mRNA_P-wetherbeei_contig2070.3.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2070.3.3
Unique NamemRNA_P-wetherbeei_contig2070.3.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2070.3.3 vs. uniprot
Match: D7FY25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY25_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 5.930e-80
Identity = 160/341 (46.92%), Postives = 198/341 (58.06%), Query Frame = 2
Query:  185 KAKGSAIHIWNWSGTQPRFRCHAAERIGPVATTSDGALCAVGGITGKVYLWELSTGTLLCVWDGHYKAVRALCFSGDESRLYSGGEDAMLSAWDVLTL---DGG----GGRGSGQSVSPL-WTASDHSLPVTAVHAPSVGARVYSASLDRTGKVWDAVAGRLLFSFAVGTSLAAVATDPAQSFVFLGADDGRIFQFDMDTSAAAATDVLVRHIDAGIV------DS-----------PPA-------------LQELSCDGKPVTSLASTVAGDLLLSGHSDGSVRVWHVASRQCVRKLGPL---KGARGGRRAAPERHNSVAVSWFQLSGGRGVGKDGMR 1084
            + KG+A+H W W   QPR +CHA E++GP+A T DG LCA GG++G+VYLWE+S+GTLL  WD HYKAV AL FS D   LYSGGEDAM+S+W++L     DGG    GG G G+S  P  WT+S+HSLPVT +HA   G RVYS SLDRT K WD+ +GRLL S      L AVA DPA++F+F G   G IFQ D+  +A AAT        +G +      DS           P A             LQEL    K VTSL+ T    +L+S   DG+VR WHVASRQCV+K   +   KG  GG  +AP      A+   Q   GRG+G    R
Sbjct:   52 QVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAVTGDGWLCAGGGVSGRVYLWEVSSGTLLRAWDAHYKAVSALAFSPDGCFLYSGGEDAMVSSWNMLAAVDPDGGEAFKGGGGGGKSSLPATWTSSEHSLPVTCLHAAKAGGRVYSCSLDRTAKAWDSCSGRLLLSVTCPAFLKAVAADPAEAFLFAGGGGGTIFQLDISATAVAATASNAAVASSGGLQIEEEADSEEHDPSWGLRLPEASFGGGGSGADGGGLQELHGHEKAVTSLSVTADSSVLVSSSEDGTVRSWHVASRQCVQKTEGVVGGKGETGG--SAPTLGVRAALEAIQ---GRGLGMQSSR 387          
BLAST of mRNA_P-wetherbeei_contig2070.3.3 vs. uniprot
Match: A0A067CCG4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CCG4_SAPPC)

HSP 1 Score: 211 bits (537), Expect = 2.060e-59
Identity = 121/283 (42.76%), Postives = 163/283 (57.60%), Query Frame = 2
Query:  161 HSLLCSPPKAKGSAIHIWNWSGTQPRFRCHAAERIGPVATTSDGALCAVGGITGKVYLWELSTGTLLCVWDGHYKAVRALCFSGDESRLYSGGEDAMLSAWDVLTLDGGGGRGS--GQSVSPLWTASDHSLPVTAVHAPSVGARVYSASLDRTGKVWDAVAGRLLFSFAVGTSLAAVATDPAQSFVFLGADDGRIFQFDMDTSAAAATDVLVRHIDAGIVDSPPALQE-LSCDG-----KPVTSLASTVAGDLLLSGHSDGSVRVWHVASRQCVRKLGPLKGA 985
            H +   P K    A+H+  W    P  +CH  E +GP+  T DG  C  GG +GK+Y+W ++TG LL VWDGHYKAV AL  + D++ L SGGEDA++  W +L +      GS   Q +SPL T +DH LP+T VH    G R+++ASLDRT KVWD V GR L S    + +  V  D  +  +FLGA DGRI+  D+  +A AAT    R + A   D  P  QE LS +G      PVT+L  ++ G  ++SG  DG VRVW   SRQ +R +  +KG+
Sbjct:   48 HLITIQPGKL---ALHMHMWGKDVPTLKCHVTEPMGPLIATRDGNFCIAGGASGKIYVWCVATGALLHVWDGHYKAVSALALTPDDAFLVSGGEDAVVHVWRLLDILDASHEGSTLNQGLSPLHTWTDHVLPITHVHC-GFGGRIFTASLDRTAKVWDLVHGRALVSVTCPSYVNVVVPDAMEHRLFLGAGDGRIYVVDLHAAATAATAAHARVVLAA--DGAPFSQETLSAEGFVGHEHPVTTLVVSLCGRFVISGDDDGVVRVWDSVSRQALRTMNFVKGS 324          
BLAST of mRNA_P-wetherbeei_contig2070.3.3 vs. uniprot
Match: A0A1V9ZLK9_9STRA (WD domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLK9_9STRA)

HSP 1 Score: 207 bits (527), Expect = 5.700e-58
Identity = 118/284 (41.55%), Postives = 163/284 (57.39%), Query Frame = 2
Query:  161 HSLLCSPPKAKGSAIHIWNWSGTQPRFRCHAAERIGPVATTSDGALCAVGGITGKVYLWELSTGTLLCVWDGHYKAVRALCFSGDESRLYSGGEDAMLSAWDVLTL--DGGGGRGSGQSVSPLWTASDHSLPVTAVHAPSVGARVYSASLDRTGKVWDAVAGRLLFSFAVGTSLAAVATDPAQSFVFLGADDGRIFQFDMDTSAAAATDVLVR--HIDAGIVDSPPALQELSCDG-----KPVTSLASTVAGDLLLSGHSDGSVRVWHVASRQCVRKLGPLKGA 985
            H +   P K    A+H+  W    P  +CH  E +GP+ TT DG  C  GG +GK+Y+W +++G LL VWDGHYKAV AL  + D++ L SGGEDA++  W +L +     G     Q ++PL T +DH LP+T VH    G RV++ASLDRT K+WD  AG  L S    + L     D  +  +FLGA DGRI+  D+  +A AAT    R  H  AG   +P +L+ LS +G      PVT+L  ++ G  ++SG  DG VRVW   SRQ +R +  +KG+
Sbjct:   48 HLIALQPGKL---ALHMHMWGKDVPTLKCHVTEPMGPLVTTRDGNFCLAGGASGKIYVWCVASGALLHVWDGHYKAVSALSMTPDDAFLVSGGEDAVVHVWRLLDILAASDGTSSLTQGLAPLHTWTDHVLPITHVHC-GFGGRVFTASLDRTAKIWDLYAGSALVSVTCPSFLNVCVPDAMEHRLFLGAGDGRIYVVDLHAAATAATAATARVVHTAAG---TPFSLETLSAEGFVGHEHPVTTLVVSLCGRFVVSGDDDGVVRVWDSVSRQALRTMNFVKGS 324          
BLAST of mRNA_P-wetherbeei_contig2070.3.3 vs. uniprot
Match: A0A024TIW6_9STRA (Uncharacterized protein n=13 Tax=Aphanomyces TaxID=100860 RepID=A0A024TIW6_9STRA)

HSP 1 Score: 200 bits (508), Expect = 3.260e-55
Identity = 114/283 (40.28%), Postives = 163/283 (57.60%), Query Frame = 2
Query:  161 HSLLCSPPKAKGSAIHIWNWSGTQPRFRCHAAERIGPVATTSDGALCAVGGITGKVYLWELSTGTLLCVWDGHYKAVRALCFSGDESRLYSGGEDAMLSAWDVLTLDGGGGRGSG--QSVSPLWTASDHSLPVTAVHAP--SVGARVYSASLDRTGKVWDAVAGRLLFSFAVGTSLAAVATDPAQSFVFLGADDGRIFQFDMDTSAAAATDVLVRHIDAGIVDSPPALQELSCDG-----KPVTSLASTVAGDLLLSGHSDGSVRVWHVASRQCVRKLGPLKG 982
            H +   P K    A+H+  W    P F+CH  E +GP+ TTS+G  C  GG +GK+YLW +++G LL VWD HYKAV AL  + D++ + SGGEDA++  W +L L       S    S +P++T +DH LP+T++H     V  RV+++SLDRT KV+D  +G  L S    + +     D  ++ +FLGA DGRI+  D+  +A AAT    R + A    +P A   LS DG      PVT+L  +V G  ++SG  +G+VRVW   SRQ +R +  LKG
Sbjct:   48 HLIALQPGKL---AMHMHMWGKDVPHFKCHVTEHMGPMVTTSEGNYCIAGGASGKMYLWCVASGALLHVWDAHYKAVSALRLTSDDAFVVSGGEDAVVHVWRLLDLLDASSTDSALQSSAAPVYTWTDHVLPITSIHCGLGGVNGRVFTSSLDRTTKVYDIPSGSCLVSITCPSFINVCVADAMENRLFLGAGDGRIYVVDLHAAATAATAAAARVVVAH-GGTPFAKDALSMDGFVGHETPVTALLVSVCGQYVISGDDEGTVRVWDSVSRQSLRAVSFLKG 326          
BLAST of mRNA_P-wetherbeei_contig2070.3.3 vs. uniprot
Match: A0A6H5JBW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW7_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 5.870e-53
Identity = 168/482 (34.85%), Postives = 220/482 (45.64%), Query Frame = 2
Query:  185 KAKGSAIHIWNWSGTQPRFRCHAAERIGPVATTSDGALCAVGGITGKVYLWELSTGTLLCVWDGHYKAVRALCFSGDESRLYSGGEDAMLSAWDVLT-LDGGGGRG----------SGQSVSPLWTASDHSLPVTAVHAPSVGARVYSASLDRTGKVWDAVAGRLLFSFAVGTSLAAVATDPAQSFVFLGADDGRIFQFDMDTSAAAATDVLVRHIDAGIVDSPPALQELSCDGKPVTSLASTVAGDLLLSGHSDGSVRVWHVASRQCVRKLGPLKGARGGRRAAPERHNSVAVSWFQLSGGRGVGKDGMRERTCPISSVVIFARPEPRLDAQPTPMTVPVAPFKKFGAASCSGDGQDAALAPPLVVLAPAGQTST---GAPLRRGKRRRLVEPPLSPSEA---VAAA---------GGWSSQSAGAPMEAEG-----EEGHAAAAADSAKKLREMAATIEKLQDETRRWQQVNAALWTRLG 1537
            + KG+A+H W W   QPR +CHA E++GP+A T                      G   C      KAV AL FS +   L+SGGEDAM+S+W++L  +D  GG               S+   WT+S+HSLPVT +HA   G RVYS SLDRT K WDA +GRLL S      L AVATDPA++F+F G   G IFQ            V V+     +V      QEL    K VTSL+ T    +L+S   DG+VR WHVASRQCV+K   + G +G    A       A+   + +G  G      R+R                        +VP++PF KF  +S S  G+    A  +     AG T     GA   RG+    +      S +   V AA         G  SS+  G     EG     EEG  AA      K+ ++   IE+L+ E  RWQQVN  L+ +LG
Sbjct:   52 QVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAVT----------------------GRKRC------KAVSALAFSPEGYFLFSGGEDAMVSSWNMLAAVDPDGGEAFKGXXXXXXXXKSSLPATWTSSEHSLPVTCLHAAKAGGRVYSCSLDRTAKAWDACSGRLLLSVTCPAFLKAVATDPAEAFLFTGGGGGTIFQ------------VFVQGFLTELVAI--CCQELHGHEKAVTSLSVTADSSVLVSSSEDGTVRSWHVASRQCVQKTEGVVGGKGAVSQALLMPLPEALMMVRAAGAGG------RKR-----------------------QSVPLSPFDKFMRSSSSSSGKIKPGAGGMGFDFSAGCTPVVLKGAHCPRGRLSGAISGGTGGSASTIGVRAALDAIQGRGLGMQSSRGGGGAATCEGRREEREEGERAA------KVAKLEGEIERLRSENLRWQQVNNTLFQKLG 456          
BLAST of mRNA_P-wetherbeei_contig2070.3.3 vs. uniprot
Match: A0A835YRW0_9STRA (Quinon protein alcohol dehydrogenase-like superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW0_9STRA)

HSP 1 Score: 185 bits (469), Expect = 9.070e-50
Identity = 133/368 (36.14%), Postives = 184/368 (50.00%), Query Frame = 2
Query:  245 CHAAERIGPVATTSDGALCAVGGITGKVYLWELSTGTLLCVWDGHYKAVRALCFSGDESRLYSGGEDAMLSAWDVL-TLDGGGGR----GSGQSVSPLWTASDHSLPVTAVHAPSVGARVYSASLDRTGKVWDAVAGRLLFSFAVGTSLAAVATDPAQSFVFLGADDGRIFQFDMDTSAAAATDVLVRHIDAGIV------------DSPPA-----LQELSCDGKPVTSLASTVAGDLLLSGHSDGSVRVWHVASRQCVRKLGPLKGARGGRRAAPERHNSVAVSWFQLSGGRGVGKDGMRERTCPISSVVIFARPEPRLDAQPTPMTVPVAPFKKFGAASCSGDGQDAALAPPLVVLAPAGQTSTG 1282
            CHA ERIGP+A + DGA C  GG++G++YLWE+ +G L         AV ALCFS D   ++SG EDAM S W VL  LD   G     GS   ++  W+  +H+L VT +     G R+ +ASLDRT K+++A  G ++ S    + L AV  D  ++F+F+GA +G I+Q D   +AAAAT      I  G              D P A     LQEL    K VTSLA TV G  ++S   DG+VR WHVASRQC+  +                  S  +S   L                 + + + F++       QP+ +T+PVAPFKK  A +  G G +A   PP+V    +G+  +G
Sbjct:   10 CHAPERIGPLAVSGDGAYCVGGGVSGRLYLWEVGSGAL---------AVSALCFSLDGCFIFSGAEDAMASCWGVLEALDCDSGNTLMAGSSAGLTAEWSTGEHTLAVTCIGTSQAGDRLITASLDRTAKMYEAATGEVVLSVLCPSPLRAVCCDANENFLFMGAANGTIYQLDTSAAAAAATMADATAISLGTKRAAAAGGLFGSEDRPGAAAGASLQELVGHQKAVTSLACTVDGSTIVSCAEDGAVRTWHVASRQCLLTVNVA---------------SAGLSQVLLVN---------------MPAAMFFSQ-----GLQPS-LTLPVAPFKKHIAVT--GAGANAPSCPPVVFRGSSGEAISG 330          
BLAST of mRNA_P-wetherbeei_contig2070.3.3 vs. uniprot
Match: A0A024GLF3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GLF3_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.490e-48
Identity = 104/281 (37.01%), Postives = 157/281 (55.87%), Query Frame = 2
Query:  164 SLLCSPPKAKGSAIHIWNWSGTQPRFRCHAAERIGPVATTSDGALCAVGG-ITGKVYLWELSTGTLLCVWDGHYKAVRALCFSGDESRLYSGGEDAMLSAWDVLT-LDGGGGRGSGQSVSPLWTASDHSLPVTAVHAPS--VGARVYSASLDRTGKVWDAVAGRLLFSFAVGTSLAAVATDPAQSFVFLGADDGRIFQFDMDTSAAAATDVLVRHIDAGIVDS---PPALQELSCDGKP-VTSLASTVAGDLLLSGHSDGSVRVWHVASRQCVRKLGPLKG 982
            SL+C   +A    IH+++WS   P F+CH AE++GPV  T  G     G   +GKVY+W++ TG L+ VWD HYK VRA+  + D+S L + GEDA++  W ++  L+      S QS+S L +  DH LPVT++H     V  RVY++SLDRT K+W   + + L+S  + + +    +D  +  +F G  DG+I+  D+ T+AAA T  + R +     +       L    C  +  +T+L  +  G LL SG +D +VRVW V SRQ +  +   KG
Sbjct:   54 SLVCI--QANKLVIHLYSWSHASPIFKCHVAEKLGPVCVTQCGNFVFAGAQSSGKVYVWDVKTGQLVAVWDAHYKGVRAIALTSDDSHLVTAGEDAIVHVWRLVDILEESDASTSFQSMSSLVSWIDHVLPVTSIHTSQGGVNGRVYTSSLDRTCKIWSLFSKQCLYSITLPSFVNVCLSDELEQHLFAGCGDGKIYCIDLHTAAAANTAAMARIVQEKASNKNGHTSLLSNFLCGHEDSITALQVSACGSLLYSGSADSTVRVWDVYSRQTLHTMKLFKG 332          
BLAST of mRNA_P-wetherbeei_contig2070.3.3 vs. uniprot
Match: A0A662Y3H9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y3H9_9STRA)

HSP 1 Score: 179 bits (455), Expect = 3.260e-47
Identity = 104/279 (37.28%), Postives = 153/279 (54.84%), Query Frame = 2
Query:  200 AIHIWNWSGTQPRFRCHAAERIGPVATTSDGALCAVGGITGKVYLWELSTGTLLCVWDGHYKAVRALCFSGDESRLYSGGEDAMLSAWDVLTLDGGGGRGSG--QSVSPLWTASDHSLPVTAVHAP--SVGARVYSASLDRTGKVWDAVAGRLLFSFAVGTSLAAVATDPAQSFVFLGADDGRIFQFDMDTSAAAATDVLVRHIDAGIVDSPP------------ALQELSCDG--KPVTSLASTVAGDLLLSGHSDGSVRVWHVASRQCVRKLGPLKG 982
            A+H+WNW    P ++CH AE++GPVATTS G     G  +GKVY+W++ TG L+ V+D HYK V AL  + D+S L + GEDA++  W ++ L       S   Q V+P  + +DH LPVTAVH     V AR+Y++SLDRT K+W   + + L+S +  + + A   DP +  +F+G  +G I+  D+  +A++ T    R  +A +  S              AL   + +G    VT L    +G  L+SG   G VRVW   SRQ +R +   KG
Sbjct:   63 AVHLWNWGKDMPVWKCHVAEKLGPVATTSCGNFLFAGAQSGKVYVWDVKTGELVTVFDAHYKRVSALALTSDDSHLITAGEDALVHVWRLVDLLDEPDVTSSFQQGVTPSVSFTDHVLPVTAVHVGLGGVNARIYTSSLDRTCKIWTLSSSQCLYSVSCPSYVNACVADPMEHRLFMGCGNGHIYALDLHAAASSLTAATARVANASVSSSSSNGRADLSPWGSEALLPEAFEGHESSVTMLQVHQSGAFLVSGDESGVVRVWDSLSRQSLRTIKLFKG 341          
BLAST of mRNA_P-wetherbeei_contig2070.3.3 vs. uniprot
Match: F0WJ69_9STRA (WD domaincontaining protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJ69_9STRA)

HSP 1 Score: 178 bits (452), Expect = 5.030e-47
Identity = 102/280 (36.43%), Postives = 157/280 (56.07%), Query Frame = 2
Query:  164 SLLCSPPKAKGSAIHIWNWSGTQPRFRCHAAERIGPVATTSDGALCAVGGI-TGKVYLWELSTGTLLCVWDGHYKAVRALCFSGDESRLYSGGEDAMLSAWDVLTLDGGGGRGSGQSVSPLWTASDHSLPVTAVHAPS--VGARVYSASLDRTGKVWDAVAGRLLFSFAVGTSLAAVATDPAQSFVFLGADDGRIFQFDMDTSAAAATDVLVR--HIDAGIVDSPPALQELSCDGKP--VTSLASTVAGDLLLSGHSDGSVRVWHVASRQCVRKLGPLKG 982
            SL+C   +A    IHI+ WS   P FRCH AER+GPV  T  G     G   +GKVY+W++ TG L+ VWD HYK VRA+  + D+S L + GEDA++  W ++ +      G G ++S L + +DH LP+T+VH+    V  RVY++SLDRT K+W   +   L++  + + +    +D  +  +F G  DG+++  D+  +AAA T  + R  H     ++   +L      G    VT++  +  G  L+SG +D +VRVW V SRQ ++ +   KG
Sbjct:   52 SLVCI--QANKLVIHIYTWSQGAPIFRCHVAERLGPVCVTQCGNFVFAGAQESGKVYVWDVKTGQLVAVWDAHYKGVRAIALTSDDSHLITAGEDAIVHVWRLVDILEESDAGFG-NMSTLVSWTDHVLPITSVHSSQGGVNGRVYTSSLDRTCKIWSIFSKHCLYTITLPSFVNVCLSDRLEQRLFAGCGDGKVYCIDLHAAAAANTAAMARIVHTKTSHINDSTSLLSNFLHGHEDSVTAMQLSACGRFLISGSADSTVRVWDVHSRQTLQTMKLFKG 328          
BLAST of mRNA_P-wetherbeei_contig2070.3.3 vs. uniprot
Match: A0A0W8C8Y1_PHYNI (20S-pre-rRNA D-site endonuclease nob1 n=17 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C8Y1_PHYNI)

HSP 1 Score: 176 bits (446), Expect = 5.410e-46
Identity = 96/275 (34.91%), Postives = 154/275 (56.00%), Query Frame = 2
Query:  200 AIHIWNWSGTQPRFRCHAAERIGPVATTSDGALCAVGGITGKVYLWELSTGTLLCVWDGHYKAVRALCFSGDESRLYSGGEDAMLSAWDVLTL--DGGGGRGSGQSVSPLWTASDHSLPVTAVHAP--SVGARVYSASLDRTGKVWDAVAGRLLFSFAVGTSLAAVATDPAQSFVFLGADDGRIFQFDMDTSAAAATDVLVRHIDAGIVDS--------PPALQELSCDG--KPVTSLASTVAGDLLLSGHSDGSVRVWHVASRQCVRKLGPLKG 982
            A+++WNW    P ++CH AE++GP+ ++S G     G  +GKVY+W++ TG L+ V+D HYK V AL  + D+S L + GEDA++  W ++ L  +        Q V+P+ + +DH LPVT++H     V AR+Y++SLDRT K+W   + + L+S +  + +     DP +  +F+G  +G+I+  D++ +A + T    R  +A    S        P AL   S +G    VT+L    +G  L+SG   G+V VW   SRQ +R +   KG
Sbjct:   62 ALNLWNWGKDMPVWKCHVAEKMGPITSSSCGNFLFAGAESGKVYVWDVKTGELVTVFDAHYKRVSALALTSDDSHLITAGEDALVHVWRLVDLLDEPDAASSFQQGVTPVVSFTDHVLPVTSLHVGLGGVNARIYTSSLDRTCKIWSLNSSQCLYSVSCPSYVNVCIADPMEQRLFMGCGNGQIYALDLNAAATSVTAATARVANASTGSSSANVAPWGPEALLPDSFEGHESSVTTLQIHTSGAFLVSGDESGAVHVWDSLSRQSLRNIKLFKG 336          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2070.3.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY25_ECTSI5.930e-8046.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A067CCG4_SAPPC2.060e-5942.76Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZLK9_9STRA5.700e-5841.55WD domain-containing protein n=1 Tax=Achlya hypogy... [more]
A0A024TIW6_9STRA3.260e-5540.28Uncharacterized protein n=13 Tax=Aphanomyces TaxID... [more]
A0A6H5JBW7_9PHAE5.870e-5334.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YRW0_9STRA9.070e-5036.14Quinon protein alcohol dehydrogenase-like superfam... [more]
A0A024GLF3_9STRA1.490e-4837.01Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A662Y3H9_9STRA3.260e-4737.28Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
F0WJ69_9STRA5.030e-4736.43WD domaincontaining protein putative n=1 Tax=Albug... [more]
A0A0W8C8Y1_PHYNI5.410e-4634.9120S-pre-rRNA D-site endonuclease nob1 n=17 Tax=Phy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2070contigP-wetherbeei_contig2070:1662..5327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FY25
Preferred nameWDR18
PFAMsWD40,WD40_alt
Model size1754
Max annot lvl2759|Eukaryota
KEGG koko:K14829,ko:K21412
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000027,GO:0000151,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005694,GO:0005720,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006275,GO:0006325,GO:0006342,GO:0006355,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007368,GO:0007389,GO:0007548,GO:0008150,GO:0008152,GO:0008406,GO:0009058,GO:0009059,GO:0009799,GO:0009855,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016072,GO:0016458,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030174,GO:0030702,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0032993,GO:0033260,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0036387,GO:0036388,GO:0040029,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044786,GO:0045137,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048468,GO:0048509,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051093,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0060255,GO:0061458,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070121,GO:0070925,GO:0071704,GO:0071824,GO:0071826,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:0090329,GO:0097344,GO:1901360,GO:1901576,GO:1902183,GO:1902184,GO:1902299,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Exons8
Evalue4.8e-36
EggNOG OGsCOG2319@1|root,KOG0646@2759|Eukaryota
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-08_004790.1
DescriptionrRNA processing
Cds size1137
COG categoryK
BRITEko00000,ko03009,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2070.3.3prot_P-wetherbeei_contig2070.3.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2070 2408..5158 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186206.9050515-UTR-P-wetherbeei_contig2070:1661..20461683186206.9050515-UTR-P-wetherbeei_contig2070:1661..2046Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2070 1662..2046 +
1683186206.9151316-UTR-P-wetherbeei_contig2070:2344..24071683186206.9151316-UTR-P-wetherbeei_contig2070:2344..2407Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2070 2345..2407 +
1683186206.9801643-UTR-P-wetherbeei_contig2070:5158..53271683186206.9801643-UTR-P-wetherbeei_contig2070:5158..5327Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2070 5159..5327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186206.9233801-CDS-P-wetherbeei_contig2070:2407..24671683186206.9233801-CDS-P-wetherbeei_contig2070:2407..2467Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2070 2408..2467 +
1683186206.9315155-CDS-P-wetherbeei_contig2070:2897..31341683186206.9315155-CDS-P-wetherbeei_contig2070:2897..3134Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2070 2898..3134 +
1683186206.939637-CDS-P-wetherbeei_contig2070:3455..35361683186206.939637-CDS-P-wetherbeei_contig2070:3455..3536Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2070 3456..3536 +
1683186206.9477282-CDS-P-wetherbeei_contig2070:3782..40501683186206.9477282-CDS-P-wetherbeei_contig2070:3782..4050Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2070 3783..4050 +
1683186206.9558167-CDS-P-wetherbeei_contig2070:4187..43151683186206.9558167-CDS-P-wetherbeei_contig2070:4187..4315Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2070 4188..4315 +
1683186206.9639025-CDS-P-wetherbeei_contig2070:4511..47961683186206.9639025-CDS-P-wetherbeei_contig2070:4511..4796Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2070 4512..4796 +
1683186206.9719894-CDS-P-wetherbeei_contig2070:5080..51581683186206.9719894-CDS-P-wetherbeei_contig2070:5080..5158Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2070 5081..5158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2070.3.3

>prot_P-wetherbeei_contig2070.3.3 ID=prot_P-wetherbeei_contig2070.3.3|Name=mRNA_P-wetherbeei_contig2070.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=379bp
MLSAWDVLTLDGGGGRGSGQSVSPLWTASDHSLPVTAVHAPSVGARVYSA
SLDRTGKVWDAVAGRLLFSFAVGTSLAAVATDPAQSFVFLGADDGRIFQF
DMDTSAAAATDVLVRHIDAGIVDSPPALQELSCDGKPVTSLASTVAGDLL
LSGHSDGSVRVWHVASRQCVRKLGPLKGARGGRRAAPERHNSVAVSWFQL
SGGRGVGKDGMRERTCPISSVVIFARPEPRLDAQPTPMTVPVAPFKKFGA
ASCSGDGQDAALAPPLVVLAPAGQTSTGAPLRRGKRRRLVEPPLSPSEAV
AAAGGWSSQSAGAPMEAEGEEGHAAAAADSAKKLREMAATIEKLQDETRR
WQQVNAALWTRLGDPGGGGTAVGGDDSA*
back to top

mRNA from alignment at P-wetherbeei_contig2070:1662..5327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2070.3.3 ID=mRNA_P-wetherbeei_contig2070.3.3|Name=mRNA_P-wetherbeei_contig2070.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3666bp|location=Sequence derived from alignment at P-wetherbeei_contig2070:1662..5327+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCCACTCACGTCCTTCAAAAGCAATCTCGCGGCTCTGAGTGGCACCGC CGTCGTTGCTGGGGAACTTGTCGTCAGCGCGCAGGCAAGTGCTTCTCTTT GAGGCCGTCTTTGCTTTGCTCGTTTCTGAATTTGGTTACTGACACTTGAG ATCGGTGCCTCATTCCTTGCTGTGTTCTCCTCCGAAGGCAAAAGGCTCGG CCATCCACATCTGGAACTGGTCCGGCACCCAGCCACGCTTCCGCTGCCAC GCTGCCGAGCGCATCGGCCCGGTGGCCACGACCAGCGACGGCGCTCTGTG CGCTGTGGGCGGGATCACTGGCAAGGTCTACTTGTGGGAACTCAGCACCG GCACGCTCTTATGCGTGTGGGATGGCCACTACAAAGTAAGGAGATGGCTT CGGTGTGTCGTGTGGTAGAAGGATTTTCTCTTCGAATTGCGAAACGTAGA TATGTTGGAAGGCCTGAAAGAGAAGGACCTCGTAACACGTCGCGATCGAT GTCTTTGCAAGAGAGAGGACAGCGCAAACGTGTCTTATCAGACGGCAAGT GCTGTTTTCGTTGCAGATCGGGGTCTGAATCGCAGAGAATCCTGAAAGAA GTCATGCTAAACCATTTGACCTTTATTTGGAGCATCGGACTGATATCTCA CAATCTTTGCGTTTTCCATGCACTACTTGACAGGCCGTGCGCGCTCTCTG CTTCAGCGGTGATGAAAGTCGCCTCTACTCTGGCGGAGAGGACGCCATGC TGTCTGCCTGGGATGTCCTGACCCTTGACGGTGGTGGTGGCCGTGGCAGC GGGCAGGCGGGTTGAGTTTCGCCTCCTTTTTTCCGCGCTATAGGCTTGAC TCCAGTTTCGCTCCGCTCCGTTTTAGGTTTGCTTCAAAGCTGAACCTGTA TCGAATGCTTGTTTTGGTGACGGATGTAGAAGGCGGCTCTAGTGGTTTTC GGCCATCGTTCTTATTTCTAGCGCTGTTGCTTGAAGTGAAAAGGTTGCCG GTGGTAAAAGACGGGAATTATTGTTCGCTGCTGCGAGTCCGATTTTAGTT GAAGATATGTGCATTCATGAGTTCCATTTGCCTGCCGCCGTTTTCCCCTC GTAGTTACCACAATATTTCTCACCACCTCGGTTACCACTGCCTTTTAATC GCTGTGACTCGTTATGGCCGCCTGTCTCTACCGCCGCCGCCGCCGTCGTG GCTGCCGCCGGTGACCATTCCTCTCTTTGAGCGTAGTCGGTGAGCCCGCT CTGGACGGCCTCGGACCACAGCCTCCCCGTTACAGCCGTCCACGCGCCGT CGGTCGGCGCCCGCGTCTACTCGGCGTCCCTGGACCGGACGGGCAAGGTG TGGGACGCCGTGGCGGGGCGTCTGCTGTTTTCGTTCGCGGTCGGCACATC GCTGGCCGCTGTTGCGACGGATCCGGCGCAGTCATTCGTCTTCTTGGGAG CGGATGACGGACGGATCTTTCAGGTGCGTTTTGCTGCTTCGCTTGTTTCT TATTATTTGCTGTTCTTCGAGGAAGGCAGGTCTGCCTGAGTTGGATCGAT GCTCTGCTTGAATTGCTGATTCTGCATTGCTTTGCGGCGGCATCAGTGGT GCTTCGAGGGGGTTCGCATGTTTTGAGCAATGCACTTATCTGGTATGTAT CCCAATCTCTGCATCGTTTCGTGGTGGCGCCGATCATTGTCTACATGGTT TCTAACTCTACTCCCCCCGTTTTTCCCTGTTCTCAGGTACTTTGCCTCGA TTTGCCCCCCCGCCCATTTGGCCTACCATCATGTCTCTTGCCAGTTTGAC ATGGACACCTCGGCAGCGGCGGCGACGGACGTGTTGGTGCGGCACATCGA CGCCGGCATCGTCGACTCCCCGCCGGTGCGTTCCAACCTGCCTTTTCAGA ACTACGCATGTCATTATTCTTTTTGCCGATTGCGGAAGCTTTGACGGACG AACCTTGCTGTTTCAGATCATTATCATTCATTTCGGACAACTTTCTCCCT ATCGGTTGGCCGAGGTTGATCCACTTTCCTGTACCGCAAACAAAGAAACC TTCCAGATGCCGAAATGTAAGTCCAATTTGCCATTTCGCTTCCCTCCAAC GCTTTTCAAATCCTCGGACAGGCGCTGCAGGAGCTGTCGTGCGATGGCAA ACCGGTGACGTCGCTGGCCTCCACCGTCGCCGGCGACCTGCTGCTTTCAG GCCACAGCGATGGCAGCGTCCGCGTGTGGCACGTCGCCAGCCGGCAGTGC GTGCGGAAACTCGGGCCCCTCAAAGGTGCACGGGGCGGGCGGAGGGCGGC GCCAGAGCGGCACAACAGCGTGGCTGTTTCTTGGTTTCAGCTTTCTGGCG GAAGAGGCGTGGGTAAAGACGGCATGCGGGAACGAACGTGTGAGAATGCG GCGACATTGGGGAGTGCTGTTTTGCGCGGTTGAGGGTGCCAAGGCATCCG CATCCCTTTTAGTGTGGCAGGATCTGACTTTTTGTAAGCGTTCTTCTTTG AAGCTTTCATATATTTCCGCCAGCAGGCCCGATATCGTCAGTGGTCATCT TCGCGCGCCCAGAGCCTCGATTGGACGCTCAGCCGACGCCAATGACGGTG CCGGTGGCGCCCTTCAAGAAGTTTGGCGCAGCGTCATGTTCAGGGGACGG TCAGGTGCGTGGCAGCGAAGTCGAGGAGCCGCACTGCCGTTATCGCTTAT ACTTAATCGAAAGTATGAAAGCAAGTCATATTATATAGAACCGCATGCGC TGCAAGAGGCGCAAGGGTTTTGGGATAGATTTTCGTACGCCGTCTTTGGC CCCTTAGACGCCATGTTCACTGCTGCGCGCTGCTTCCTCCGCCTTTACAG GACGCGGCATTGGCACCGCCGCTAGTGGTGCTGGCGCCAGCGGGCCAAAC AAGCACTGGAGCGCCGCTGCGGAGAGGGAAGCGACGCCGTTTGGTGGAGC CACCTTTGTCTCCATCGGAAGCGGTGGCGGCTGCGGGCGGCTGGAGCAGC CAAAGTGCAGGGGCACCGATGGAGGCGGAGGGAGAGGAGGGGCATGCGGC AGCGGCGGCGGATAGCGCTAAGAAGCTTCGGGAAATGGCTGCGACCATCG AGAAGCTCCAAGACGAAACGCGGCGCTGGCAACAGGTGATGCTGTCTTTT TTAATTGTCGACTCCTGAGAGCCTAGATACTGCGCAGCTTTCGTTTTCTT GGCGTAGTAATCCGGGTCTGCAAGCAGTTTGGGTTCTATGGCCTAAAGCG ACCTTCCAAAATAGTTCTAGGTGCTTCAAATGGTGGCCTGTAGATAGTGG CATCGAAGAGCTTTCGTGGCGGTTGTTTTTTGTTGACGGTGAAAGGAGAC ACAGCGGTCTGGACACACGAAACCTCCGGCTGACACTTTCCTCGCTGCGC ATCTTTCTTCATGCCACAGGTCAACGCTGCTTTGTGGACCCGACTCGGGG ATCCAGGCGGTGGGGGCACTGCCGTTGGGGGCGATGACAGTGCATGATAC ACACATACTGACGAATGGCAATTTATTCACCACATGAGCATAGTAGAACA GACTTGAACGTGCCGAGATACGGTAACGGTGATTCCGATCTTTTCTTCTC CTTGGAGTAGCCTTCGGGGCCTGGAAGGAGGGGAATGAAATTACTAAGCC CGAGCCATCAACGTGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig2070:1662..5327+

>mRNA_P-wetherbeei_contig2070.3.3 ID=mRNA_P-wetherbeei_contig2070.3.3|Name=mRNA_P-wetherbeei_contig2070.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1137bp|location=Sequence derived from alignment at P-wetherbeei_contig2070:1662..5327+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGTCTGCCTGGGATGTCCTGACCCTTGACGGTGGTGGTGGCCGTGG
CAGCGGGCAGTCGGTGAGCCCGCTCTGGACGGCCTCGGACCACAGCCTCC
CCGTTACAGCCGTCCACGCGCCGTCGGTCGGCGCCCGCGTCTACTCGGCG
TCCCTGGACCGGACGGGCAAGGTGTGGGACGCCGTGGCGGGGCGTCTGCT
GTTTTCGTTCGCGGTCGGCACATCGCTGGCCGCTGTTGCGACGGATCCGG
CGCAGTCATTCGTCTTCTTGGGAGCGGATGACGGACGGATCTTTCAGTTT
GACATGGACACCTCGGCAGCGGCGGCGACGGACGTGTTGGTGCGGCACAT
CGACGCCGGCATCGTCGACTCCCCGCCGGCGCTGCAGGAGCTGTCGTGCG
ATGGCAAACCGGTGACGTCGCTGGCCTCCACCGTCGCCGGCGACCTGCTG
CTTTCAGGCCACAGCGATGGCAGCGTCCGCGTGTGGCACGTCGCCAGCCG
GCAGTGCGTGCGGAAACTCGGGCCCCTCAAAGGTGCACGGGGCGGGCGGA
GGGCGGCGCCAGAGCGGCACAACAGCGTGGCTGTTTCTTGGTTTCAGCTT
TCTGGCGGAAGAGGCGTGGGTAAAGACGGCATGCGGGAACGAACGTGCCC
GATATCGTCAGTGGTCATCTTCGCGCGCCCAGAGCCTCGATTGGACGCTC
AGCCGACGCCAATGACGGTGCCGGTGGCGCCCTTCAAGAAGTTTGGCGCA
GCGTCATGTTCAGGGGACGGTCAGGACGCGGCATTGGCACCGCCGCTAGT
GGTGCTGGCGCCAGCGGGCCAAACAAGCACTGGAGCGCCGCTGCGGAGAG
GGAAGCGACGCCGTTTGGTGGAGCCACCTTTGTCTCCATCGGAAGCGGTG
GCGGCTGCGGGCGGCTGGAGCAGCCAAAGTGCAGGGGCACCGATGGAGGC
GGAGGGAGAGGAGGGGCATGCGGCAGCGGCGGCGGATAGCGCTAAGAAGC
TTCGGGAAATGGCTGCGACCATCGAGAAGCTCCAAGACGAAACGCGGCGC
TGGCAACAGGTCAACGCTGCTTTGTGGACCCGACTCGGGGATCCAGGCGG
TGGGGGCACTGCCGTTGGGGGCGATGACAGTGCATGA
back to top