mRNA_P-wetherbeei_contig2069.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2069.1.1
Unique NamemRNA_P-wetherbeei_contig2069.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2069.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2069contigP-wetherbeei_contig2069:2..3494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1875
Hectar predicted targeting categoryother localisation
Exons6
Cds size1383
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2069.1.1prot_P-wetherbeei_contig2069.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2069 467..3467 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186206.2764657-UTR-P-wetherbeei_contig2069:1..4661683186206.2764657-UTR-P-wetherbeei_contig2069:1..466Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2069 2..466 -
1683186206.3289611-UTR-P-wetherbeei_contig2069:3467..34941683186206.3289611-UTR-P-wetherbeei_contig2069:3467..3494Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2069 3468..3494 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186206.2842133-CDS-P-wetherbeei_contig2069:466..5971683186206.2842133-CDS-P-wetherbeei_contig2069:466..597Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2069 467..597 -
1683186206.2918677-CDS-P-wetherbeei_contig2069:895..10261683186206.2918677-CDS-P-wetherbeei_contig2069:895..1026Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2069 896..1026 -
1683186206.2994883-CDS-P-wetherbeei_contig2069:1345..16681683186206.2994883-CDS-P-wetherbeei_contig2069:1345..1668Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2069 1346..1668 -
1683186206.3067286-CDS-P-wetherbeei_contig2069:2116..22631683186206.3067286-CDS-P-wetherbeei_contig2069:2116..2263Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2069 2117..2263 -
1683186206.3140445-CDS-P-wetherbeei_contig2069:2650..27701683186206.3140445-CDS-P-wetherbeei_contig2069:2650..2770Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2069 2651..2770 -
1683186206.3214731-CDS-P-wetherbeei_contig2069:2936..34671683186206.3214731-CDS-P-wetherbeei_contig2069:2936..3467Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2069 2937..3467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2069.1.1

>prot_P-wetherbeei_contig2069.1.1 ID=prot_P-wetherbeei_contig2069.1.1|Name=mRNA_P-wetherbeei_contig2069.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=461bp
MAYTLKRVTNDGEEILYGFVDTDKPVSNSTSNTPPTEDDTYNVVAGCYVL
ETISTAALPMYSRPELWSWNVGDLAEGYAVDQKTFGVAASLCGIPDCFDD
CRAAGVFEGGVWSSTSKCDNYELLLKECVCKNDRIAMVQHMRDAGCAVPA
PYVVNDAFGEPVKQVTISVTSHPTYTTTISLLMKDTEVPERNVPRAFKTQ
LEGRCMATFLGVYPWSKVQLTEINCKSASSLIGTRRLREQLTDAIRGSAA
ERRLPSIRSLTRLTLTVDASESDDSANDQAYRFESLENKPINDFSSLKSQ
LQANVDLLADPAELMSVEAYSETRDVIDDVVFDVLFLGPTPEPTKAPTPA
PAVGETVAPSPESPTLIEKPQSSTSAGNGSGGGSSEIGMYAGLAVAGLVA
MGMLYCCIGGAARNRQNSKTKKEKAAAQRVADDEAFRSMQAANAAKLAAA
NGPVSAVPLD*
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mRNA from alignment at P-wetherbeei_contig2069:2..3494-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2069.1.1 ID=mRNA_P-wetherbeei_contig2069.1.1|Name=mRNA_P-wetherbeei_contig2069.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3493bp|location=Sequence derived from alignment at P-wetherbeei_contig2069:2..3494- (Phaeothamnion wetherbeei SAG_119_79)
CCCATCGTCGTATCGCGCACTGCGACGATGGCATACACGTTGAAGCGCGT
GACGAACGACGGCGAAGAGATCCTCTACGGATTCGTTGACACCGACAAGC
CTGTGAGCAACAGCACGAGCAACACGCCGCCCACCGAGGACGACACGTAC
AACGTGGTGGCGGGATGCTACGTGCTCGAAACTATCAGCACCGCGGCGCT
GCCGATGTACTCGAGGCCCGAGCTCTGGTCGTGGAACGTCGGCGACCTCG
CGGAGGGCTACGCGGTAGACCAAAAGACATTTGGCGTCGCGGCGTCGCTC
TGCGGCATCCCCGACTGCTTCGATGACTGCCGCGCCGCCGGCGTGTTTGA
GGGCGGCGTCTGGAGCAGCACCTCCAAGTGCGACAACTATGAGCTGCTGC
TGAAGGAGTGCGTCTGCAAGAACGACCGCATCGCCATGGTGCAACACATG
CGGGACGCCGGCTGCGCGGTGCCGGCGCCATACGTCGTCAACGATGCGTT
CGGCGAGCCGGTGAAGCAGGTCACCATCTCCGTCACCAGCCACCCCACGT
ACACGACGGTAAGAAACGGGACAGACAGGTAGGGATGGATTGGATTGCCG
CTGATTTTCGTGGCAAGAGAATCGCTGGCGTCGTACTGCCTGTCTCTTTC
CTAGCTGATGACCCTTAATCATTGCCTTTTTCCGACCTATCTTCCCTCAA
GGCCTTTTTCCCTCCCCGAAACAGACTATCTCCCTCCTCATGAAGGACAC
GGAGGTGCCGGAACGCAACGTTCCGAGGGCGTTCAAGACGCAGCTGGAAG
GCCGCTGCATGGCGACGTTCCTGGGCGTATACCCGTGGTCCAAGGTAAGG
ACGGTGCATTTTTGCCGACTGCCGCAAGTGCTTTCCGCCGCCGCCGCCGC
CGCCGTCGCCTCTGCCGCCGCCGCCGCACCTCCTCATCGTGGTTGCCACC
ACCGCTGTGACGATCGCGTGCGCGCTCTGCCTAGGTCCCCGCCTCGCAGC
CGGCAGCAACCGTTTAGATAGGCATGGTGGTTTTAGGGTTTACCACGCAG
CCACTTAACCCCTTCGGAAAATCCCGTAGGCCTGCCGGTTGCGGGGCTGC
CAAGCGTTTTGTCGCCGTGGGGCGACCTGCTCTTTCGCCAACGGCATCAC
AAGCAGACGTTTTTTTCTTCCAACCAACACCCCTGCACTCCGGCGGCACC
GGCCGGCTGCCTCTGCCTCTTACCGCGGCAGGTTCAACTAACGGAGATCA
ACTGCAAGTCGGCCAGCAGCTTGATCGGCACGCGACGTCTACGGGAGCAG
CTGACCGATGCCATCCGCGGCAGCGCCGCGGAGCGCCGCTTGCCGTCCAT
CCGCTCCCTGACCCGCCTGACTCTCACGGTGAGCCGCCCGCCCGCCTGCC
GCAAAGCGCACGAAGGCAGTCAGCCGGTTGCGAACCGGTCGCCGCCTGTC
CTGCCTTCTTGTACCTCCTAGCTTGCCTTGCACATATGACCTGCCTTTGC
TGCAGCCTGACCTGCGCAGTGCAGCAGCTCCACTCAGATCCAGCCGGCGA
ATTTTACTAAAAGAGACGACATCTCCAATAACTCCGTTGCAACTCTGCCC
TTCCGCGATTCCGGACCGATTGTCTATCTCGCCCGGCCCGCCCCATCATC
ATCACCTTCTGCCTGCCACCCGACGCCGCTCGCCGCCACCACCTGGTGCC
TACCGCCGCCGCCGTCGTTACTGCCGTTGCCGCGCGGCCCTGCCGCCTCT
TCTCTCCCTCCCTTTTCGTCCTTTTGGGTGCGCCCCGCTCCTCCTGCAAC
TTGTGCTGCGTGCCGCACATGCGCAGGTGGACGCGTCCGAGTCGGACGAC
AGCGCCAACGACCAGGCGTACCGCTTCGAGTCGCTCGAGAACAAGCCCAT
CAACGATTTTAGCTCGCTCAAGAGCCAGCTGCAGGCCAACGTGGACCTGC
TGGCAGATCCGGCCGAGCTCATGTCGGTCGAGGCCTACTCAGAGACGCGC
GACGTCATCGACGACGTCGTGTTTGATGTTCTCTTCCTGGGGCCCACACC
CGAGCCTACCAAGGCGCCGACGCCGGCGCCGGCGGTGGGCGAGACCGTAG
CGCCGTCGCCAGAGTCGCCGACGCTCATCGAGAAGCCGCAGTCATCCACG
CGCGTGAACTTTCTTTCTTTCTTTTTCTTGTTTGCTGCTTCTGTTTCTCT
TTTTGAGGGATACTGCATTTCCTCCAGTTTGGCTTGGCGGTGCGTGGCGG
GAGTGGCTGGTGTGGCAGCCAGGCCGCAGCTTTCGCAACGGAGGCAAAGG
ACTGGTAGCGCACGGTCCCAGCCTCACACACGTTCTTTGACGGGCAGCAG
CGGGGAGGATGTTAATACTTATGCTGCTTTCAATCACTAGATACCGATAC
TATTCTAATCTCTCCAAAGCACCGGCCAACTCGGCCTCGTCCGTCCCTCC
TTCCGCCGCCGTAAACAGGTCCGCCGGCAACGGCAGCGGCGGCGGCAGCA
GCGAGATCGGCATGTACGCCGGGCTGGCGGTGGCGGGCCTCGTCGCCATG
GGCATGCTCTACTGCTGCATCGGCGGCGCTGCCCGCAACCGCCAGAACAG
TGAGTGAAACTGACGACAAAGACGGGAGCCATAGTCTATATTGCTGGTAG
AGATCAGGAGAGGGGAGTTCGTGTTGTGCGATACGGTGTGCTCCGTCTGC
TGAAGCACGAACATAAGCCAATTTGATGAGGGATGGAATCGGAAAAGGTC
ATCTACAGACCCCATCCACGTCAAAGTTTCAGCCCAGCATGTGGTTGGCC
TTTCTGGTTCCTGTTGTTCTTGCGTTGGTTGCCGATCCTTTTTTCCAAGC
GTCTCACCCATCCCTTTTCCTTGGCTTCGCATTCTTCCGACCCGCAGGCA
AGACCAAGAAGGAGAAGGCCGCCGCACAGCGGGTGGCGGACGACGAGGCC
TTCCGCTCCATGCAGGCCGCCAACGCTGCGAAGCTGGCCGCCGCCAACGG
CCCGGTGTCGGCCGTGCCTCTGGACTAAACTGGCCTCAGACTGGCAAAGG
CCGGTCGACCCGGTGCGGCGGCGGCATCGCCAGCCACCTGCGGCCGGCCT
CGGGAATAGAGGCGGGCGCGTGGCGCTGGCGGTCTCCGGCCGCGGCAGGT
CCTCTCCAGGGGCGTCGCCGCTGTCTGGATGCCGTTTCTGCTCTGGCACG
CAAAGCTGCATCCGTGCCTGTTCTGTTTTCTGAAGTGCTATGAAGTCATG
AAAGTTGTCTTCCTTGTCCACGGTCCCAGGCATGCACATGATGCTCACCT
GTGGTGAAAGTATCATCACACATGGCACTTTCTGTGGTAATTATGTCTGT
CATGAAGGAGCAGCCATGGGAGGCACACTCCGAAACCTGCCGTTTGGTGT
CATCACAAGTGGGTCTTCTTTTTATCTGTGGGGAAGCAGCTATTTGTAGG
CCGCCGCGAGACTTAAGCGTATCATAAAAAAATAATCGAGCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2069:2..3494-

>mRNA_P-wetherbeei_contig2069.1.1 ID=mRNA_P-wetherbeei_contig2069.1.1|Name=mRNA_P-wetherbeei_contig2069.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1383bp|location=Sequence derived from alignment at P-wetherbeei_contig2069:2..3494- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCATACACGTTGAAGCGCGTGACGAACGACGGCGAAGAGATCCTCTA
CGGATTCGTTGACACCGACAAGCCTGTGAGCAACAGCACGAGCAACACGC
CGCCCACCGAGGACGACACGTACAACGTGGTGGCGGGATGCTACGTGCTC
GAAACTATCAGCACCGCGGCGCTGCCGATGTACTCGAGGCCCGAGCTCTG
GTCGTGGAACGTCGGCGACCTCGCGGAGGGCTACGCGGTAGACCAAAAGA
CATTTGGCGTCGCGGCGTCGCTCTGCGGCATCCCCGACTGCTTCGATGAC
TGCCGCGCCGCCGGCGTGTTTGAGGGCGGCGTCTGGAGCAGCACCTCCAA
GTGCGACAACTATGAGCTGCTGCTGAAGGAGTGCGTCTGCAAGAACGACC
GCATCGCCATGGTGCAACACATGCGGGACGCCGGCTGCGCGGTGCCGGCG
CCATACGTCGTCAACGATGCGTTCGGCGAGCCGGTGAAGCAGGTCACCAT
CTCCGTCACCAGCCACCCCACGTACACGACGACTATCTCCCTCCTCATGA
AGGACACGGAGGTGCCGGAACGCAACGTTCCGAGGGCGTTCAAGACGCAG
CTGGAAGGCCGCTGCATGGCGACGTTCCTGGGCGTATACCCGTGGTCCAA
GGTTCAACTAACGGAGATCAACTGCAAGTCGGCCAGCAGCTTGATCGGCA
CGCGACGTCTACGGGAGCAGCTGACCGATGCCATCCGCGGCAGCGCCGCG
GAGCGCCGCTTGCCGTCCATCCGCTCCCTGACCCGCCTGACTCTCACGGT
GGACGCGTCCGAGTCGGACGACAGCGCCAACGACCAGGCGTACCGCTTCG
AGTCGCTCGAGAACAAGCCCATCAACGATTTTAGCTCGCTCAAGAGCCAG
CTGCAGGCCAACGTGGACCTGCTGGCAGATCCGGCCGAGCTCATGTCGGT
CGAGGCCTACTCAGAGACGCGCGACGTCATCGACGACGTCGTGTTTGATG
TTCTCTTCCTGGGGCCCACACCCGAGCCTACCAAGGCGCCGACGCCGGCG
CCGGCGGTGGGCGAGACCGTAGCGCCGTCGCCAGAGTCGCCGACGCTCAT
CGAGAAGCCGCAGTCATCCACGTCCGCCGGCAACGGCAGCGGCGGCGGCA
GCAGCGAGATCGGCATGTACGCCGGGCTGGCGGTGGCGGGCCTCGTCGCC
ATGGGCATGCTCTACTGCTGCATCGGCGGCGCTGCCCGCAACCGCCAGAA
CAGCAAGACCAAGAAGGAGAAGGCCGCCGCACAGCGGGTGGCGGACGACG
AGGCCTTCCGCTCCATGCAGGCCGCCAACGCTGCGAAGCTGGCCGCCGCC
AACGGCCCGGTGTCGGCCGTGCCTCTGGACTAA
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