mRNA_P-wetherbeei_contig20595.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20595.2.1
Unique NamemRNA_P-wetherbeei_contig20595.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: D7G3E5_ECTSI (Spt4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E5_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.760e-28
Identity = 54/89 (60.67%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    4 EGEGEGESASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRICESSGG 270
            EG  E   A IP SLK LRACKRC LVK  DQ  F N GCENCPFL M+ D  RV DCT+ YF+GLI+M++P  SWV +WQRI E   G
Sbjct:   15 EGLDEFAGAEIPTSLKGLRACKRCSLVKGNDQ--FVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPESSWVGKWQRISECRPG 101          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A835Z5B7_9STRA (Spt4/RpoE2 zinc finger-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B7_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.730e-26
Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   22 ESASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 252
            + A +P  LKALRACKRC LVKT  Q  F  +GCENCPFL +++  ERV++CTS+YF+G+I+M+ P+ SWVARWQRI
Sbjct:   19 DMAQVPGELKALRACKRCALVKTLTQ--FTEQGCENCPFLRIEESAERVHECTSSYFSGMIAMLNPKESWVARWQRI 93          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A1Z5KK11_FISSO (Transcription elongation factor SPT4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KK11_FISSO)

HSP 1 Score: 102 bits (253), Expect = 7.180e-24
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   25 SASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 252
            SAS+P +LK +RACKRC L+KT  Q  FY+EGCENCPFL M D+ ERVN CT+A+F G  ++++P  SW A+W R+
Sbjct:   22 SASVPLNLKTIRACKRCGLLKT--QGQFYDEGCENCPFLEMTDNMERVNSCTTAFFEGTAAVMDPGESWAAKWIRV 95          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A7S2IAX2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IAX2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 8.360e-24
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    1 GEGEGEGE---------SASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 252
            GEGE E E          A  P SL+ +RACKRC ++KT DQ  F+NEGCENCPFL M+  TER N CT+A+F G  ++++PR SWVA+W R+
Sbjct:   24 GEGEEEEELPEQVLNLAQARTPSSLRGMRACKRCGILKTFDQ--FFNEGCENCPFLQMEGGTERCNRCTTAFFEGQAAVMDPRASWVAKWLRV 114          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A814IDH4_9BILA (Transcription elongation factor SPT4 n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814IDH4_9BILA)

HSP 1 Score: 100 bits (249), Expect = 1.700e-23
Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   25 SASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCP-FLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 252
            SASIP SLK LRAC+ C L+KT DQ  F+NEGC+NC  FL ++ + +R+ DCTSA F G+I+M++P+ SWVA+WQRI
Sbjct:    2 SASIPASLKGLRACRVCSLIKTLDQ--FFNEGCDNCERFLRLRGNRDRIIDCTSANFDGMIAMMDPQDSWVAKWQRI 76          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A1J6IFV7_NICAT (Transcription elongation factor spt4-like 2 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IFV7_NICAT)

HSP 1 Score: 100 bits (248), Expect = 1.710e-23
Identity = 51/95 (53.68%), Postives = 62/95 (65.26%), Query Frame = 1
Query:   13 GEGESASIPQSL-KALRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRICESSGGGLVHWRKL 294
            G  ++A IP S    LRAC RC LVKT DQ  F   GCENCPF  M +D ERV DCT++ FTGLIS+++P  SW ARW RI ++ G G   +R L
Sbjct:    2 GSQQAAQIPTSFGHELRACLRCRLVKTYDQ--FRESGCENCPFFKMDEDYERVGDCTTSNFTGLISVMDPTRSWAARWLRIEKNIGSGKCLFRCL 94          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A662XZF9_9STRA (Spt4 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZF9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.780e-23
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   22 ESASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 252
            + A IP + + LRAC  C L+KT  Q  FY+ GCENC FL M D+ +RV +CTSAYF G+I+M++P+ SWVA+WQRI
Sbjct:   20 QHADIPNTFRELRACMTCSLIKTFTQ--FYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRI 94          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A3M7RGB3_BRAPC (Transcription elongation factor SPT4 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7RGB3_BRAPC)

HSP 1 Score: 99.8 bits (247), Expect = 3.290e-23
Identity = 44/77 (57.14%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   25 SASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCP-FLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 252
            SASIP+SL+ +RACK C L+KT DQ  F+NEGC+NC  FL+++ D +++ DCTS  F G+I+M++P  SWVARWQ+I
Sbjct:    2 SASIPRSLRGIRACKMCGLIKTMDQ--FFNEGCDNCENFLHLRGDRDQILDCTSENFDGMIAMMDPEDSWVARWQQI 76          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: B7FXW7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FXW7_PHATC)

HSP 1 Score: 99.8 bits (247), Expect = 5.440e-23
Identity = 40/76 (52.63%), Postives = 61/76 (80.26%), Query Frame = 1
Query:   25 SASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 252
            +AS+P +LKA+RACKRC ++KT +Q  F ++GCENCPFL+M DD ++VN CT+A++ G  ++++PR SW A+W R+
Sbjct:   22 NASVPTNLKAVRACKRCGILKTPEQ--FLDDGCENCPFLHMADDMQQVNKCTTAFYEGQAAVMDPRDSWAAKWIRV 95          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A812ZC74_SYMMI (SUPT4H1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZC74_SYMMI)

HSP 1 Score: 98.2 bits (243), Expect = 8.720e-23
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 1
Query:   55 LRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRICESSGGGLVHWRKLSE*EDD*AGLQVYFYPGDYTLR 360
            +R C RC L+KT DQ  FY  GCENC FL++  +  R+N+CTSAYF G+I+++EP GSWVARWQ+I E++  GL     + E   D   +  Y    +Y+ R
Sbjct:    1 MRCCLRCSLLKTVDQ--FYESGCENCEFLHLSGNQSRINNCTSAYFAGMIALLEPHGSWVARWQKI-ENAVPGLYAVEVVGELPQD---VIEYCEDNNYSYR 96          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3E5_ECTSI1.760e-2860.67Spt4 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z5B7_9STRA2.730e-2661.04Spt4/RpoE2 zinc finger-domain-containing protein n... [more]
A0A1Z5KK11_FISSO7.180e-2457.89Transcription elongation factor SPT4 n=2 Tax=Fistu... [more]
A0A7S2IAX2_9STRA8.360e-2452.69Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A814IDH4_9BILA1.700e-2359.74Transcription elongation factor SPT4 n=1 Tax=Brach... [more]
A0A1J6IFV7_NICAT1.710e-2353.68Transcription elongation factor spt4-like 2 n=1 Ta... [more]
A0A662XZF9_9STRA2.780e-2355.84Spt4 domain-containing protein n=1 Tax=Nothophytop... [more]
A0A3M7RGB3_BRAPC3.290e-2357.14Transcription elongation factor SPT4 n=1 Tax=Brach... [more]
B7FXW7_PHATC5.440e-2352.63Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A812ZC74_SYMMI8.720e-2346.08SUPT4H1 protein n=1 Tax=Symbiodinium microadriatic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20595contigP-wetherbeei_contig20595:63..921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G3E5
Preferred nameSUPT4H1
PFAMsSpt4
Model size709
Max annot lvl2759|Eukaryota
KEGG koko:K15171
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000182,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0000993,GO:0001098,GO:0001099,GO:0001181,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005703,GO:0005705,GO:0006139,GO:0006282,GO:0006325,GO:0006338,GO:0006342,GO:0006351,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006366,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008023,GO:0008150,GO:0008152,GO:0008270,GO:0008298,GO:0008380,GO:0009058,GO:0009059,GO:0009452,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016479,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032044,GO:0032774,GO:0032784,GO:0032785,GO:0032786,GO:0032968,GO:0032991,GO:0033036,GO:0034243,GO:0034244,GO:0034641,GO:0034645,GO:0034654,GO:0036260,GO:0040029,GO:0043167,GO:0043169,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045943,GO:0045944,GO:0046483,GO:0046872,GO:0046914,GO:0046982,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0060255,GO:0065007,GO:0070013,GO:0070063,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090069,GO:0090262,GO:0090304,GO:0097159,GO:0097659,GO:0098687,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2000232,GO:2000819,GO:2001020,GO:2001141,GO:2001207,GO:2001208,GO:2001209
Exons2
Evalue1.38e-20
EggNOG OGsCOG5204@1|root,KOG3490@2759|Eukaryota
Ec32 ortholog descriptionTranscription initiation Spt4
Ec32 orthologEc-00_006540.1
Descriptionpositive regulation of DNA-templated transcription, elongation
Cds size228
COG categoryK
BRITEko00000,ko03019,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186203.8251956-UTR-P-wetherbeei_contig20595:62..4681683186203.8251956-UTR-P-wetherbeei_contig20595:62..468Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20595 63..468 -
1683186203.8557763-UTR-P-wetherbeei_contig20595:846..9211683186203.8557763-UTR-P-wetherbeei_contig20595:846..921Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20595 847..921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186203.8372114-CDS-P-wetherbeei_contig20595:468..6661683186203.8372114-CDS-P-wetherbeei_contig20595:468..666Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20595 469..666 -
1683186203.8463647-CDS-P-wetherbeei_contig20595:816..8461683186203.8463647-CDS-P-wetherbeei_contig20595:816..846Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20595 817..846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20595.2.1prot_P-wetherbeei_contig20595.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20595 469..846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20595.2.1

>prot_P-wetherbeei_contig20595.2.1 ID=prot_P-wetherbeei_contig20595.2.1|Name=mRNA_P-wetherbeei_contig20595.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
MLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRG
SWVARWQRICESSGGGLVHWRKLSE*
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mRNA from alignment at P-wetherbeei_contig20595:63..921-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20595.2.1 ID=mRNA_P-wetherbeei_contig20595.2.1|Name=mRNA_P-wetherbeei_contig20595.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=859bp|location=Sequence derived from alignment at P-wetherbeei_contig20595:63..921- (Phaeothamnion wetherbeei SAG_119_79)
GGCGAGGGCGAAGGAGAAGGAGAGTCGGCGAGCATCCCGCAGTCGCTCAA GGCGCTTCGTGCCTGCAAGCGCTGCATGCTAGTAAAGACCACAGACCAGG CAAGCGTCAGGACTCTCGTTCTAGAAAATTGGCCCATCTATTGCCAGTGT TTCGTCGTCGTCTTCACAACATGTTTCCAGTCTCCGTGCTTAACTTTCTG AACATTCTACCACGCTGCTGCAACCACATTTGCTTCTTCTCTATGTTCTC CTCAGTTTTACAACGAGGGCTGCGAGAACTGTCCATTCTTGTATATGAAA GACGACACGGAGCGCGTCAACGACTGCACTTCCGCCTACTTTACCGGCCT CATCTCAATGATCGAGCCGCGGGGGAGCTGGGTCGCTAGATGGCAGCGGA TCTGTGAGTCGTCAGGCGGAGGCTTGGTACATTGGAGAAAGTTGAGCGAA TGAGAGGATGATTGAGCTGGCTTGCAGGTTTACTTTTACCCTGGCGATTA TACTCTCCGCCTGTTTATAGGGCTGGGGCTCTCGTTTTGTGCATTCTTCA TGTGGAGTGGGACATCCCGAGGGGGCGCATCTTTTGTTTGGAGTTTCTGT GTCTCTAGCACTATAATGGAAGACTCCGGGAAACTGTGGCGAGATTTTTG CCTCCCCATCCTTGTCTTATCCCATGTCACTCCTTGCTACTTTCGGCGGT GGCTCCGGGCGCTGGCTGCGGCTGTTACGGCGATTGCGTGCTGGCGGCTG TATTCGGGCTGTCTGGCGGCCCTTTTGCCGCCCACCCTTTCTTTATTTCG TCGACTAATCGGTCGACGCTTTTCTTCTTCCCTTGTTTGTTTCCTCTCTC GTTTCCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20595:63..921-

>mRNA_P-wetherbeei_contig20595.2.1 ID=mRNA_P-wetherbeei_contig20595.2.1|Name=mRNA_P-wetherbeei_contig20595.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig20595:63..921- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTAGTAAAGACCACAGACCAGGCAAGCTTTTACAACGAGGGCTGCGA
GAACTGTCCATTCTTGTATATGAAAGACGACACGGAGCGCGTCAACGACT
GCACTTCCGCCTACTTTACCGGCCTCATCTCAATGATCGAGCCGCGGGGG
AGCTGGGTCGCTAGATGGCAGCGGATCTGTGAGTCGTCAGGCGGAGGCTT
GGTACATTGGAGAAAGTTGAGCGAATGA
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