mRNA_P-wetherbeei_contig2063.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2063.2.2
Unique NamemRNA_P-wetherbeei_contig2063.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2063.2.2 vs. uniprot
Match: A0A835YRM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM7_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.320e-37
Identity = 72/116 (62.07%), Postives = 91/116 (78.45%), Query Frame = 2
Query:  560 VTELRKALPEGTTARVVKNKLMRIAAADT-QFKAVEGDLTKGENMWFFVQDDLKGSLELAKKFAKDINKMDTHLPRYGVIDGGAVDAEAIEKLSQLPSKKELYQRIASSIKAVPTK 904
            VT++RK LP GT ARVVKNKLMR+A     Q++AV GD+TKGENMWFFV+DDL  S+ +AK F K +NK DTH P++GV++G A+DA  +E +S LPSK ELY+RIA  +KAVPTK
Sbjct:   83 VTDMRKKLPAGTKARVVKNKLMRLAVEGAPQWEAVVGDMTKGENMWFFVEDDLSESITVAKDFIKVVNKKDTHAPKFGVLEGKALDAAGVEAISNLPSKTELYRRIAVGVKAVPTK 198          
BLAST of mRNA_P-wetherbeei_contig2063.2.2 vs. uniprot
Match: A0A448Z550_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z550_9STRA)

HSP 1 Score: 112 bits (279), Expect = 6.780e-25
Identity = 54/112 (48.21%), Postives = 74/112 (66.07%), Query Frame = 2
Query:  569 LRKALPEGTTARVVKNKLMRIAAADTQFKAVEGDLTKGENMWFFVQDDLKGSLELAKKFAKDINKMDTHLPRYGVIDGGAVDAEAIEKLSQLPSKKELYQRIASSIKAVPTK 904
            LR+++PEGTT  VVKN LM  A  DT+F+     L KG NMWFF+++D+  S++    F K+  K +TH    GV++G   DA+ +E + +LPSKKELY +IA  I AVPTK
Sbjct:   80 LRRSMPEGTTISVVKNTLMNRAVKDTEFEEAASSLLKGANMWFFIEEDIGASIKAWNAFTKETGKKETHGIIGGVVEGNNYDAKGVEAIGKLPSKKELYAKIAGGINAVPTK 191          
BLAST of mRNA_P-wetherbeei_contig2063.2.2 vs. uniprot
Match: A0A7S4EQC8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EQC8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.220e-24
Identity = 56/125 (44.80%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  539 LAAGRRQVTE---LRKALPEGTTARVVKNKLMRIAAADTQFKAVEGDLTKGENMWFFVQDDLKGSLELAKKFAKDINKMDTHLPRYGVIDGGAVDAEAIEKLSQLPSKKELYQRIASSIKAVPTK 904
            + AG   V E   LR+++PEGTT  VVKN LMR A   T+++     L KG NMWFF+++D+  S++    F K+  K +TH    G+++G   DA  IE + +LPSKKELY +IA+ + AVPTK
Sbjct:   65 VPAGEVTVAESQTLRRSMPEGTTISVVKNTLMRRATEGTEYEEATAPLLKGPNMWFFIEEDIGASIKAWNAFTKEAAKTETHSINGGIVEGTNYDAAGIEAIGKLPSKKELYAKIAAGVNAVPTK 189          
BLAST of mRNA_P-wetherbeei_contig2063.2.2 vs. uniprot
Match: A0A1Z5K7S4_FISSO (Large subunit ribosomal protein L10 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7S4_FISSO)

HSP 1 Score: 107 bits (266), Expect = 4.280e-23
Identity = 53/116 (45.69%), Postives = 77/116 (66.38%), Query Frame = 2
Query:  557 QVTELRKALPEGTTARVVKNKLMRIAAADTQFKAVEGDLTKGENMWFFVQDDLKGSLELAKKFAKDINKMDTHLPRYGVIDGGAVDAEAIEKLSQLPSKKELYQRIASSIKAVPTK 904
            ++ +LR+++PEGTT +VVKN LM  A   T ++     LT G N+WFF++DD+  +++    F KD  K DTH    GV +G + D + +E + +LPSK+ELY +IA SIKAVPTK
Sbjct:   77 EMQKLRRSMPEGTTVKVVKNTLMERAVEGTDYEVATSLLT-GANLWFFIEDDISATIKAYNGFLKDCGKKDTHPILGGVTEGISYDTKGVEAIGKLPSKQELYAKIAGSIKAVPTK 191          
BLAST of mRNA_P-wetherbeei_contig2063.2.2 vs. uniprot
Match: B7G672_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G672_PHATC)

HSP 1 Score: 105 bits (263), Expect = 4.750e-23
Identity = 53/116 (45.69%), Postives = 76/116 (65.52%), Query Frame = 2
Query:  557 QVTELRKALPEGTTARVVKNKLMRIAAADTQFKAVEGDLTKGENMWFFVQDDLKGSLELAKKFAKDINKMDTHLPRYGVIDGGAVDAEAIEKLSQLPSKKELYQRIASSIKAVPTK 904
            Q   LR+++P GTT ++VKNKLM  A   T + AV   L +G N WFF+++D+ G+L+    F K+  K ++H    GVI+G   DA  +E + +LPSK++LY +IA SIKAVPTK
Sbjct:   43 QTQALRRSMPSGTTVQIVKNKLMARAVEGTDY-AVATSLLQGANAWFFIEEDIGGTLKAYNAFLKNFGKRESHPILGGVIEGNTYDAAGVEAIGKLPSKQDLYAKIAGSIKAVPTK 157          
BLAST of mRNA_P-wetherbeei_contig2063.2.2 vs. uniprot
Match: A0A6V2PHN8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PHN8_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.060e-22
Identity = 56/116 (48.28%), Postives = 77/116 (66.38%), Query Frame = 2
Query:  557 QVTELRKALPEGTTARVVKNKLMRIAAADTQFKAVEGDLTKGENMWFFVQDDLKGSLELAKKFAKDINKMDTHLPRYGVIDGGAVDAEAIEKLSQLPSKKELYQRIASSIKAVPTK 904
            Q   LR+ALPEGTT  VVKN LM+ A   T ++ V G+L KG NMWFFV++D+ GS++    F K+  K ++H+   GVI+G   D+  +  +S+LPSK EL  +IA +I AVPTK
Sbjct:   75 QTQLLRRALPEGTTMSVVKNTLMQRAIEGTDYQ-VAGELLKGPNMWFFVEEDIGGSIKAFNAFTKENGKTESHMVLGGVIEGVVYDSAGVTAISKLPSKLELIAQIAGAINAVPTK 189          
BLAST of mRNA_P-wetherbeei_contig2063.2.2 vs. uniprot
Match: K0STH8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0STH8_THAOC)

HSP 1 Score: 108 bits (269), Expect = 1.880e-22
Identity = 58/116 (50.00%), Postives = 81/116 (69.83%), Query Frame = 2
Query:  557 QVTELRKALPEGTTARVVKNKLMRIAAADTQFKAVEGDLTKGENMWFFVQDDLKGSLELAKKFAKDINKMDTHLPRYGVIDGGAVDAEAIEKLSQLPSKKELYQRIASSIKAVPTK 904
            QV  LR++LPEGTTA+VVKNKLM  A   T+++ V  ++ KG NMWFF+++D+ GS++  KKF KD    ++H    G I+G   D   +E++S+LPSK EL  +IAS I+AVPTK
Sbjct:  197 QVQGLRRSLPEGTTAKVVKNKLMSRAIEGTEYEPVN-EMLKGANMWFFIEEDIGGSVKSWKKFVKDEALAESHSILGGNIEGTNYDTAGVEQISKLPSKIELITQIASRIQAVPTK 311          
BLAST of mRNA_P-wetherbeei_contig2063.2.2 vs. uniprot
Match: A0A7S2ZLQ0_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZLQ0_9RHOD)

HSP 1 Score: 106 bits (264), Expect = 1.930e-22
Identity = 56/118 (47.46%), Postives = 82/118 (69.49%), Query Frame = 2
Query:  554 RQVTELRKALPEGTTARVVKNKLMRIAAADTQFKAVEGDLTKGENMWFFVQD-DLKGSLELAKKFAKDINKMDTHLPRYGVIDGGAVDAEAIEKLSQLPSKKELYQRIASSIKAVPTK 904
            ++V+ELR  +PE + A  VKN L RIA AD+ +  V GDLTKG N+W F ++ D+KG++E  KKF K+  K +T+    GV++    D + +E LS+LPSK++LYQ+IA +I +VPTK
Sbjct:  112 KEVSELRNVIPENSCALAVKNTLFRIAIADSTWD-VAGDLTKGSNLWIFTEEADMKGTVEAIKKFNKEKKKEETNGISGGVMENTLYDGKGVEALSKLPSKQDLYQKIAIAINSVPTK 228          
BLAST of mRNA_P-wetherbeei_contig2063.2.2 vs. uniprot
Match: A0A7S3LDP0_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LDP0_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.670e-22
Identity = 55/116 (47.41%), Postives = 75/116 (64.66%), Query Frame = 2
Query:  557 QVTELRKALPEGTTARVVKNKLMRIAAADTQFKAVEGDLTKGENMWFFVQDDLKGSLELAKKFAKDINKMDTHLPRYGVIDGGAVDAEAIEKLSQLPSKKELYQRIASSIKAVPTK 904
            Q  +LR+++PEGTT +V+KNKLM  A   T +      LT G NMWFFV++D+  +++  K F K+  K DTH    GV+D    DA  ++ +  LPSK+ELY +IA SIKAVPTK
Sbjct:  112 QSQKLRQSMPEGTTVKVIKNKLMARAIEGTDYTEASQMLT-GANMWFFVEEDISATIKAYKAFIKETGKKDTHDIFGGVMDQTYYDASGVDAIGNLPSKQELYAKIAGSIKAVPTK 226          
BLAST of mRNA_P-wetherbeei_contig2063.2.2 vs. uniprot
Match: A0A7S1E238_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E238_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.820e-21
Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = 2
Query:  569 LRKALPEGTTARVVKNKLMRIAAADTQFKAVEGDLTKGENMWFFVQDDLKGSLELAKKFAKDINKMDTHLPRYGVIDGGAVDAEAIEKLSQLPSKKELYQRIASSIKAVPTK 904
            LR++LPEGTTA VVKN LM  A + T ++    +L KG +MWFF++DD+  S++    F K+ + M++H    GVI+    DA+ ++++  LPSK ELY +IA SIKAVPTK
Sbjct:   79 LRRSLPEGTTAAVVKNTLMERAVSGTDYETA-AELLKGPHMWFFIEDDIGASIKAYNGFIKENDLMESHGIIGGVIESTLYDADGVKQIGNLPSKLELYAKIAGSIKAVPTK 189          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2063.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRM7_9STRA1.320e-3762.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A448Z550_9STRA6.780e-2548.21Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4EQC8_9STRA3.220e-2444.80Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1Z5K7S4_FISSO4.280e-2345.69Large subunit ribosomal protein L10 n=2 Tax=Fistul... [more]
B7G672_PHATC4.750e-2345.69Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A6V2PHN8_9STRA1.060e-2248.28Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
K0STH8_THAOC1.880e-2250.00Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2ZLQ0_9RHOD1.930e-2247.46Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S3LDP0_9STRA4.670e-2247.41Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1E238_9STRA1.820e-2147.32Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2063contigP-wetherbeei_contig2063:3718..5665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0STH8
PFAMsRibosomal_L10
Model size1408
Max annot lvl2836|Bacillariophyta
KEGG koko:K02864
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.95e-26
EggNOG OGsCOG0244@1|root,2S56U@2759|Eukaryota,2XBWC@2836|Bacillariophyta
Ec32 ortholog description50S ribosomal protein L10
Ec32 orthologEc-12_005900.1
DescriptionRibosomal protein L10
Cds size549
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186205.019975-UTR-P-wetherbeei_contig2063:3717..40981683186205.019975-UTR-P-wetherbeei_contig2063:3717..4098Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2063 3718..4098 -
1683186205.0616632-UTR-P-wetherbeei_contig2063:5187..56651683186205.0616632-UTR-P-wetherbeei_contig2063:5187..5665Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2063 5188..5665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186205.0390856-CDS-P-wetherbeei_contig2063:4098..44191683186205.0390856-CDS-P-wetherbeei_contig2063:4098..4419Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2063 4099..4419 -
1683186205.050033-CDS-P-wetherbeei_contig2063:4959..51871683186205.050033-CDS-P-wetherbeei_contig2063:4959..5187Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2063 4960..5187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2063.2.2prot_P-wetherbeei_contig2063.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2063 4099..5187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2063.2.2

>prot_P-wetherbeei_contig2063.2.2 ID=prot_P-wetherbeei_contig2063.2.2|Name=mRNA_P-wetherbeei_contig2063.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
MATAMDCNDDGGGCDGCNDGLAAGRRQVTELRKALPEGTTARVVKNKLMR
IAAADTQFKAVEGDLTKGENMWFFVQDDLKGSLELAKKFAKDINKMDTHL
PRYGVIDGGAVDAEAIEKLSQLPSKKELYQRIASSIKAVPTKVAKGINLV
PTKVARAVKLATAPEDGAADGAAAAEEAAAEA*
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mRNA from alignment at P-wetherbeei_contig2063:3718..5665-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2063.2.2 ID=mRNA_P-wetherbeei_contig2063.2.2|Name=mRNA_P-wetherbeei_contig2063.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1948bp|location=Sequence derived from alignment at P-wetherbeei_contig2063:3718..5665- (Phaeothamnion wetherbeei SAG_119_79)
CGACAACTGTGGAGAAGGTGCGGGAGCTGCTGAGCACCGCCACCTTCGTA TTCGCCGTCCAGAGCTCGCGCGTCACCGGAAAGCAGGTATATCAGCTTCC TTCAGATAAGGAAAAGCCTGAGAGAAGTCGACTCGGGAGGCGAACGGGCA TTAGTTTGGTGGTGAAAAGCTCATATTCGAAGCTCAACTGCCGACGTGGG GGCTGCTTCATCTTCATTGCGGCGGTGCTGTGGCCGTTTTCTCTCCACTT CCTACCGGCCATGTTCAATAGCGCCTTCAGAAAGTCTTGTAGAGAGCTAG CTCTCTATTCCCCATTTCTGCTGTTTCTGATCCTTCATTAATTTCGTCGG CCTCTCCTGATGCCTTCGGCGACGGTTCTAACGGCGGCGGCGGCGGCGGC GATGACGACGATGCTAATGGGACCGACGGCGTCATCGGCGTGGTGCTGGT ATCTACGGCGGGGCCGACCTTTTGGCGGATGGCGACGGCAATGGATTGCA ACGACGATGGCGGTGGCTGTGACGGCTGCAATGATGGTCTGGCGGCGGGA CGGCGACAGGTCACTGAGCTGCGAAAGGCGCTGCCGGAGGGAACGACGGC ACGGGTGGTGAAGAACAAGCTGATGCGGATCGCCGCGGCCGATACGCAGT TCAAAGCGGTGGAGGGAGACCTGACTAAGGGGGAGAACATGTGGTTCTTC GTGCAGGTGGGTGATGACAAGCGATATGTATAATGCCAAGGTCGCCCGTG GCACCAGGATGGCATTGCTGTGGTTGTTGGCTTTCGCGCATTCAACTTAT GGTCAGCTCAATTTCTTTTCATTTCGCCGTTTCGGAGGTGCTTTTTCTGA TAAAGGAAGGGTGCTTTCCCATTGCTTCTTGCTATATGGCACTTGTGGAT TGCCGAATGTAGCAATCTATACGACTCTGCTGTCGTTCCCTTATTCTCCT GTAGCTGTGAGTCTTGTACACCGATATAGAATAGTCTAGCTGCCTCGCTC CCCCGTCTCTATCCCCTCTCTCGCTTTTCTATGCTTTGCTCCGACATACC TTTGTTCTCGCTCCCGGTGGGACGGGACTGCGGGTGCTAACCTGGCATTC GATTTTTCCCCTCCTCCCTTGCCGTCCGACCGGACCCCCCGACGGAACGT CGATTGCCGGAACGAACGCCGCCGTAAAACTGACAACTGACGCTGGGCCG ACGAACGGAACACTAAATGGCCGGATGGATGGCCGGATGCTGACAGGATG ACCTGAAGGGGTCGCTGGAGCTAGCCAAGAAGTTCGCCAAGGACATCAAT AAGATGGATACGCATTTACCGCGATACGGCGTCATCGACGGCGGCGCCGT GGACGCCGAGGCCATCGAGAAGCTCAGCCAACTGCCCTCCAAGAAAGAGC TCTACCAGCGGATCGCGTCGTCCATCAAGGCCGTGCCCACTAAGGTGGCC AAGGGCATCAATCTCGTGCCCACCAAGGTGGCGCGCGCCGTCAAGCTGGC GACGGCGCCCGAGGACGGGGCTGCCGATGGCGCGGCGGCGGCGGAGGAGG CGGCGGCGGAAGCGTGAGCGGCGGTGGCGATGGAGGCGGTGTGAGAAGCA GCGTCGGCTTAAGGAGCGGCGACAGTGGCGTGAGAAGCGGCGGCGGCGGG TGGCAGCTGTGGGGTTACAGCGGACTGTGAGCGTGCGAAGCGGGCAGCAG CGGCAGGCAGGCACGTCGAAAAGCCGATTGTTCGAAGCTTTGCGGCGTGC GGCAGCTGTTCCGGCAGGCATGCTGTCGGTGGCAGTGGCTGCGATTTGGG TTGCGGCGCTTCTTTTGAGGCTTGGAGGGGCGCGTGGCGCGCAAGGGTGA CCCTCCAGGGCATTTGGCGCGACCCTATTTGCCTTGCGTGCATCACTCCC GTTGTTTACTTTCCGAATTGGAGCACAGCACGACGTGCGGTATACGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2063:3718..5665-

>mRNA_P-wetherbeei_contig2063.2.2 ID=mRNA_P-wetherbeei_contig2063.2.2|Name=mRNA_P-wetherbeei_contig2063.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig2063:3718..5665- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACGGCAATGGATTGCAACGACGATGGCGGTGGCTGTGACGGCTG
CAATGATGGTCTGGCGGCGGGACGGCGACAGGTCACTGAGCTGCGAAAGG
CGCTGCCGGAGGGAACGACGGCACGGGTGGTGAAGAACAAGCTGATGCGG
ATCGCCGCGGCCGATACGCAGTTCAAAGCGGTGGAGGGAGACCTGACTAA
GGGGGAGAACATGTGGTTCTTCGTGCAGGATGACCTGAAGGGGTCGCTGG
AGCTAGCCAAGAAGTTCGCCAAGGACATCAATAAGATGGATACGCATTTA
CCGCGATACGGCGTCATCGACGGCGGCGCCGTGGACGCCGAGGCCATCGA
GAAGCTCAGCCAACTGCCCTCCAAGAAAGAGCTCTACCAGCGGATCGCGT
CGTCCATCAAGGCCGTGCCCACTAAGGTGGCCAAGGGCATCAATCTCGTG
CCCACCAAGGTGGCGCGCGCCGTCAAGCTGGCGACGGCGCCCGAGGACGG
GGCTGCCGATGGCGCGGCGGCGGCGGAGGAGGCGGCGGCGGAAGCGTGA
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