mRNA_P-wetherbeei_contig20629.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20629.1.1
Unique NamemRNA_P-wetherbeei_contig20629.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20629.1.1 vs. uniprot
Match: A0A7Z9PPN2_9BACT (Long-chain fatty acid--CoA ligase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PPN2_9BACT)

HSP 1 Score: 140 bits (354), Expect = 1.370e-37
Identity = 69/127 (54.33%), Postives = 87/127 (68.50%), Query Frame = 1
Query:    1 ITDRKKDLLVMSNGKNVAPQPIEHRLSASPLIEQAVVIGDAQKFIAALIYPAYPQLQGWLKEQGITDSPAELPGNTKFVEHMQKEVDRCCEGLSHYELVKKIAILPAELSMAAGELTPTLKVKRKVV 381
            ITDRKK+L+V+SNGKNVAP PIE  +  S  IEQ VVIGD + FI+ALI P+Y     W ++ G+   PA++  + K  E + +   + CEG S YE VKKIA+LP ELS   GELTPTLK KR+VV
Sbjct:  252 ITDRKKELIVLSNGKNVAPSPIEQSIKESKYIEQCVVIGDQRNFISALIVPSYEGFAEWCEQNGVDKDPAKMAEDPKVYEFLSEVTKKACEGFSRYEQVKKIAVLPRELSQEHGELTPTLKTKRRVV 378          
BLAST of mRNA_P-wetherbeei_contig20629.1.1 vs. uniprot
Match: A0A355TTI1_9BACT (Long-chain fatty acid--CoA ligase (Fragment) n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TTI1_9BACT)

HSP 1 Score: 136 bits (342), Expect = 2.630e-37
Identity = 64/129 (49.61%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 ITDRKKDLLVMSNGKNVAPQPIEHRLSASPLIEQAVVIGDAQKFIAALIYPAYPQLQGWLKEQGITDSPAELPGNTKFVEHMQKEVDRCCEGLSHYELVKKIAILPAELSMAAGELTPTLKVKRKVVTA 387
            ITDRKK+++V+SNGKNVAP P+E+ +  S  IEQ V++G+ + F+ ALI P + +L+ W +EQG+  S  EL  + K  + + KE+  CC+  S YE V++IAILP EL  + GE+TPTLKVKR++V A
Sbjct:   83 ITDRKKEIIVLSNGKNVAPAPLENAIKGSTWIEQVVIVGNNRSFVGALIVPNFEKLEKWAQEQGLNLSREELVKDVKVEKMLLKEIAECCQSFSAYEKVRRIAILPRELKASEGEITPTLKVKRRIVNA 211          
BLAST of mRNA_P-wetherbeei_contig20629.1.1 vs. uniprot
Match: A0A7X8XKP1_9BURK (Long-chain fatty acid--CoA ligase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XKP1_9BURK)

HSP 1 Score: 140 bits (353), Expect = 3.010e-36
Identity = 72/139 (51.80%), Postives = 94/139 (67.63%), Query Frame = 1
Query:    1 ITDRKKDLLVMSNGKNVAPQPIEHRLSASPLIEQAVVIGDAQKFIAALIYPAYPQLQGWLKEQGITDSPAELPGNTKFVEHMQKEVDRCCEGLSHYELVKKIAILPAELSMAAGELTPTLKVKRKVVTAKNAAAIAALY 417
            ITDRKK+LLV+SNGKNVAPQP+E ++ ASP IEQ VV+GD + F+AAL+ PA+ +L+ W  +QG+    + L    +  + +  EV   C+  S+YE VKKIA+L  EL+M  GELTPTLKVKR VV       I  LY
Sbjct:  471 ITDRKKELLVLSNGKNVAPQPLEQQIKASPWIEQVVVVGDGRNFVAALVVPAFARLEEWAGQQGLPLERSALVREPRVYDQLFAEVQSACQDFSNYEKVKKIAVLSRELTMDQGELTPTLKVKRHVVDKHFRQEIEGLY 609          
BLAST of mRNA_P-wetherbeei_contig20629.1.1 vs. uniprot
Match: A0A7W1GE92_9BACT (AMP-binding protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7W1GE92_9BACT)

HSP 1 Score: 127 bits (318), Expect = 8.220e-34
Identity = 65/140 (46.43%), Postives = 95/140 (67.86%), Query Frame = 1
Query:    1 ITDRKKDLLVMSNGKNVAPQPIEHRLSASPLIEQAVVIGDAQKFIAALIYPAYPQLQGWLKEQGIT-DSPAELPGNTKFVEHMQKEVDRCCEGLSHYELVKKIAILPAELSMAAGELTPTLKVKRKVVTAKNAAAIAALY 417
            ITDRKK+L   S GK VAPQPIE RL  SP + Q V++G+ +KF AALI P + QL+ + + + +   +PA+   + + ++ +Q++VD  C+GLS YE VKK+A+L  E+++  GELTPT+KVKR++V  K    I  LY
Sbjct:   85 ITDRKKELFKTSGGKYVAPQPIEQRLKQSPFVNQVVLVGNGRKFPAALIVPNWEQLRSYAQLKNLDIKTPADFIRHPRIIDVVQRQVDALCDGLSKYERVKKVALLEHEMTIEGGELTPTMKVKRRIVDEKYRDVIDRLY 224          
BLAST of mRNA_P-wetherbeei_contig20629.1.1 vs. uniprot
Match: A0A4Q3X0G6_9BACT (Long-chain fatty acid--CoA ligase n=1 Tax=bacterium TaxID=1869227 RepID=A0A4Q3X0G6_9BACT)

HSP 1 Score: 132 bits (332), Expect = 2.340e-33
Identity = 72/131 (54.96%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    1 ITDRKKDLLVMSNGKNVAPQPIEHRLSASPLIEQAVVIGDAQKFIAALIYPAYPQLQGWLKEQGITDSPAE-LPGNTKFVEHMQKEVDRCCEGLSHYELVKKIAILPAELSMAAGELTPTLKVKRKVVTAK 390
            ITDRKKDL+++ NGKNVAPQPIE RL  S  I QAV++GD+QK ++ALI P +P L  W KEQ +T+   E L  N K V   + EV+     L+ +E V+K A+LP  LS   GELTPTLKVKRKVV  K
Sbjct:  455 ITDRKKDLIILGNGKNVAPQPIEIRLQESRYIAQAVLVGDSQKSVSALIVPNFPALHEWAKEQSLTEPDDEALIKNAKTVALFKAEVEAQTGNLADFEKVRKFALLPEALSAQKGELTPTLKVKRKVVAEK 585          
BLAST of mRNA_P-wetherbeei_contig20629.1.1 vs. uniprot
Match: A0A7C5IIA8_9BACT (Long-chain fatty acid--CoA ligase n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A7C5IIA8_9BACT)

HSP 1 Score: 128 bits (322), Expect = 4.320e-33
Identity = 66/140 (47.14%), Postives = 94/140 (67.14%), Query Frame = 1
Query:    1 ITDRKKDLLVMSNGKNVAPQPIEHRLSASPLIEQAVVIGDAQKFIAALIYPAYPQLQGWLKEQGIT-DSPAELPGNTKFVEHMQKEVDRCCEGLSHYELVKKIAILPAELSMAAGELTPTLKVKRKVVTAKNAAAIAALY 417
            ITDRKKD++V + GKNVAPQPIE+ +  SP I  AVV+G+A+KF++ALI P + +L+ + +E+G+      EL    +    + +E+DR    L+ YE +KKIAILP +  + AGELTPTLKV+RK+V  K    I  +Y
Sbjct:  225 ITDRKKDIIVTAGGKNVAPQPIENTIKTSPYIANAVVVGNARKFVSALIVPDFDKLEVYAREKGLVYKDREELVAKPEVYAFLMQEIDRLTPHLASYEKIKKIAILPRDFDLEAGELTPTLKVRRKIVEEKYKPIIDKIY 364          
BLAST of mRNA_P-wetherbeei_contig20629.1.1 vs. uniprot
Match: A0A524I5Z4_9BACT (Long-chain fatty acid--CoA ligase (Fragment) n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A524I5Z4_9BACT)

HSP 1 Score: 127 bits (320), Expect = 4.570e-33
Identity = 70/140 (50.00%), Postives = 94/140 (67.14%), Query Frame = 1
Query:    1 ITDRKKDLLVMSNGKNVAPQPIEHRLSASPLIEQAVVIGDAQKFIAALIYPAYPQLQGWLKEQGITDSPAE-LPGNTKFVEHMQKEVDRCCEGLSHYELVKKIAILPAELSMAAGELTPTLKVKRKVVTAKNAAAIAALY 417
            ITDRKKDL+V S GKN+APQPIE+ L  SP I   VVIGD ++FIAAL+ P + +LQ + + QGI  S  + L  + + V  ++ EVDR    L+ YE +KKIA+LP +  +  GE+TP+LKV+R  VTA   A I A+Y
Sbjct:  185 ITDRKKDLIVTSGGKNIAPQPIENLLKTSPYIMSGVVIGDRKRFIAALLVPNFEKLQEYAQAQGIAFSSLDDLCRDRRIVGFLKAEVDRATPHLASYERIKKIAVLPRDFEIERGEMTPSLKVRRANVTAAYQALIDAMY 324          
BLAST of mRNA_P-wetherbeei_contig20629.1.1 vs. uniprot
Match: A0A7X7ZI76_9BACT (Long-chain fatty acid--CoA ligase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7X7ZI76_9BACT)

HSP 1 Score: 130 bits (328), Expect = 9.090e-33
Identity = 72/140 (51.43%), Postives = 97/140 (69.29%), Query Frame = 1
Query:    1 ITDRKKDLLVMSNGKNVAPQPIEHRLSASPLIEQAVVIGDAQKFIAALIYPAYPQLQGWLKEQGIT-DSPAELPGNTKFVEHMQKEVDRCCEGLSHYELVKKIAILPAELSMAAGELTPTLKVKRKVVTAKNAAAIAALY 417
            ITDRKKDLLV S GKN+APQPIE+ L +SP I  AVV+GD Q+FIAAL+ P + +L+ + K QGI   +  EL  + + V+ ++ EVDR    L+ YE VKKIA+L  +  +  GE+TP+LKV+R  VT++   AI ALY
Sbjct:  451 ITDRKKDLLVTSGGKNIAPQPIENLLKSSPYITNAVVLGDRQRFIAALVVPDFDKLRDYAKSQGIPFGTIEELCKDRRVVDFLKSEVDRATPQLASYERVKKIAVLHRDFDIERGEITPSLKVRRANVTSEYRDAIDALY 590          
BLAST of mRNA_P-wetherbeei_contig20629.1.1 vs. uniprot
Match: A0A7V0T8E9_9BACT (Long-chain fatty acid--CoA ligase n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7V0T8E9_9BACT)

HSP 1 Score: 123 bits (308), Expect = 1.130e-32
Identity = 66/139 (47.48%), Postives = 91/139 (65.47%), Query Frame = 1
Query:    1 ITDRKKDLLVMSNGKNVAPQPIEHRLSASPLIEQAVVIGDAQKFIAALIYPAYPQLQGWLKEQGITDSPAELPGNTKFVEHMQKEVDRCCEGLSHYELVKKIAILPAELSMAAGELTPTLKVKRKVVTAKNAAAIAALY 417
            ITDRKKDL+V + GKN+APQPIE  L+ SP IEQAV+IGD +KF+AALI PAY  L+   KE  ++ +  EL  N+  +  ++ E+    E  S +E VKK A+LP   ++ +GELTPTLK +R+++       I  LY
Sbjct:   59 ITDRKKDLIVTAGGKNIAPQPIEQALTLSPYIEQAVIIGDRRKFLAALIVPAYETLK---KELNLSLTAEELIKNSALIAKIEAELSLRTEKFSRFEQVKKFALLPEPFTIDSGELTPTLKTRRRIIENNYREQIETLY 194          
BLAST of mRNA_P-wetherbeei_contig20629.1.1 vs. uniprot
Match: A0A7R6PGL5_9BACT (Long-chain acyl-CoA synthetase n=1 Tax=Thermotomaculum hydrothermale TaxID=981385 RepID=A0A7R6PGL5_9BACT)

HSP 1 Score: 130 bits (327), Expect = 1.220e-32
Identity = 71/141 (50.35%), Postives = 96/141 (68.09%), Query Frame = 1
Query:    1 ITDRKKDLLVMSNGKNVAPQPIEHRLSASPLIEQAVVIGDAQKFIAALIYPAYPQLQGWLKEQGITDSPAELPGNTKFVEHM-QKEVDRCCEGLSHYELVKKIAILPAELSMAAGELTPTLKVKRKVVTAKNAAAIAALYA 420
            ITDRKK+++V S GKNVAPQPIE+ L AS  I QAV+IGD +K+I+ALI P +  L+ W K+  +  +  E     + V+ + QKEVD+  + L+ YE +KK A+LP EL+   GELTPTLKVKR+V+  K    I +LYA
Sbjct:  460 ITDRKKEIIVTSGGKNVAPQPIENALKASKYITQAVLIGDKRKYISALIVPDFDVLEKWAKQNAVDFTSREDLIEKQLVKDLIQKEVDKVNQDLARYEQIKKFALLPQELTQDGGELTPTLKVKRRVINEKYKDIIDSLYA 600          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20629.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Z9PPN2_9BACT1.370e-3754.33Long-chain fatty acid--CoA ligase n=1 Tax=Phycisph... [more]
A0A355TTI1_9BACT2.630e-3749.61Long-chain fatty acid--CoA ligase (Fragment) n=1 T... [more]
A0A7X8XKP1_9BURK3.010e-3651.80Long-chain fatty acid--CoA ligase n=1 Tax=Burkhold... [more]
A0A7W1GE92_9BACT8.220e-3446.43AMP-binding protein n=1 Tax=Pyrinomonadaceae bacte... [more]
A0A4Q3X0G6_9BACT2.340e-3354.96Long-chain fatty acid--CoA ligase n=1 Tax=bacteriu... [more]
A0A7C5IIA8_9BACT4.320e-3347.14Long-chain fatty acid--CoA ligase n=1 Tax=Candidat... [more]
A0A524I5Z4_9BACT4.570e-3350.00Long-chain fatty acid--CoA ligase (Fragment) n=1 T... [more]
A0A7X7ZI76_9BACT9.090e-3351.43Long-chain fatty acid--CoA ligase n=1 Tax=Acidobac... [more]
A0A7V0T8E9_9BACT1.130e-3247.48Long-chain fatty acid--CoA ligase n=1 Tax=Candidat... [more]
A0A7R6PGL5_9BACT1.220e-3250.35Long-chain acyl-CoA synthetase n=1 Tax=Thermotomac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20629contigP-wetherbeei_contig20629:14..436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121957.ATVL01000010_gene523
Preferred namefadD
PFAMsAMP-binding
Model size423
Max annot lvl976|Bacteroidetes
KEGG rclassRC00004,RC00014
KEGG koko:K01897
KEGG TC4.C.1.1
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG ModuleM00086
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.97e-29
EggNOG OGsCOG1022@1|root,COG1022@2|Bacteria,4NEA4@976|Bacteroidetes,47K61@768503|Cytophagia
EC6.2.1.3
DescriptionAMP-binding enzyme
Cds size393
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186204.9761884-UTR-P-wetherbeei_contig20629:13..431683186204.9761884-UTR-P-wetherbeei_contig20629:13..43Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20629 14..43 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186204.9868321-CDS-P-wetherbeei_contig20629:43..4361683186204.9868321-CDS-P-wetherbeei_contig20629:43..436Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20629 44..436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20629.1.1prot_P-wetherbeei_contig20629.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20629 44..436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20629.1.1

>prot_P-wetherbeei_contig20629.1.1 ID=prot_P-wetherbeei_contig20629.1.1|Name=mRNA_P-wetherbeei_contig20629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
MSNGKNVAPQPIEHRLSASPLIEQAVVIGDAQKFIAALIYPAYPQLQGWL
KEQGITDSPAELPGNTKFVEHMQKEVDRCCEGLSHYELVKKIAILPAELS
MAAGELTPTLKVKRKVVTAKNAAAIAALYA*
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mRNA from alignment at P-wetherbeei_contig20629:14..436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20629.1.1 ID=mRNA_P-wetherbeei_contig20629.1.1|Name=mRNA_P-wetherbeei_contig20629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig20629:14..436+ (Phaeothamnion wetherbeei SAG_119_79)
ATCACCGACCGTAAAAAGGATCTGCTGGTGATGTCCAACGGTAAGAACGT TGCGCCTCAGCCCATCGAGCACCGCCTCAGCGCCAGTCCCCTCATCGAGC AGGCCGTCGTGATCGGGGACGCACAGAAGTTTATCGCCGCATTGATCTAC CCGGCCTATCCGCAGCTGCAAGGATGGCTCAAGGAACAGGGCATCACCGA CTCGCCGGCTGAGCTGCCTGGGAATACGAAGTTTGTGGAGCATATGCAGA AGGAGGTCGACCGCTGCTGCGAAGGCTTGAGCCATTATGAGCTCGTCAAA AAGATCGCTATCTTGCCCGCGGAGTTGAGCATGGCGGCTGGCGAACTGAC GCCGACTCTCAAGGTGAAGCGAAAAGTGGTGACCGCCAAGAACGCTGCTG CTATTGCAGCTCTGTACGCCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20629:14..436+

>mRNA_P-wetherbeei_contig20629.1.1 ID=mRNA_P-wetherbeei_contig20629.1.1|Name=mRNA_P-wetherbeei_contig20629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig20629:14..436+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCAACGGTAAGAACGTTGCGCCTCAGCCCATCGAGCACCGCCTCAG
CGCCAGTCCCCTCATCGAGCAGGCCGTCGTGATCGGGGACGCACAGAAGT
TTATCGCCGCATTGATCTACCCGGCCTATCCGCAGCTGCAAGGATGGCTC
AAGGAACAGGGCATCACCGACTCGCCGGCTGAGCTGCCTGGGAATACGAA
GTTTGTGGAGCATATGCAGAAGGAGGTCGACCGCTGCTGCGAAGGCTTGA
GCCATTATGAGCTCGTCAAAAAGATCGCTATCTTGCCCGCGGAGTTGAGC
ATGGCGGCTGGCGAACTGACGCCGACTCTCAAGGTGAAGCGAAAAGTGGT
GACCGCCAAGAACGCTGCTGCTATTGCAGCTCTGTACGCCTAG
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