCGAACACCATGCTCTTCTCTGACCG
CCCGGGGGACGTCAACGCGCTGCTGGCACAGGCGGCTGCCGTCGTCGGGT
CGGCCGGC
back to top