mRNA_P-wetherbeei_contig20636.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20636.1.1
Unique NamemRNA_P-wetherbeei_contig20636.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20636.1.1 vs. uniprot
Match: A0A0U9HKN3_KLENI (BED-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HKN3_KLENI)

HSP 1 Score: 55.1 bits (131), Expect = 9.380e-5
Identity = 30/92 (32.61%), Postives = 55/92 (59.78%), Query Frame = 3 
Query:  549 ELIKLIPQMRAYRSGVAPFDVTCEGRGRSAAVHAWWIQIEQSPGGDIISKLAIVLLDVVSHAAAPERTFSLLGWLQSERRNRI---TLRLWA 815
            E+ +L+ +M  Y++G  PF +       +  +  WW Q  ++   + ++ LA+++ D+V HA   ER FS++GW+Q+++RNR+   TL L A
Sbjct:  420 EVKQLMHEMVMYKAGEGPFGLVIAPE--TFDLRLWW-QTVRNKQYNTLAALALIIADIVPHAGDIERVFSMMGWMQNDKRNRLGTGTLELMA 508
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20636.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0U9HKN3_KLENI9.380e-532.61BED-type domain-containing protein n=1 Tax=Klebsor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20636contigP-wetherbeei_contig20636:155..1134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog588596.U9SZ13
PFAMsDUF659
Model size980
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.14e-05
EggNOG OGs2E1UA@1|root,2S94A@2759|Eukaryota,3A9M8@33154|Opisthokonta,3P86N@4751|Fungi
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186205.1146085-UTR-P-wetherbeei_contig20636:154..6751683186205.1146085-UTR-P-wetherbeei_contig20636:154..675Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20636 155..675 +
1683186205.129779-UTR-P-wetherbeei_contig20636:975..11341683186205.129779-UTR-P-wetherbeei_contig20636:975..1134Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20636 976..1134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186205.1225638-CDS-P-wetherbeei_contig20636:675..9751683186205.1225638-CDS-P-wetherbeei_contig20636:675..975Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20636 676..975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20636.1.1prot_P-wetherbeei_contig20636.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20636 676..975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20636.1.1

>prot_P-wetherbeei_contig20636.1.1 ID=prot_P-wetherbeei_contig20636.1.1|Name=mRNA_P-wetherbeei_contig20636.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
MHSRRLGAQELIKLIPQMRAYRSGVAPFDVTCEGRGRSAAVHAWWIQIEQ
SPGGDIISKLAIVLLDVVSHAAAPERTFSLLGWLQSERRNRITLRLWAL*
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mRNA from alignment at P-wetherbeei_contig20636:155..1134+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20636.1.1 ID=mRNA_P-wetherbeei_contig20636.1.1|Name=mRNA_P-wetherbeei_contig20636.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=980bp|location=Sequence derived from alignment at P-wetherbeei_contig20636:155..1134+ (Phaeothamnion wetherbeei SAG_119_79)
TGGCATGACTTCTGGCGTCAGCTCCGTGAGTTTCTCGAGCTGCTGTTGCC
CATTAGCAAGGTCATCATGATGGTGCAGTCCGATGAGTGCACGCTCGCCG
ACATCACGTGCTTCTGGCTCTACCTCGCGAAGGACCTGTGGGCTCTATGG
CTGCATCCAAGCTGGCTGCTGAGTACATCTCGCACGCGGCGGCTCAGTAC
GTCCGGCGCGTGCAGGCCCTCCACCTGGACCTGCACCGGCTGGCGCTCTT
CCTAGATCCAACTTATAAGCTGGTCGGCGCCGGTGGTGGTGATGAAACCA
AGTTCAAGGCCGTTGCTGATGCAGTAAGTGAGTTTGTTCTTACTTGACTT
CTCCTGATCCTACTTGACGCTTTGCCTTGATCGATCAGTTTTCACGTTTT
GCTTTGTGTTTCACTTCTGTCGGACAGATACAATCCGCACTTTCCTCGCT
TGTTGCGTCTGCTGCGTATACCTGCCTGTTGTTCGTCTCTTGCTGCTTTT
GCTTTGTAGGCTGCGAGTGTCATGCACAGCCGCCGTCTCGGGGCGCAGGA
ATTGATCAAGCTTATTCCGCAGATGCGGGCCTACCGTTCGGGCGTTGCGC
CATTTGACGTGACATGCGAGGGCCGCGGCCGTAGTGCTGCGGTGCATGCT
TGGTGGATCCAGATCGAACAATCTCCCGGAGGCGACATCATTTCCAAGCT
TGCCATCGTGCTGCTGGATGTGGTCTCCCATGCTGCCGCCCCGGAGCGCA
CCTTTAGTTTGCTGGGCTGGCTGCAGTCGGAGCGCCGCAACCGGATAACG
TTGCGACTATGGGCGCTCTAGCGGCCATCAAGGTGCATCACCTTCAGGGA
GAGGCCCCCCACCTCCTGGAAAGGCTCGGGATAAGCTGCTCGCCATCCAA
GAAGGCGAGGACGTTGGCGGCGGCGGCATCACCTCACGATGCCGTGGTTC
TCGACAGTGACGACGAGGAGGGCAGAGAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20636:155..1134+

>mRNA_P-wetherbeei_contig20636.1.1 ID=mRNA_P-wetherbeei_contig20636.1.1|Name=mRNA_P-wetherbeei_contig20636.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig20636:155..1134+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACAGCCGCCGTCTCGGGGCGCAGGAATTGATCAAGCTTATTCCGCA
GATGCGGGCCTACCGTTCGGGCGTTGCGCCATTTGACGTGACATGCGAGG
GCCGCGGCCGTAGTGCTGCGGTGCATGCTTGGTGGATCCAGATCGAACAA
TCTCCCGGAGGCGACATCATTTCCAAGCTTGCCATCGTGCTGCTGGATGT
GGTCTCCCATGCTGCCGCCCCGGAGCGCACCTTTAGTTTGCTGGGCTGGC
TGCAGTCGGAGCGCCGCAACCGGATAACGTTGCGACTATGGGCGCTCTAG
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