mRNA_P-wetherbeei_contig2062.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2062.5.1
Unique NamemRNA_P-wetherbeei_contig2062.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2062.5.1 vs. uniprot
Match: A0A2Z6ETQ8_9BURK (HNWD1 protein n=2 Tax=Mycoavidus cysteinexigens TaxID=1553431 RepID=A0A2Z6ETQ8_9BURK)

HSP 1 Score: 77.8 bits (190), Expect = 6.670e-14
Identity = 47/150 (31.33%), Postives = 83/150 (55.33%), Query Frame = 1
Query:    1 GSRIDAAAQIGAFMDSDRRVLLVVGGPGAGKTLLLRQL-----EAHLAADVAALPPVPLFIDLLTLDTAQPPTLAKM-SAAGLSQAEVLQLQRSRRVVFLVDSFDALAPGRLANLFKANRWAEWDCKVVVACRPLFLSHVAAYEELFVPD 432
            G R D  ++   F++SD++V L++G  G+GK+   R L     E +  A+      +P+FI L TL+      L +  S  G S+ ++ QL++SRR +F++D +D +   + A  +  N+  +WD KV+++ RP +L   A+Y+  F P 
Sbjct:  113 GERFDLNSKFNTFLESDKKVFLLLGEAGSGKSTFNRYLARDLWEKYEQANEKKDERIPVFIQLTTLEDPNKNLLTEFFSEEGFSKEQIQQLRQSRRFIFILDGYDEIKHRQRA-FYTDNKLDKWDAKVIISSRPEYLG--ASYQSKFYPS 259          
BLAST of mRNA_P-wetherbeei_contig2062.5.1 vs. uniprot
Match: A0A2Z6EST4_9BURK (NB-ARC domain protein n=2 Tax=Mycoavidus cysteinexigens TaxID=1553431 RepID=A0A2Z6EST4_9BURK)

HSP 1 Score: 76.3 bits (186), Expect = 2.290e-13
Identity = 49/150 (32.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query:    1 GSRIDAAAQIGAFMDSDRRVLLVVGGPGAGKTL----LLRQLEAHLA-ADVAALPPVPLFIDLLTLDTAQPPTLAK-MSAAGLSQAEVLQLQRSRRVVFLVDSFDALAPGRLANLFKANRWAEWDCKVVVACRPLFLSHVAAYEELFVPD 432
            G R D   ++ AF++SD++V L++G  G+GK+     L RQL A+   AD      +P+FI L TL       L +  +  G S+ ++ QL++SRR +F++D +D +   R    +  N+  +WD KV+++ RP +L    +Y+  F P 
Sbjct:  108 GERFDLRHKLNAFLESDKKVFLLLGEAGSGKSTFNRYLARQLWANYELADKKEDERIPVFIQLTTLKDPNENLLTEYFTEEGFSKEQIQQLRQSRRFIFILDGYDEIKH-RQRVFYTDNKLDKWDAKVIISSRPEYLG--PSYQSKFYPS 254          
BLAST of mRNA_P-wetherbeei_contig2062.5.1 vs. uniprot
Match: A0A2Z6ETH2_9BURK (Myosin heavy-chain kinase n=1 Tax=Mycoavidus cysteinexigens TaxID=1553431 RepID=A0A2Z6ETH2_9BURK)

HSP 1 Score: 75.9 bits (185), Expect = 3.190e-13
Identity = 47/145 (32.41%), Postives = 77/145 (53.10%), Query Frame = 1
Query:   13 DAAAQIGAFMDSDRRVLLVVGGPGAGKTLLLRQLEAHLAADV-----AALPPVPLFIDLLTLDTAQPPTLAK-MSAAGLSQAEVLQLQRSRRVVFLVDSFDALAPGRLANLFKANRWAEWDCKVVVACRPLFLSHVAAYEELFVP 429
            D   ++ AF+ SD++VLL++G  G+GK+   R L   L  D      A   P+PLFI L TLD      + + +   GLS+A++  L+  RR +F++D +D +A  R    +  N+   W  +V+++ RP +L     Y+  F P
Sbjct:  655 DLEDKVNAFLQSDKKVLLLLGEGGSGKSTFNRHLARRLWTDYQHTDHAQAQPIPLFIPLATLDNPGKNLIEQYLREQGLSEAQIEALRCERRFIFILDGYDEIAH-RSQAFYAGNKLERWQAQVIISSRPEYLG--TNYQNKFYP 796          
BLAST of mRNA_P-wetherbeei_contig2062.5.1 vs. uniprot
Match: A0A2Z6ETY0_9BURK (WD40 repeat-containing protein n=1 Tax=Mycoavidus cysteinexigens TaxID=1553431 RepID=A0A2Z6ETY0_9BURK)

HSP 1 Score: 74.7 bits (182), Expect = 7.910e-13
Identity = 45/150 (30.00%), Postives = 81/150 (54.00%), Query Frame = 1
Query:    1 GSRIDAAAQIGAFMDSDRRVLLVVGGPGAGKTLLLRQLEAHL-----AADVAALPPVPLFIDLLTLDTAQPPTLAK-MSAAGLSQAEVLQLQRSRRVVFLVDSFDALAPGRLANLFKANRWAEWDCKVVVACRPLFLSHVAAYEELFVPD 432
            G R D  ++   F++SD++V L++G  G+GK+   R L   L      AD      +P+FI L TL+      L +  +  G S+ ++ QL+++RR +F++D +D +   + A  +  N+  +WD KV+++ RP +L    +Y+  F P 
Sbjct:  135 GKRFDLNSKFNTFLESDKKVFLLLGEAGSGKSTFNRSLARDLWKKYEQADRKEDERIPVFIPLTTLEDPNKNLLTEYFTEEGFSKEQIQQLRQNRRFIFILDGYDEIKHRQRA-FYADNKLEKWDAKVIISSRPEYLG--PSYQSKFYPS 281          
BLAST of mRNA_P-wetherbeei_contig2062.5.1 vs. uniprot
Match: A0A2Z6EWB5_9BURK (NB-ARC domain protein n=1 Tax=Mycoavidus cysteinexigens TaxID=1553431 RepID=A0A2Z6EWB5_9BURK)

HSP 1 Score: 74.7 bits (182), Expect = 8.060e-13
Identity = 45/150 (30.00%), Postives = 82/150 (54.67%), Query Frame = 1
Query:    1 GSRIDAAAQIGAFMDSDRRVLLVVGGPGAGKTLLLRQL-----EAHLAADVAALPPVPLFIDLLTLDTAQPPTLAK-MSAAGLSQAEVLQLQRSRRVVFLVDSFDALAPGRLANLFKANRWAEWDCKVVVACRPLFLSHVAAYEELFVPD 432
            G R D ++++ AF++SD++V L++G  G+GK+   R L     E +  AD      +P+FI L TL+      L +  +  G S+ ++ QL++ RR +F++D +D +   + A  +  N+  +W  KV+++ RP +L     Y+  F P 
Sbjct:  615 GERFDLSSKLNAFLESDKKVFLLLGEAGSGKSTFNRYLARDLWEKYEQADSKEDERIPVFIPLTTLEDPNKNLLTEYFTEEGFSKEQIQQLRQKRRFIFILDGYDEIKHRQRA-FYTDNKLDKWGAKVIISSRPEYLGR--NYDSKFYPS 761          
BLAST of mRNA_P-wetherbeei_contig2062.5.1 vs. uniprot
Match: A0A2Z6EUY0_9BURK (WD40 repeat-containing protein n=2 Tax=Mycoavidus cysteinexigens TaxID=1553431 RepID=A0A2Z6EUY0_9BURK)

HSP 1 Score: 74.7 bits (182), Expect = 8.070e-13
Identity = 50/148 (33.78%), Postives = 83/148 (56.08%), Query Frame = 1
Query:    7 RIDAAAQIGAFMDSDRRVLLVVGGPGAGKTLLLRQLEAHLAADV-AALP----PVPLFIDLLTLDTAQPPTLAK-MSAAGLSQAEVLQLQRSRRVVFLVDSFDALAPGRLANLFKANRWAEWDCKVVVACRPLFLSHVAAYEELFVPD 432
            + D  +++ AF+ SD++V L++G  G+GK+   R L   L  D   A P    P+PLFI L TLD +    + + +   GLS A+V  L+++RR +F++D +D LA  + +  F  NR+  W   V+++ RP +L   + Y+  F P 
Sbjct:  675 QFDLESKVRAFLASDKKVFLLLGEAGSGKSTFNRYLAHRLWDDYNKAKPSQERPIPLFIPLSTLDNSSKNLIEQYLEGQGLSTAQVEALRKARRFIFILDGYDELA--QRSRAFD-NRFDRWQAHVIISSRPEYLG--SGYQSKFQPQ 817          
BLAST of mRNA_P-wetherbeei_contig2062.5.1 vs. uniprot
Match: K2B5D0_9BACT (NACHT domain-containing protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=K2B5D0_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.960e-12
Identity = 43/142 (30.28%), Postives = 82/142 (57.75%), Query Frame = 1
Query:   13 DAAAQIGAFMDSDRRVLLVVGGPGAGKTLLLRQLEAHLAADVAALPPVPLFIDL-LTLDTAQPPTLAKMSAAGLSQAEVLQLQRSRRVVFLVDSFDALAPGRL-ANLFKANRWAEWDCKVVVACRPLFL-SHVAAYEELFVP 429
            D   +I  F+ +D++VLL++G  G+GK+   R LE  L  ++     +PLFI+L ++ D  +      + + G +  E+++L+R+++ +F +D++D L   +   NL+  N   +W+ KV+++CR  +L S    Y+E F P
Sbjct:  451 DVETEIRNFLKTDKKVLLMLGDAGSGKSTCGRFLERRLWQEIKDSELLPLFIELPVSKDPIRRVVETYLESKGFNVEEIVELKRTKKFLFFLDAYDELGKEKEDENLYDTNALNDWNAKVIISCRSQYLASKKENYQERFRP 592          
BLAST of mRNA_P-wetherbeei_contig2062.5.1 vs. uniprot
Match: A0A7W1FZH9_9BACT (NACHT domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7W1FZH9_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 3.640e-12
Identity = 42/136 (30.88%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   25 QIGAFMDSDRRVLLVVGGPGAGKTLLLRQLEAHLAADVAALPPVPLFIDLLTLDTAQPPTLAK-MSAAGLSQAEVLQLQRSRRVVFLVDSFDALAPGRLANLFKANRWAEWDCKVVVACRPLFLSHVAAYEELFVP 429
            +I  F+ SDR+VLL++G  GAGK+L  + L   L    ++  P+PL+I L  L       + +     G +  ++  LQ+++  VF++D++D +    L NL+  N+   W  K+++ CR  +L  V  Y+  F P
Sbjct:   61 EINKFLASDRKVLLLLGDSGAGKSLYTQGLVNKLWQTCSSQDPIPLWISLPALKNPVDNLVQEYFKQFGFTDTQINSLQKNQSFVFILDAYDEIRI--LKNLYVTNQLGNWKAKIIMTCRREYLYSVDNYKLYFAP 194          
BLAST of mRNA_P-wetherbeei_contig2062.5.1 vs. uniprot
Match: UPI001CBF7F3C (NACHT domain-containing protein n=1 Tax=Mycoavidus sp. HKI TaxID=2840467 RepID=UPI001CBF7F3C)

HSP 1 Score: 72.8 bits (177), Expect = 3.790e-12
Identity = 45/146 (30.82%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   13 DAAAQIGAFMDSDRRVLLVVGGPGAGKTLLLRQLEAHL-----AADVAALPPVPLFIDLLTLDTAQPPTLAK-MSAAGLSQAEVLQLQRSRRVVFLVDSFDALAPGRLANLFKANRWAEWDCKVVVACRPLFLSHVAAYEELFVPD 432
            D   ++ AF+ S+++V L++G  G+GK+   R L   L      A  +   P+PLFI L TL+ +    + + ++  GLS+A++  L+++RR +F++D +D LA  R    +  NR   W   V+++ RP +L   + Y+  F P 
Sbjct:  665 DLERKVSAFLASEKKVFLLLGEAGSGKSTFNRHLARRLWDDYHKAQSSQERPIPLFIPLSTLEDSSKNLIEQYLAGQGLSKAQIEALRQARRFIFILDGYDELAQ-RSRAFYADNRLDRWQAHVIMSSRPEYLG--SGYQSKFQPQ 807          
BLAST of mRNA_P-wetherbeei_contig2062.5.1 vs. uniprot
Match: A0A2Z6EWR0_9BURK (HNWD3 protein n=2 Tax=Mycoavidus cysteinexigens TaxID=1553431 RepID=A0A2Z6EWR0_9BURK)

HSP 1 Score: 72.4 bits (176), Expect = 4.800e-12
Identity = 46/150 (30.67%), Postives = 80/150 (53.33%), Query Frame = 1
Query:    1 GSRIDAAAQIGAFMDSDRRVLLVVGGPGAGKTLLLRQL-----EAHLAADVAALPPVPLFIDLLTLDTAQPPTLAK-MSAAGLSQAEVLQLQRSRRVVFLVDSFDALAPGRLANLFKANRWAEWDCKVVVACRPLFLSHVAAYEELFVPD 432
            G R D    + AF++SD++V L++G  G+GK+   R L     E++   D      +P+FI L TL+      L +  +  G S  ++ QL++ RR +F++D +D +   + A  +  N+  +WD KVV++ RP +L    +Y+  F P 
Sbjct:   53 GERFDLNGTLKAFLESDKKVFLLLGEAGSGKSTFNRYLARDLWESYELEDRKEDERIPVFIPLTTLEDPNKNLLTEYFTEEGFSIEQIQQLRQKRRFIFILDGYDEIKHRQRA-FYTDNKLDKWDAKVVISSRPEYLG--PSYQSKFYPS 199          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2062.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z6ETQ8_9BURK6.670e-1431.33HNWD1 protein n=2 Tax=Mycoavidus cysteinexigens Ta... [more]
A0A2Z6EST4_9BURK2.290e-1332.67NB-ARC domain protein n=2 Tax=Mycoavidus cysteinex... [more]
A0A2Z6ETH2_9BURK3.190e-1332.41Myosin heavy-chain kinase n=1 Tax=Mycoavidus cyste... [more]
A0A2Z6ETY0_9BURK7.910e-1330.00WD40 repeat-containing protein n=1 Tax=Mycoavidus ... [more]
A0A2Z6EWB5_9BURK8.060e-1330.00NB-ARC domain protein n=1 Tax=Mycoavidus cysteinex... [more]
A0A2Z6EUY0_9BURK8.070e-1333.78WD40 repeat-containing protein n=2 Tax=Mycoavidus ... [more]
K2B5D0_9BACT1.960e-1230.28NACHT domain-containing protein n=1 Tax=uncultured... [more]
A0A7W1FZH9_9BACT3.640e-1230.88NACHT domain-containing protein (Fragment) n=1 Tax... [more]
UPI001CBF7F3C3.790e-1230.82NACHT domain-containing protein n=1 Tax=Mycoavidus... [more]
A0A2Z6EWR0_9BURK4.800e-1230.67HNWD3 protein n=2 Tax=Mycoavidus cysteinexigens Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2062contigP-wetherbeei_contig2062:5169..5858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog946362.XP_004992847.1
PFAMsNACHT,WD40
Model size432
Max annot lvl2759|Eukaryota
KEGG koko:K11797,ko:K16740,ko:K17985
KEGG Pathwayko04137,ko04140,map04137,map04140
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.44e-15
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-16_003050.1
DescriptionWD repeat-containing protein
Cds size432
COG categoryB
BRITEko00000,ko00001,ko03029,ko03036,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186204.8559747-CDS-P-wetherbeei_contig2062:5168..53121683186204.8559747-CDS-P-wetherbeei_contig2062:5168..5312Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2062 5169..5312 +
1683186204.872345-CDS-P-wetherbeei_contig2062:5471..55301683186204.872345-CDS-P-wetherbeei_contig2062:5471..5530Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2062 5472..5530 +
1683186204.8859766-CDS-P-wetherbeei_contig2062:5629..58581683186204.8859766-CDS-P-wetherbeei_contig2062:5629..5858Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2062 5630..5858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2062.5.1prot_P-wetherbeei_contig2062.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2062 5169..5858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2062.5.1

>prot_P-wetherbeei_contig2062.5.1 ID=prot_P-wetherbeei_contig2062.5.1|Name=mRNA_P-wetherbeei_contig2062.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
GSRIDAAAQIGAFMDSDRRVLLVVGGPGAGKTLLLRQLEAHLAADVAALP
PVPLFIDLLTLDTAQPPTLAKMSAAGLSQAEVLQLQRSRRVVFLVDSFDA
LAPGRLANLFKANRWAEWDCKVVVACRPLFLSHVAAYEELFVPD
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mRNA from alignment at P-wetherbeei_contig2062:5169..5858+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2062.5.1 ID=mRNA_P-wetherbeei_contig2062.5.1|Name=mRNA_P-wetherbeei_contig2062.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=690bp|location=Sequence derived from alignment at P-wetherbeei_contig2062:5169..5858+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCAGGATCGACGCGGCGGCACAGATCGGAGCGTTCATGGATTCGGA CCGCCGCGTTTTGTTGGTTGTGGGCGGCCCCGGAGCCGGAAAGACTCTTT TGCTGCGGCAGCTTGAGGCTCATCTGGCGGCAGATGTGGCTGCGGTGGCG GCAGCGGCGGCAGCAGTGGCGACCTCGGCTGCTGCCAGTGGTTCCGAAAA CCTCCGGCGAGGGAGCAAACGCGGCAGCAGCAACATCATGAAACGCGACA GCACAGTGAGGAGCAGCATCGCCGGCAGTGGCAGCGACGACAGGGCTGAC CAGTTACCGCCGGTACCCCTGTTCATCGACTTGCTGACCCTCGACACCGC CCAGCCACCGACGTCAGCTCCTCCCGTCGCCAGAGCAGTCGCCACGGCGG CTGCGGCGACGGCAACGGCGGCGGCGGGGATAGCGGCAGCGGCGCAAACG GAGCTGGGCAGGCTGGCAAAAATGTCGGCGGCGGGCTTGTCGCAGGCCGA GGTGCTCCAGCTGCAGCGGTCGCGGCGGGTGGTGTTCCTCGTGGACAGCT TCGACGCGTTGGCACCCGGACGGCTGGCGAACCTCTTCAAGGCCAACCGG TGGGCAGAGTGGGACTGCAAGGTCGTCGTGGCGTGCCGCCCGTTATTCCT GTCGCACGTCGCAGCATACGAGGAACTTTTCGTGCCCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2062:5169..5858+

>mRNA_P-wetherbeei_contig2062.5.1 ID=mRNA_P-wetherbeei_contig2062.5.1|Name=mRNA_P-wetherbeei_contig2062.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig2062:5169..5858+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCAGGATCGACGCGGCGGCACAGATCGGAGCGTTCATGGATTCGGA
CCGCCGCGTTTTGTTGGTTGTGGGCGGCCCCGGAGCCGGAAAGACTCTTT
TGCTGCGGCAGCTTGAGGCTCATCTGGCGGCAGATGTGGCTGCGTTACCG
CCGGTACCCCTGTTCATCGACTTGCTGACCCTCGACACCGCCCAGCCACC
GACGCTGGCAAAAATGTCGGCGGCGGGCTTGTCGCAGGCCGAGGTGCTCC
AGCTGCAGCGGTCGCGGCGGGTGGTGTTCCTCGTGGACAGCTTCGACGCG
TTGGCACCCGGACGGCTGGCGAACCTCTTCAAGGCCAACCGGTGGGCAGA
GTGGGACTGCAAGGTCGTCGTGGCGTGCCGCCCGTTATTCCTGTCGCACG
TCGCAGCATACGAGGAACTTTTCGTGCCCGAC
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