mRNA_P-wetherbeei_contig20616.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20616.1.1
Unique NamemRNA_P-wetherbeei_contig20616.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20616.1.1 vs. uniprot
Match: A0A5A8EPJ8_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EPJ8_CAFRO)

HSP 1 Score: 81.3 bits (199), Expect = 3.860e-15
Identity = 61/141 (43.26%), Postives = 77/141 (54.61%), Query Frame = 1 
Query:    4 VVACCDVLLLLPDDLSVDWCRESADAGTAAETAESKALVGVAGLAIAAAASGSRATAAVQPVAGYLQKPTAAAAAAAGALLPHGCVAVDTGLVVFWPAAAAALAALSSNPALAGCTARGVSAGTPPLRLELYSDLLFALSG 426
            VVA  DVLLL+P+   VDW +E A   T       KAL    G+   AA  G  A +   PV  + QK T    AAAGA+ P G V +D+G++ F P A + L  L+    +  CT  GV   T PLR+ELYSDLL A+SG
Sbjct:  149 VVASSDVLLLIPESFRVDWPQEGA---TGLAIPSPKALGPNHGVYHVAALPGDGAASMHVPVERFFQKATVDELAAAGAVSPAGEVLLDSGVIYFSPPATSTLLELAQTAPVLSCTYLGVDTATRPLRVELYSDLLLAMSG 286
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BLAST of mRNA_P-wetherbeei_contig20616.1.1 vs. uniprot
Match: A0A0G4EMB4_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EMB4_VITBC)

HSP 1 Score: 77.4 bits (189), Expect = 8.650e-14
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:  187 VAGYLQKPTAAAAAAAGALLPHGCVAVDTGLVVFWPAAAAALAALSSNPALAGCTARGVSAGTPPLRLELYSDLLFALSG 426
            VA +LQKPT A   + GA LP G +AVDTG+V F       L  ++ +P LAGCT  G+  G PPLR ELYSD++ ALSG
Sbjct:  187 VAQFLQKPTEAVMTSEGASLPPGKIAVDTGVVYFDTTTTQRLVEMAQSPVLAGCTEAGLKEGQPPLRTELYSDIMLALSG 266
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20616.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8EPJ8_CAFRO3.860e-1543.26Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A0G4EMB4_VITBC8.650e-1452.50Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20616contigP-wetherbeei_contig20616:54..590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJB1
PFAMsFucokinase,GHMP_kinases_C,GHMP_kinases_N
Model size426
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K00976,ko:K05305
KEGG ReactionR01951,R03161
KEGG Pathwayko00051,ko00520,ko01100,map00051,map00520,map01100
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009225,GO:0009226,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0042350,GO:0042352,GO:0043094,GO:0043173,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046368,GO:0046483,GO:0047341,GO:0050201,GO:0055086,GO:0070568,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901576
Exons2
Evalue4.7e-12
EggNOG OGsCOG2605@1|root,KOG4644@2759|Eukaryota
EC2.7.1.52,2.7.7.30
DescriptionGDP-L-fucose salvage
Cds size426
COG categoryJ
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186204.6901784-CDS-P-wetherbeei_contig20616:53..2081683186204.6901784-CDS-P-wetherbeei_contig20616:53..208Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20616 54..208 +
1683186204.7106972-CDS-P-wetherbeei_contig20616:319..5901683186204.7106972-CDS-P-wetherbeei_contig20616:319..590Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20616 320..590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20616.1.1prot_P-wetherbeei_contig20616.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20616 54..590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20616.1.1

>prot_P-wetherbeei_contig20616.1.1 ID=prot_P-wetherbeei_contig20616.1.1|Name=mRNA_P-wetherbeei_contig20616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
LVVACCDVLLLLPDDLSVDWCRESADAGTAAETAESKALVGVAGLAIAAA
ASGSRATAAVQPVAGYLQKPTAAAAAAAGALLPHGCVAVDTGLVVFWPAA
AAALAALSSNPALAGCTARGVSAGTPPLRLELYSDLLFALSG
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mRNA from alignment at P-wetherbeei_contig20616:54..590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20616.1.1 ID=mRNA_P-wetherbeei_contig20616.1.1|Name=mRNA_P-wetherbeei_contig20616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig20616:54..590+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGTCGTGGCTTGCTGCGACGTCTTGCTCCTCCTTCCCGACGACCTCTC
TGTTGATTGGTGCAGAGAGAGCGCCGACGCCGGAACCGCCGCAGAGACCG
CCGAAAGTAAAGCTCTGGTCGGGGTTGCCGGGCTGGCCATAGCCGCCGCC
GCGTCGTATGCCCCGCACCACGGGGTCTACATTTGCGCCAGGCAAAAGGC
TGCCAGCCGCATCGGTGGTGGCTGCTGCGGCGGCAGCGGCGGCGGCAGCG
GCGGTGATGATGGCAGCGGGAGCAGGGCTACCGCCGCGGTGCAGCCCGTG
GCGGGATATCTGCAGAAGCCGACAGCAGCGGCAGCGGCTGCTGCGGGGGC
GCTGCTGCCGCACGGATGCGTCGCTGTGGATACGGGGCTCGTGGTGTTTT
GGCCGGCGGCAGCGGCGGCGCTGGCGGCGCTGTCGTCGAACCCGGCGCTC
GCCGGCTGCACCGCCCGCGGCGTCTCCGCCGGGACACCGCCGCTGCGGTT
GGAGCTTTACTCAGACCTGCTCTTTGCCCTCTCTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20616:54..590+

>mRNA_P-wetherbeei_contig20616.1.1 ID=mRNA_P-wetherbeei_contig20616.1.1|Name=mRNA_P-wetherbeei_contig20616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig20616:54..590+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGTCGTGGCTTGCTGCGACGTCTTGCTCCTCCTTCCCGACGACCTCTC
TGTTGATTGGTGCAGAGAGAGCGCCGACGCCGGAACCGCCGCAGAGACCG
CCGAAAGTAAAGCTCTGGTCGGGGTTGCCGGGCTGGCCATAGCCGCCGCC
GCGTCCGGGAGCAGGGCTACCGCCGCGGTGCAGCCCGTGGCGGGATATCT
GCAGAAGCCGACAGCAGCGGCAGCGGCTGCTGCGGGGGCGCTGCTGCCGC
ACGGATGCGTCGCTGTGGATACGGGGCTCGTGGTGTTTTGGCCGGCGGCA
GCGGCGGCGCTGGCGGCGCTGTCGTCGAACCCGGCGCTCGCCGGCTGCAC
CGCCCGCGGCGTCTCCGCCGGGACACCGCCGCTGCGGTTGGAGCTTTACT
CAGACCTGCTCTTTGCCCTCTCTGGC
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