mRNA_P-wetherbeei_contig20615.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20615.1.1
Unique NamemRNA_P-wetherbeei_contig20615.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig20615.1.1 vs. uniprot
Match: A0A7C4TW49_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TW49_9HYPH)

HSP 1 Score: 84.0 bits (206), Expect = 1.740e-19
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   46 WPG-GPDPYAYSYQRPGYYPSYNSDMWVPRKQMLARSKYPLRIPEYYSSWGYPLGC 210
            W G GPDPYAY Y+ PGYYP +NS  W P ++M  R +YPL +PEYYSSWGYPL C
Sbjct:   35 WRGDGPDPYAYYYEPPGYYPYFNSGQWRPAREMRGRYRYPLWLPEYYSSWGYPLPC 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20615.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7C4TW49_9HYPH1.740e-1964.29Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20615contigP-wetherbeei_contig20615:306..518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size213
Hectar predicted targeting categoryother localisation
Exons1
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186204.6609251-CDS-P-wetherbeei_contig20615:305..5181683186204.6609251-CDS-P-wetherbeei_contig20615:305..518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20615 306..518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20615.1.1prot_P-wetherbeei_contig20615.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20615 306..518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20615.1.1

>prot_P-wetherbeei_contig20615.1.1 ID=prot_P-wetherbeei_contig20615.1.1|Name=mRNA_P-wetherbeei_contig20615.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
YNPRHLVAYRYVRGPWPGGPDPYAYSYQRPGYYPSYNSDMWVPRKQMLAR
SKYPLRIPEYYSSWGYPLGCK
back to top

mRNA from alignment at P-wetherbeei_contig20615:306..518-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20615.1.1 ID=mRNA_P-wetherbeei_contig20615.1.1|Name=mRNA_P-wetherbeei_contig20615.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig20615:306..518- (Phaeothamnion wetherbeei SAG_119_79)
TACAATCCGCGCCACCTGGTCGCTTATCGATACGTGCGCGGCCCCTGGCC
GGGCGGTCCCGACCCCTACGCCTATAGCTACCAGCGTCCTGGCTACTACC
CCTCTTACAATTCCGATATGTGGGTACCGCGCAAGCAGATGCTCGCCCGC
TCCAAGTACCCGCTGCGGATTCCCGAATATTACTCGTCGTGGGGATATCC
GCTCGGCTGCAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20615:306..518-

>mRNA_P-wetherbeei_contig20615.1.1 ID=mRNA_P-wetherbeei_contig20615.1.1|Name=mRNA_P-wetherbeei_contig20615.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig20615:306..518- (Phaeothamnion wetherbeei SAG_119_79)
TACAATCCGCGCCACCTGGTCGCTTATCGATACGTGCGCGGCCCCTGGCC
GGGCGGTCCCGACCCCTACGCCTATAGCTACCAGCGTCCTGGCTACTACC
CCTCTTACAATTCCGATATGTGGGTACCGCGCAAGCAGATGCTCGCCCGC
TCCAAGTACCCGCTGCGGATTCCCGAATATTACTCGTCGTGGGGATATCC
GCTCGGCTGCAAG
back to top