mRNA_P-wetherbeei_contig20637.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20637.1.1
Unique NamemRNA_P-wetherbeei_contig20637.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20637.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20637contigP-wetherbeei_contig20637:659..859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FR29
Model size201
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.6e-11
EggNOG OGs2C5V8@1|root,2SB4P@2759|Eukaryota
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186205.152159-CDS-P-wetherbeei_contig20637:658..8351683186205.152159-CDS-P-wetherbeei_contig20637:658..835Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20637 659..835 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186205.1599844-UTR-P-wetherbeei_contig20637:835..8591683186205.1599844-UTR-P-wetherbeei_contig20637:835..859Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20637 836..859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20637.1.1prot_P-wetherbeei_contig20637.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20637 659..835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20637.1.1

>prot_P-wetherbeei_contig20637.1.1 ID=prot_P-wetherbeei_contig20637.1.1|Name=mRNA_P-wetherbeei_contig20637.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=59bp
MAVAPFNGRPQDPEAADVRRALLERLAADGETPARGEDGRPLWAILQHDG
KVNFGRSG*
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mRNA from alignment at P-wetherbeei_contig20637:659..859-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20637.1.1 ID=mRNA_P-wetherbeei_contig20637.1.1|Name=mRNA_P-wetherbeei_contig20637.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig20637:659..859- (Phaeothamnion wetherbeei SAG_119_79)
TATAATTTGCAGTGGTGGCGCACGATGGCGGTGGCGCCGTTCAACGGGCG
GCCGCAGGACCCTGAGGCGGCGGACGTACGGCGGGCGCTGCTGGAACGAC
TGGCGGCCGACGGCGAGACACCGGCGCGAGGGGAGGACGGCCGCCCGCTC
TGGGCCATCCTGCAGCACGACGGCAAGGTGAATTTCGGCAGATCTGGGTA
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20637:659..859-

>mRNA_P-wetherbeei_contig20637.1.1 ID=mRNA_P-wetherbeei_contig20637.1.1|Name=mRNA_P-wetherbeei_contig20637.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig20637:659..859- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGTGGCGCCGTTCAACGGGCGGCCGCAGGACCCTGAGGCGGCGGA
CGTACGGCGGGCGCTGCTGGAACGACTGGCGGCCGACGGCGAGACACCGG
CGCGAGGGGAGGACGGCCGCCCGCTCTGGGCCATCCTGCAGCACGACGGC
AAGGTGAATTTCGGCAGATCTGGGTAG
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