mRNA_P-wetherbeei_contig20602.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20602.1.1
Unique NamemRNA_P-wetherbeei_contig20602.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20602.1.1 vs. uniprot
Match: A0A7X8XJU2_9BURK (Recombination protein RecR n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XJU2_9BURK)

HSP 1 Score: 231 bits (588), Expect = 3.570e-74
Identity = 116/188 (61.70%), Postives = 144/188 (76.60%), Query Frame = 1
Query:    7 ERLVAALQRMPTIGPKSAQRLAYHLMQCPPGQAEELADALLEMRRTVRNCALCHNFTDGEYCALCSDESRDETTLCVVGLPRDVSAIERTREFRGRYHVLGGLINPLEGIGPDQVRTRELLARLEREPIQELVLATDPTVAGEATALYLHRQLKDR-FKITRLALGIPLGTDLEYADEVTLGRAFRHR 567
            ERLV  LQR+PT+GPK+A RLA+HL+  P  Q + LA +LL+++  +R C+ C + +D E CA+C D  RD + LCVV   RD+ A+ERTREFRG YHVLGGLI+PL+GIGP ++R + LL RLE E   ELVLAT+PTVAGEATALYL R L  R  +ITRLALG+P+G+DLEYADEVTLGRAF  R
Sbjct:    8 ERLVEELQRLPTVGPKTALRLAFHLLSAPDAQVQALAQSLLDVKSKLRTCSRCGHLSDKELCAVCRDPRRDTSVLCVVATARDLMAVERTREFRGLYHVLGGLISPLDGIGPSELRIQALLDRLEVEKPGELVLATNPTVAGEATALYLFRLLSARNLRITRLALGLPVGSDLEYADEVTLGRAFAGR 195          
BLAST of mRNA_P-wetherbeei_contig20602.1.1 vs. uniprot
Match: UPI001D01A2F5 (recombination mediator RecR n=1 Tax=Phycicoccus mangrovi TaxID=2840470 RepID=UPI001D01A2F5)

HSP 1 Score: 224 bits (572), Expect = 5.500e-72
Identity = 108/183 (59.02%), Postives = 140/183 (76.50%), Query Frame = 1
Query:   34 MPTIGPKSAQRLAYHLMQCPPGQAEELADALLEMRRTVRNCALCHNFTDGEYCALCSDESRDETTLCVVGLPRDVSAIERTREFRGRYHVLGGLINPLEGIGPDQVRTRELLARLEREPIQELVLATDPTVAGEATALYLHRQLKDRF--KITRLALGIPLGTDLEYADEVTLGRAFRHRQIL 576
            MP +GPKSAQR+A+HL+Q  P   E LA AL E++  VR CA+C N  +GE C +C+D  RD++++CVV  P+DV AIERTREFRGRYHVLGG I+P++GIGP+ +R RELLARL    + E+++ATDP + GEATA YL R L+D    ++TRLA G+P+G DLEYADEVTLGRAF  R++L
Sbjct:    1 MPGVGPKSAQRIAFHLLQADPADVERLAHALSEVKARVRFCAVCFNVAEGERCRICADPRRDDSSICVVEEPKDVVAIERTREFRGRYHVLGGAISPIDGIGPEDLRVRELLARLGDGVVTEVIIATDPNLEGEATASYLSRMLRDIGVQRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLL 183          
BLAST of mRNA_P-wetherbeei_contig20602.1.1 vs. uniprot
Match: A0A2N3YL60_9MICO (Recombination protein RecR n=7 Tax=Intrasporangiaceae TaxID=85021 RepID=A0A2N3YL60_9MICO)

HSP 1 Score: 224 bits (571), Expect = 1.280e-71
Identity = 108/190 (56.84%), Postives = 140/190 (73.68%), Query Frame = 1
Query:   13 LVAALQRMPTIGPKSAQRLAYHLMQCPPGQAEELADALLEMRRTVRNCALCHNFTDGEYCALCSDESRDETTLCVVGLPRDVSAIERTREFRGRYHVLGGLINPLEGIGPDQVRTRELLARLEREPIQELVLATDPTVAGEATALYLHRQLKDRF--KITRLALGIPLGTDLEYADEVTLGRAFRHRQIL 576
            L+  L R+P +GPKSAQR+A+HL+Q  P   E LA AL E++  VR C +C N ++ E C +CSD+ RD T +CVV  P+DV AIERTREFRGRYHVLGG I+P++GIGP  ++ RELL RL    + E+++ATDP + GEATA YL R L+D    ++TRLA G+P+G DLEYADEVTLGRAF  R++L
Sbjct:    9 LIDELGRLPGVGPKSAQRIAFHLLQADPADVERLAHALTEVKARVRFCEVCFNVSEAERCRICSDDRRDRTAICVVEEPKDVVAIERTREFRGRYHVLGGAISPIDGIGPQDLKVRELLTRLADGTVTEVIIATDPNLEGEATASYLSRMLRDVGVQRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLL 198          
BLAST of mRNA_P-wetherbeei_contig20602.1.1 vs. uniprot
Match: RECR_STRCO (Recombination protein RecR n=200 Tax=Actinomycetia TaxID=1760 RepID=RECR_STRCO)

HSP 1 Score: 223 bits (568), Expect = 3.530e-71
Identity = 109/189 (57.67%), Postives = 137/189 (72.49%), Query Frame = 1
Query:   13 LVAALQRMPTIGPKSAQRLAYHLMQCPPGQAEELADALLEMRRTVRNCALCHNFTDGEYCALCSDESRDETTLCVVGLPRDVSAIERTREFRGRYHVLGGLINPLEGIGPDQVRTRELLARLEREPIQELVLATDPTVAGEATALYLHRQLKDR-FKITRLALGIPLGTDLEYADEVTLGRAFRHRQIL 576
            L+  L R+P +GPKSAQR+A+H++Q  P     LA AL+E++  VR CA C N    E C +C D  RD + +CVV  P+DV AIERTREFRGRYHVLGG I+P++G+GPD +R RELLARL    + EL+LATDP + GEATA YL R +K    K+TRLA G+P+G DLEYADEVTLGRAF  R++L
Sbjct:    9 LIDELGRLPGVGPKSAQRIAFHILQAEPVDVRRLAQALMEVKAKVRFCATCGNVAQEEQCNICRDTRRDPSVICVVEEPKDVVAIERTREFRGRYHVLGGAISPIDGVGPDDLRIRELLARLADGSVTELILATDPNLEGEATATYLARMIKPMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLL 197          
BLAST of mRNA_P-wetherbeei_contig20602.1.1 vs. uniprot
Match: K6VK54_9MICO (Recombination protein RecR n=2 Tax=Austwickia TaxID=1184606 RepID=K6VK54_9MICO)

HSP 1 Score: 223 bits (568), Expect = 3.530e-71
Identity = 107/189 (56.61%), Postives = 139/189 (73.54%), Query Frame = 1
Query:   13 LVAALQRMPTIGPKSAQRLAYHLMQCPPGQAEELADALLEMRRTVRNCALCHNFTDGEYCALCSDESRDETTLCVVGLPRDVSAIERTREFRGRYHVLGGLINPLEGIGPDQVRTRELLARLEREPIQELVLATDPTVAGEATALYLHRQLKD-RFKITRLALGIPLGTDLEYADEVTLGRAFRHRQIL 576
            L+  L R+P +GPKSAQR+A+HL+Q        L D+L+ +++ VR C +C N  +GE C +CSDE RD + +CVV  P+DV AIERTREFRGRYHVLGG INP++GIGPDQ+R  EL ARL    ++E+++ATDP + GEATA YL R L     ++TRLA G+P+G DLEYADEVTLGRAF  R++L
Sbjct:    9 LIDELGRLPGVGPKSAQRIAFHLLQADEEDVRRLVDSLVRVKKQVRFCTVCGNVAEGEKCRICSDERRDGSAICVVEEPKDVLAIERTREFRGRYHVLGGAINPMDGIGPDQLRFSELFARLSDGQVEEVIIATDPNLEGEATAAYLARLLSPLNVRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLL 197          
BLAST of mRNA_P-wetherbeei_contig20602.1.1 vs. uniprot
Match: J2K272_9ACTN (Recombination protein RecR n=44 Tax=Actinomycetia TaxID=1760 RepID=J2K272_9ACTN)

HSP 1 Score: 223 bits (567), Expect = 5.020e-71
Identity = 108/189 (57.14%), Postives = 138/189 (73.02%), Query Frame = 1
Query:   13 LVAALQRMPTIGPKSAQRLAYHLMQCPPGQAEELADALLEMRRTVRNCALCHNFTDGEYCALCSDESRDETTLCVVGLPRDVSAIERTREFRGRYHVLGGLINPLEGIGPDQVRTRELLARLEREPIQELVLATDPTVAGEATALYLHRQLKDR-FKITRLALGIPLGTDLEYADEVTLGRAFRHRQIL 576
            L+  L R+P +GPKSAQR+A+H++Q  P     LA+AL+E++  VR C++C N    E C +C D  RD   +CVV  P+DV AIERTREFRGRYHVLGG I+P+EG+GPD +R RELLARL    + EL+LATDP + GEATA YL R +K    ++TRLA G+P+G DLEYADEVTLGRAF  R++L
Sbjct:    9 LIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLANALMEVKAKVRFCSVCGNVAQEEQCRVCLDPRRDPAVICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIKPMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLL 197          
BLAST of mRNA_P-wetherbeei_contig20602.1.1 vs. uniprot
Match: A0A132MI11_9ACTN (Recombination protein RecR n=6 Tax=Actinomycetia TaxID=1760 RepID=A0A132MI11_9ACTN)

HSP 1 Score: 222 bits (566), Expect = 7.120e-71
Identity = 109/189 (57.67%), Postives = 135/189 (71.43%), Query Frame = 1
Query:   13 LVAALQRMPTIGPKSAQRLAYHLMQCPPGQAEELADALLEMRRTVRNCALCHNFTDGEYCALCSDESRDETTLCVVGLPRDVSAIERTREFRGRYHVLGGLINPLEGIGPDQVRTRELLARLEREPIQELVLATDPTVAGEATALYLHRQLKDR-FKITRLALGIPLGTDLEYADEVTLGRAFRHRQIL 576
            L+  L R+P IGPKSAQR+A+HL+   P     LA  LLE++  VR C  C N  + E C +C D  RD   LCVV  P+DV AIE+TREFRGRYHVLGG I+P+EG+GPD +R RELLARL    ++EL+LATDP + GEATA YL R +K    ++TRLA G+P+G DLEYADEVTLGRAF  R++L
Sbjct:    9 LIDELGRLPGIGPKSAQRIAFHLLNADPADVRRLAQVLLEVKEKVRFCVTCGNVAESEQCRICLDPRRDPAVLCVVEEPKDVVAIEKTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVEELILATDPNLEGEATATYLARLVKPMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLL 197          
BLAST of mRNA_P-wetherbeei_contig20602.1.1 vs. uniprot
Match: A0A6G7XT80_9ACTN (Recombination protein RecR n=1 Tax=Nocardioides sp. HDW12B TaxID=2714939 RepID=A0A6G7XT80_9ACTN)

HSP 1 Score: 222 bits (565), Expect = 1.010e-70
Identity = 108/189 (57.14%), Postives = 140/189 (74.07%), Query Frame = 1
Query:   13 LVAALQRMPTIGPKSAQRLAYHLMQCPPGQAEELADALLEMRRTVRNCALCHNFTDGEYCALCSDESRDETTLCVVGLPRDVSAIERTREFRGRYHVLGGLINPLEGIGPDQVRTRELLARLEREPIQELVLATDPTVAGEATALYLHRQLKDR-FKITRLALGIPLGTDLEYADEVTLGRAFRHRQIL 576
            L+  L R+P +GPKSAQR+A+HL+Q  P     LA+ L++++  VR CA+C N  + E C +C D  RD T LCVV  P+DV AIERTREFRGRYHVLGG I+P++GIGP+Q+RTREL+ RL    + E++LATDP + GEATA YL R L+D   ++TRLA G+P+G DLEYADEVTLGRAF  R+ +
Sbjct:    9 LIDELGRLPGVGPKSAQRIAFHLLQADPVDVRRLAEILVQVKEKVRFCAVCGNVAEEETCRICRDPRRDATLLCVVEEPKDVVAIERTREFRGRYHVLGGAISPMDGIGPEQLRTRELMTRLADGTVLEVILATDPNLEGEATATYLTRLLRDLGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRAV 197          
BLAST of mRNA_P-wetherbeei_contig20602.1.1 vs. uniprot
Match: A0A3N2D975_9MICO (Recombination protein RecR n=2 Tax=Micrococcales TaxID=85006 RepID=A0A3N2D975_9MICO)

HSP 1 Score: 222 bits (565), Expect = 1.110e-70
Identity = 109/186 (58.60%), Postives = 136/186 (73.12%), Query Frame = 1
Query:   13 LVAALQRMPTIGPKSAQRLAYHLMQCPPGQAEELADALLEMRRTVRNCALCHNFTDGEYCALCSDESRDETTLCVVGLPRDVSAIERTREFRGRYHVLGGLINPLEGIGPDQVRTRELLARLEREPIQELVLATDPTVAGEATALYLHRQLKDR-FKITRLALGIPLGTDLEYADEVTLGRAFRHR 567
            L+A L R+P +GPKSAQR+A++++   P     LA+ALLE++  VR C +C N  +GE C +C D  R+ET LCVV  P+DV AIERTREFRGRYHVLGG INP++GIGPD +R REL++RL    + E++LATDP V GEATA YL R L      +TRLA G+P+G DLEYADEVTLGRAF  R
Sbjct:   12 LIAELGRLPGVGPKSAQRIAFYILNSDPADVSRLANALLEVKAKVRFCEICGNVAEGERCRICEDPRRNETQLCVVEEPKDVVAIERTREFRGRYHVLGGAINPIDGIGPDDLRIRELMSRLASGVVTEVILATDPNVEGEATAAYLSRLLTSMDVAVTRLASGLPVGGDLEYADEVTLGRAFEGR 197          
BLAST of mRNA_P-wetherbeei_contig20602.1.1 vs. uniprot
Match: A0A0A8ELA3_9ACTN (Recombination protein RecR n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A0A8ELA3_9ACTN)

HSP 1 Score: 221 bits (564), Expect = 1.260e-70
Identity = 108/189 (57.14%), Postives = 137/189 (72.49%), Query Frame = 1
Query:   13 LVAALQRMPTIGPKSAQRLAYHLMQCPPGQAEELADALLEMRRTVRNCALCHNFTDGEYCALCSDESRDETTLCVVGLPRDVSAIERTREFRGRYHVLGGLINPLEGIGPDQVRTRELLARLEREPIQELVLATDPTVAGEATALYLHRQLKDR-FKITRLALGIPLGTDLEYADEVTLGRAFRHRQIL 576
            L+  L R+P +GPKSAQR+A+H++Q  P     LA+AL+E++  VR C++C N    E C +C D  RD   +CVV  P+DV AIERTREFRGRYHVLGG I+P+EG+GPD +R RELLARL    + EL+LATDP + GEATA YL R +K     +TRLA G+P+G DLEYADEVTLGRAF  R++L
Sbjct:    5 LIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLANALMEVKAKVRFCSVCGNVAQEEQCRVCLDPRRDPAVICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIKPMGLTVTRLASGLPVGGDLEYADEVTLGRAFEGRRLL 193          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20602.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X8XJU2_9BURK3.570e-7461.70Recombination protein RecR n=1 Tax=Burkholderiales... [more]
UPI001D01A2F55.500e-7259.02recombination mediator RecR n=1 Tax=Phycicoccus ma... [more]
A0A2N3YL60_9MICO1.280e-7156.84Recombination protein RecR n=7 Tax=Intrasporangiac... [more]
RECR_STRCO3.530e-7157.67Recombination protein RecR n=200 Tax=Actinomycetia... [more]
K6VK54_9MICO3.530e-7156.61Recombination protein RecR n=2 Tax=Austwickia TaxI... [more]
J2K272_9ACTN5.020e-7157.14Recombination protein RecR n=44 Tax=Actinomycetia ... [more]
A0A132MI11_9ACTN7.120e-7157.67Recombination protein RecR n=6 Tax=Actinomycetia T... [more]
A0A6G7XT80_9ACTN1.010e-7057.14Recombination protein RecR n=1 Tax=Nocardioides sp... [more]
A0A3N2D975_9MICO1.110e-7058.60Recombination protein RecR n=2 Tax=Micrococcales T... [more]
A0A0A8ELA3_9ACTN1.260e-7057.14Recombination protein RecR n=2 Tax=unclassified St... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20602contigP-wetherbeei_contig20602:388..966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1463879.JOHP01000040_gene3776
Preferred namerecR
PFAMsHHH,RecR,Toprim_4
Model size579
Max annot lvl201174|Actinobacteria
KEGG koko:K06187
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.67e-74
EggNOG OGsCOG0353@1|root,COG0353@2|Bacteria,2GJY0@201174|Actinobacteria
DescriptionMay play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
Cds size579
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186204.3101513-CDS-P-wetherbeei_contig20602:387..9661683186204.3101513-CDS-P-wetherbeei_contig20602:387..966Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20602 388..966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20602.1.1prot_P-wetherbeei_contig20602.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20602 388..966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20602.1.1

>prot_P-wetherbeei_contig20602.1.1 ID=prot_P-wetherbeei_contig20602.1.1|Name=mRNA_P-wetherbeei_contig20602.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=193bp
SAERLVAALQRMPTIGPKSAQRLAYHLMQCPPGQAEELADALLEMRRTVR
NCALCHNFTDGEYCALCSDESRDETTLCVVGLPRDVSAIERTREFRGRYH
VLGGLINPLEGIGPDQVRTRELLARLEREPIQELVLATDPTVAGEATALY
LHRQLKDRFKITRLALGIPLGTDLEYADEVTLGRAFRHRQIL*
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mRNA from alignment at P-wetherbeei_contig20602:388..966-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20602.1.1 ID=mRNA_P-wetherbeei_contig20602.1.1|Name=mRNA_P-wetherbeei_contig20602.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig20602:388..966- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCAGAACGGCTGGTGGCGGCGCTCCAGCGGATGCCGACCATCGGCCC TAAATCGGCGCAGCGCCTAGCTTACCACCTCATGCAATGCCCTCCGGGGC AGGCCGAGGAACTGGCTGATGCCCTTTTGGAGATGCGCCGGACCGTGCGC AACTGCGCCCTCTGTCACAATTTTACAGATGGCGAGTATTGCGCCCTTTG CTCCGATGAAAGCCGCGATGAGACGACGCTCTGCGTTGTCGGGCTGCCTC GGGACGTTTCCGCTATCGAGCGGACTCGCGAGTTCCGTGGGCGCTATCAC GTGTTGGGCGGACTCATCAATCCGCTCGAGGGCATAGGCCCCGATCAGGT GCGCACCCGAGAGCTGCTCGCGAGGCTCGAGCGGGAGCCTATCCAGGAAC TCGTTCTGGCCACCGACCCCACGGTGGCTGGGGAAGCCACCGCTCTTTAC TTGCATCGCCAGCTCAAGGACCGATTCAAGATCACTCGATTGGCTCTGGG TATCCCCCTGGGCACGGATCTCGAGTACGCCGACGAGGTGACTCTGGGAA GAGCTTTCCGCCACCGTCAAATCTTGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20602:388..966-

>mRNA_P-wetherbeei_contig20602.1.1 ID=mRNA_P-wetherbeei_contig20602.1.1|Name=mRNA_P-wetherbeei_contig20602.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig20602:388..966- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCAGAACGGCTGGTGGCGGCGCTCCAGCGGATGCCGACCATCGGCCC
TAAATCGGCGCAGCGCCTAGCTTACCACCTCATGCAATGCCCTCCGGGGC
AGGCCGAGGAACTGGCTGATGCCCTTTTGGAGATGCGCCGGACCGTGCGC
AACTGCGCCCTCTGTCACAATTTTACAGATGGCGAGTATTGCGCCCTTTG
CTCCGATGAAAGCCGCGATGAGACGACGCTCTGCGTTGTCGGGCTGCCTC
GGGACGTTTCCGCTATCGAGCGGACTCGCGAGTTCCGTGGGCGCTATCAC
GTGTTGGGCGGACTCATCAATCCGCTCGAGGGCATAGGCCCCGATCAGGT
GCGCACCCGAGAGCTGCTCGCGAGGCTCGAGCGGGAGCCTATCCAGGAAC
TCGTTCTGGCCACCGACCCCACGGTGGCTGGGGAAGCCACCGCTCTTTAC
TTGCATCGCCAGCTCAAGGACCGATTCAAGATCACTCGATTGGCTCTGGG
TATCCCCCTGGGCACGGATCTCGAGTACGCCGACGAGGTGACTCTGGGAA
GAGCTTTCCGCCACCGTCAAATCTTGTAG
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