mRNA_P-wetherbeei_contig20674.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20674.1.1
Unique NamemRNA_P-wetherbeei_contig20674.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20674.1.1 vs. uniprot
Match: A0A523P6Y8_9PROT (Alpha/beta hydrolase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P6Y8_9PROT)

HSP 1 Score: 196 bits (499), Expect = 2.610e-60
Identity = 90/138 (65.22%), Postives = 111/138 (80.43%), Query Frame = 1
Query:    1 DDDRQRRVEGKPSQYMKMCTLDPTEPHLFPGDQTYNFIHRYIGKGKKSTWENRVTLRSIDYMLEYDVSGYMKLISPTPLLMIVSEFDTCTPTDIALDHFNMVPGPKQLHIIDSDHYEAYVEKFDETSSVARDFFCANL 414
            D DR RR+ G+PS+YMKMC+LDP EPH+FPG++TYN+IH +I     STWENRVTLRSI+YM+EYD SG+M +ISPTPLLMI++  DT TP+DI+LD +  V GPK L IIDSDHY AY+EKFD TS+ ARD+F   L
Sbjct:  160 DADRARRLRGEPSEYMKMCSLDPNEPHVFPGEKTYNYIHSFIDNDPDSTWENRVTLRSIEYMMEYDASGFMDMISPTPLLMILARNDTTTPSDISLDCYAKVAGPKDLLIIDSDHYAAYIEKFDVTSAAARDWFVQYL 297          
BLAST of mRNA_P-wetherbeei_contig20674.1.1 vs. uniprot
Match: A0A1Z9UKL0_9GAMM (Peptidase_S15 domain-containing protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UKL0_9GAMM)

HSP 1 Score: 189 bits (479), Expect = 2.740e-57
Identity = 84/132 (63.64%), Postives = 109/132 (82.58%), Query Frame = 1
Query:   19 RVEGKPSQYMKMCTLDPTEPHLFPGDQTYNFIHRYIGKGKKSTWENRVTLRSIDYMLEYDVSGYMKLISPTPLLMIVSEFDTCTPTDIALDHFNMVPGPKQLHIIDSDHYEAYVEKFDETSSVARDFFCANL 414
            RV GK S+Y+KMC+LDP EPH+FPG++TYN+IH ++    + TWENRVT+RS++YM+EYDV+GYMK ISPTPLLMIVSE DT TP+DIALD +++VPGPK L +I+S+HY AY EK  ETSS A ++F  +L
Sbjct:  166 RVSGKKSKYVKMCSLDPEEPHVFPGEETYNYIHXFVDSDPECTWENRVTVRSLEYMVEYDVTGYMKQISPTPLLMIVSEIDTTTPSDIALDLYSLVPGPKDLVVINSNHYGAYTEKXKETSSAASNWFXXHL 297          
BLAST of mRNA_P-wetherbeei_contig20674.1.1 vs. uniprot
Match: A0A4S3K7N0_9GAMM (Peptidase_S15 domain-containing protein n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4S3K7N0_9GAMM)

HSP 1 Score: 159 bits (401), Expect = 1.540e-45
Identity = 72/138 (52.17%), Postives = 103/138 (74.64%), Query Frame = 1
Query:    1 DDDRQRRVEGKPSQYMKMCTLDPTEPHLFPGDQTYNFIHRYIGKGKKSTWENRVTLRSIDYMLEYDVSGYMKLISPTPLLMIVSEFDTCTPTDIALDHFNMVPGPKQLHIIDSDHYEAYVEKFDETSSVARDFFCANL 414
            DDDR RR++G+PSQY+ + +    EP  FPG +T+N+  +Y+       WEN+VT+RS++Y+L+YDV+GYM+LI+P+PLLMIVS  DT TPTD+AL+ F     PK+L++I +DHY +Y+E FD TS+ ARDFF  +L
Sbjct:  160 DDDRARRMKGEPSQYVPVTSDKDGEPCAFPGRRTHNYFDKYVKSVPGMKWENKVTIRSLEYLLDYDVTGYMELIAPSPLLMIVSNNDTSTPTDLALEMFQRAREPKELYVIKADHYASYLEGFDGTSAAARDFFVKHL 297          
BLAST of mRNA_P-wetherbeei_contig20674.1.1 vs. uniprot
Match: UPI000308EBE8 (alpha/beta fold hydrolase n=4 Tax=Nocardia TaxID=1817 RepID=UPI000308EBE8)

HSP 1 Score: 117 bits (294), Expect = 1.420e-29
Identity = 60/137 (43.80%), Postives = 83/137 (60.58%), Query Frame = 1
Query:    7 DRQRRVEGKPSQYMKMCTLDPTEPHLFPGDQTYNFIHRYIGKGKK-STWENRVTLRSIDYMLEYDVSGYMKLISPTPLLMIVSEFDTCTPTDIALDHFNMVPGPKQLHIIDSDHYEAYVEKFDETSSVARDFFCANL 414
            DRQ R  GKP Q +K  + DPTE    PG + YN++   +  G +  TW N VTL S+D    Y    +++ +SPTPLLM++++ DT TP+DIAL  +     PKQL ++   H+  Y E+F+  SSVARDF  ANL
Sbjct:  161 DRQARASGKPHQMIKAASDDPTELVAMPGIEVYNWL---MANGPQIPTWRNEVTLSSVDKFQSYAPEAFLRRVSPTPLLMVIADQDTLTPSDIALQSYAEALEPKQLTLVPGPHFAVYEEQFELASSVARDFLLANL 294          
BLAST of mRNA_P-wetherbeei_contig20674.1.1 vs. uniprot
Match: A0A846X7P5_9NOCA (Alpha/beta hydrolase n=7 Tax=Nocardia TaxID=1817 RepID=A0A846X7P5_9NOCA)

HSP 1 Score: 111 bits (278), Expect = 3.350e-27
Identity = 57/137 (41.61%), Postives = 80/137 (58.39%), Query Frame = 1
Query:    7 DRQRRVEGKPSQYMKMCTLDPTEPHLFPGDQTYNFIHRYIGKGKK-STWENRVTLRSIDYMLEYDVSGYMKLISPTPLLMIVSEFDTCTPTDIALDHFNMVPGPKQLHIIDSDHYEAYVEKFDETSSVARDFFCANL 414
            DR  R  G+P Q +K  + DPTE    PG + Y ++   +  G +  TW N VTL SID    Y    +++ +SPTPLLM+++E DT TP+DIAL  +     PKQL ++   H+  Y E+FD+ SS ARDF   +L
Sbjct:  161 DRSARAAGEPHQTIKAASDDPTELVAMPGSEVYEWL---MANGPQIPTWRNEVTLSSIDKFQGYAPEAFLRRVSPTPLLMVIAEGDTLTPSDIALQSYAEALEPKQLALVPGGHFAVYGERFDQASSAARDFLLTHL 294          
BLAST of mRNA_P-wetherbeei_contig20674.1.1 vs. uniprot
Match: A0A7G1KXA7_9NOCA (AB hydrolase-1 domain-containing protein n=3 Tax=Nocardia TaxID=1817 RepID=A0A7G1KXA7_9NOCA)

HSP 1 Score: 110 bits (274), Expect = 1.300e-26
Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    7 DRQRRVEGKPSQYMKMCTLDPTEPHLFPGDQTYNFIHRYIGKGKK-STWENRVTLRSIDYMLEYDVSGYMKLISPTPLLMIVSEFDTCTPTDIALDHFNMVPGPKQLHIIDSDHYEAYVEKFDETSSVARDFFCANL 414
            DR  R  GKP Q +K  + DP +    PG + Y ++   +  G +  TW N VTL S+D    Y    +++ ISPTPLLM+V+E DT TPTDIAL  +     PKQL ++   H+  Y ++FD+ S+ ARDF   +L
Sbjct:  162 DRLARAAGKPHQTIKAASDDPADLVAMPGTEVYEWL---MANGPQIPTWRNEVTLSSVDKFQSYAPEAFLRRISPTPLLMVVAEHDTLTPTDIALAGYAEALEPKQLELVPGGHFAVYEQRFDQASAAARDFLLTHL 295          
BLAST of mRNA_P-wetherbeei_contig20674.1.1 vs. uniprot
Match: UPI0002D8D609 (alpha/beta fold hydrolase n=1 Tax=Nocardia araoensis TaxID=228600 RepID=UPI0002D8D609)

HSP 1 Score: 108 bits (269), Expect = 6.970e-26
Identity = 56/137 (40.88%), Postives = 78/137 (56.93%), Query Frame = 1
Query:    7 DRQRRVEGKPSQYMKMCTLDPTEPHLFPGDQTYNFIHRYIGKGKK-STWENRVTLRSIDYMLEYDVSGYMKLISPTPLLMIVSEFDTCTPTDIALDHFNMVPGPKQLHIIDSDHYEAYVEKFDETSSVARDFFCANL 414
            DR  R  GKP Q +K  + DP +    PGD+ Y ++   +  G +  TW N VTL S+D +  Y    +++ +SPTPLLMIV+  DT TPTDIAL  +     PKQL ++   H+  Y E+FD+ SS A +F    L
Sbjct:  161 DRLARAAGKPHQMIKSASDDPADLVAMPGDEVYEWL---MANGPRIPTWRNEVTLSSVDKLQSYAPEAFLRRVSPTPLLMIVANDDTLTPTDIALTSYADALEPKQLELLPGGHFAVYGERFDQASSAACNFLLTQL 294          
BLAST of mRNA_P-wetherbeei_contig20674.1.1 vs. uniprot
Match: A0A1C8ZVX1_9CREN (Acetylxylan esterase n=7 Tax=unclassified Sulfolobus TaxID=2641160 RepID=A0A1C8ZVX1_9CREN)

HSP 1 Score: 107 bits (268), Expect = 1.260e-25
Identity = 53/137 (38.69%), Postives = 82/137 (59.85%), Query Frame = 1
Query:    4 DDRQRRVEGKPSQYMKMCTLDPTEPHLFPGDQTYNFIHRYIGKGKKSTWENRVTLRSIDYMLEYDVSGYMKLISPTPLLMIVSEFDTCTPTDIALDHFNMVPGPKQLHIIDSDHYEAYVEKFDETSSVARDFFCANL 414
            +D +RR++G+    + +    P E    P   +Y +      K +   W N VTLRS++Y+  Y+   Y+K +SP P+LMIV+E D  TPTD+AL+ FNM   PK+L I+   H++AY + F+ +S +ARDFF  +L
Sbjct:  172 EDYERRIKGEKPLTIPVVCKSPPETCALPTPDSYEWFTE-TAKKRAPNWRNEVTLRSVEYLSMYEPITYVKQVSPKPILMIVAESDILTPTDLALEAFNMALMPKELEILKGGHFDAYTKGFEISSRLARDFFLQHL 307          
BLAST of mRNA_P-wetherbeei_contig20674.1.1 vs. uniprot
Match: A0A1W0BBH6_9NOCA (Hydrolase_4 domain-containing protein n=3 Tax=Nocardia TaxID=1817 RepID=A0A1W0BBH6_9NOCA)

HSP 1 Score: 106 bits (264), Expect = 3.790e-25
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 1
Query:    7 DRQRRVEGKPSQYMKMCTLDPTEPHLFPGDQTYNFIHRYIGKGKK-STWENRVTLRSIDYMLEYDVSGYMKLISPTPLLMIVSEFDTCTPTDIALDHFNMVPGPKQLHIIDSDHYEAYVEKFDETSSVARDFFCANL 414
            DR  R+ GKP + +K  + DPTE    PG + Y ++   +  G +  TW N VTL S+D    Y    ++  +SPTPLLM+V+E DT TPT++AL  +     PKQL +I   H+  Y E+F+  S+VAR+F  + L
Sbjct:  161 DRSGRLAGKPHETIKAASNDPTEMVAMPGLEVYEWL---MANGPQIPTWRNEVTLSSVDKFQSYAPEAFVSRVSPTPLLMVVAEQDTLTPTEVALRSYAEALEPKQLALIPGGHFAVYGEQFERASTVAREFLLSRL 294          
BLAST of mRNA_P-wetherbeei_contig20674.1.1 vs. uniprot
Match: UPI000308C33C (alpha/beta fold hydrolase n=1 Tax=Nocardia paucivorans TaxID=114259 RepID=UPI000308C33C)

HSP 1 Score: 105 bits (263), Expect = 5.320e-25
Identity = 55/137 (40.15%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    7 DRQRRVEGKPSQYMKMCTLDPTEPHLFPGDQTYNFIHRYIGKGKK-STWENRVTLRSIDYMLEYDVSGYMKLISPTPLLMIVSEFDTCTPTDIALDHFNMVPGPKQLHIIDSDHYEAYVEKFDETSSVARDFFCANL 414
            DR  R+ GKP + +K  + DPTE    PG + Y ++   +  G +  TW N VTL S+D    Y    ++  ++PTPLLM+V+E DT TPT+IAL  +     PKQL +I   H+  Y E+F+  ++VARDF    L
Sbjct:  161 DRATRLAGKPHETIKAASDDPTEMVAMPGIEVYEWL---MANGPQVPTWRNEVTLSSVDKFQSYAPEAFISRVAPTPLLMVVAEQDTLTPTEIALRSYAEALEPKQLALIPGGHFAVYEEQFERAATVARDFLVGRL 294          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20674.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A523P6Y8_9PROT2.610e-6065.22Alpha/beta hydrolase n=1 Tax=Proteobacteria bacter... [more]
A0A1Z9UKL0_9GAMM2.740e-5763.64Peptidase_S15 domain-containing protein n=3 Tax=Ga... [more]
A0A4S3K7N0_9GAMM1.540e-4552.17Peptidase_S15 domain-containing protein n=1 Tax=Pa... [more]
UPI000308EBE81.420e-2943.80alpha/beta fold hydrolase n=4 Tax=Nocardia TaxID=1... [more]
A0A846X7P5_9NOCA3.350e-2741.61Alpha/beta hydrolase n=7 Tax=Nocardia TaxID=1817 R... [more]
A0A7G1KXA7_9NOCA1.300e-2640.88AB hydrolase-1 domain-containing protein n=3 Tax=N... [more]
UPI0002D8D6096.970e-2640.88alpha/beta fold hydrolase n=1 Tax=Nocardia araoens... [more]
A0A1C8ZVX1_9CREN1.260e-2538.69Acetylxylan esterase n=7 Tax=unclassified Sulfolob... [more]
A0A1W0BBH6_9NOCA3.790e-2540.15Hydrolase_4 domain-containing protein n=3 Tax=Noca... [more]
UPI000308C33C5.320e-2540.15alpha/beta fold hydrolase n=1 Tax=Nocardia paucivo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20674contigP-wetherbeei_contig20674:792..1208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog426716.JOAJ01000001_gene366
PFAMsAXE1,Abhydrolase_1,Abhydrolase_6,Peptidase_S15
Model size417
Max annot lvl201174|Actinobacteria
KEGG koko:K06889
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.28e-26
EggNOG OGsCOG1073@1|root,COG1073@2|Bacteria,2GNB6@201174|Actinobacteria,4FXHV@85025|Nocardiaceae
DescriptionProtein involved in hydrolase activity
Cds size417
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186206.0744655-CDS-P-wetherbeei_contig20674:791..12081683186206.0744655-CDS-P-wetherbeei_contig20674:791..1208Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20674 792..1208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20674.1.1prot_P-wetherbeei_contig20674.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20674 792..1208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20674.1.1

>prot_P-wetherbeei_contig20674.1.1 ID=prot_P-wetherbeei_contig20674.1.1|Name=mRNA_P-wetherbeei_contig20674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
DDDRQRRVEGKPSQYMKMCTLDPTEPHLFPGDQTYNFIHRYIGKGKKSTW
ENRVTLRSIDYMLEYDVSGYMKLISPTPLLMIVSEFDTCTPTDIALDHFN
MVPGPKQLHIIDSDHYEAYVEKFDETSSVARDFFCANL*
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mRNA from alignment at P-wetherbeei_contig20674:792..1208-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20674.1.1 ID=mRNA_P-wetherbeei_contig20674.1.1|Name=mRNA_P-wetherbeei_contig20674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig20674:792..1208- (Phaeothamnion wetherbeei SAG_119_79)
GACGACGACCGTCAGCGCCGCGTCGAGGGCAAGCCCTCGCAGTACATGAA GATGTGCACGCTCGACCCGACCGAACCGCATCTGTTCCCCGGCGATCAGA CCTATAACTTCATCCATCGCTATATCGGCAAGGGCAAGAAGTCGACCTGG GAAAACCGCGTAACCCTGCGCTCCATCGATTACATGCTGGAGTACGACGT GAGTGGCTATATGAAACTCATCAGTCCCACACCGCTGCTGATGATCGTGT CGGAATTCGACACCTGCACGCCGACCGATATCGCACTCGACCACTTCAAC ATGGTGCCGGGTCCGAAGCAGTTGCACATCATCGACTCGGATCACTATGA GGCCTATGTCGAGAAGTTCGACGAGACCAGCAGCGTCGCCCGCGACTTCT TCTGCGCAAATCTGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20674:792..1208-

>mRNA_P-wetherbeei_contig20674.1.1 ID=mRNA_P-wetherbeei_contig20674.1.1|Name=mRNA_P-wetherbeei_contig20674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig20674:792..1208- (Phaeothamnion wetherbeei SAG_119_79)
GACGACGACCGTCAGCGCCGCGTCGAGGGCAAGCCCTCGCAGTACATGAA
GATGTGCACGCTCGACCCGACCGAACCGCATCTGTTCCCCGGCGATCAGA
CCTATAACTTCATCCATCGCTATATCGGCAAGGGCAAGAAGTCGACCTGG
GAAAACCGCGTAACCCTGCGCTCCATCGATTACATGCTGGAGTACGACGT
GAGTGGCTATATGAAACTCATCAGTCCCACACCGCTGCTGATGATCGTGT
CGGAATTCGACACCTGCACGCCGACCGATATCGCACTCGACCACTTCAAC
ATGGTGCCGGGTCCGAAGCAGTTGCACATCATCGACTCGGATCACTATGA
GGCCTATGTCGAGAAGTTCGACGAGACCAGCAGCGTCGCCCGCGACTTCT
TCTGCGCAAATCTGTAG
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