mRNA_P-wetherbeei_contig2059.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2059.3.1
Unique NamemRNA_P-wetherbeei_contig2059.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2059.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2059contigP-wetherbeei_contig2059:3442..5902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1073
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006190.1
Cds size468
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2059.3.1prot_P-wetherbeei_contig2059.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2059 3494..5349 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186203.5707958-UTR-P-wetherbeei_contig2059:3441..34931683186203.5707958-UTR-P-wetherbeei_contig2059:3441..3493Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2059 3442..3493 +
1683186203.6431193-UTR-P-wetherbeei_contig2059:5349..59021683186203.6431193-UTR-P-wetherbeei_contig2059:5349..5902Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2059 5350..5902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186203.5809925-CDS-P-wetherbeei_contig2059:3493..35291683186203.5809925-CDS-P-wetherbeei_contig2059:3493..3529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2059 3494..3529 +
1683186203.590285-CDS-P-wetherbeei_contig2059:3733..38341683186203.590285-CDS-P-wetherbeei_contig2059:3733..3834Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2059 3734..3834 +
1683186203.6019945-CDS-P-wetherbeei_contig2059:4038..40861683186203.6019945-CDS-P-wetherbeei_contig2059:4038..4086Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2059 4039..4086 +
1683186203.612057-CDS-P-wetherbeei_contig2059:4319..43911683186203.612057-CDS-P-wetherbeei_contig2059:4319..4391Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2059 4320..4391 +
1683186203.6220808-CDS-P-wetherbeei_contig2059:4828..49401683186203.6220808-CDS-P-wetherbeei_contig2059:4828..4940Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2059 4829..4940 +
1683186203.6333299-CDS-P-wetherbeei_contig2059:5250..53491683186203.6333299-CDS-P-wetherbeei_contig2059:5250..5349Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2059 5251..5349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2059.3.1

>prot_P-wetherbeei_contig2059.3.1 ID=prot_P-wetherbeei_contig2059.3.1|Name=mRNA_P-wetherbeei_contig2059.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
MATNGGTAHEPETVWQVIVVQARHLRGKGTEEPTHVQCAIAYGENRELTH
TVHEAQPLWNYWTQFSDQPGVKQMEFVLYDKENDGSVELGRVVLDLAVFR
KKKGKAQDMWKKLKKDGKLLKGEVHLTITFEEMHATTDDEMQKDCLDAAR
HCIIM*
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mRNA from alignment at P-wetherbeei_contig2059:3442..5902+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2059.3.1 ID=mRNA_P-wetherbeei_contig2059.3.1|Name=mRNA_P-wetherbeei_contig2059.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2461bp|location=Sequence derived from alignment at P-wetherbeei_contig2059:3442..5902+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGAAACCCCGTGTGAAAGGGAGGAAGGAAGGACTTTATCAAGGCTGCT
GAATGGCGACCAACGGGGGGACCGCGCATGAACCCGAGGTCGGTGACGAT
AGCATCACTTCATTCTTCGTCATTGGGATCCAGGAGCTTTAACTTTTGTT
GTTTTGCATGCAAAACGTCTTCGACGGGGTCACGGTGTTTCTAACGTTGG
CTTTTGTATTGCCGCCGAAGCGTCCTCTTGCATCCCTGCGCAATGCTGCT
CTCTTAGCGTCCATTTTCTATCGTTTCTTCGCCGCCTACCAGACAGTGTG
GCAGGTGATAGTCGTGCAAGCTCGACATCTTCGTGGCAAGGGCACAGAGG
AGCCAACGCACGTCCAGTGCGCCATTGCCTATGGTGAAAACCGGTAAGCA
GCTTCCTCACAATTTAGGCCCGCCCGGTTCAGAGCCCAGCGACAAGCCGC
CACTGACCTCGTTTTCGGCCTGGGATACTTGTTCTGTGTGCTTGAGGAGG
CAGGCGTTCATGGCCTCTGCCGCCCTTTCCGCACTATCGCTGATTCCTTC
GCGTTGTGCTTTACTTCCCCTTCCCTCGCCGCCGCGGCGAAACGCAGAGA
GTTGACGCACACCGTGCACGAGGCACAGCCGCTTTGGAACTATTGGCAAG
TCAATCGCCGTTTTCTCAATAGGTTGCCGCCAGTCAAAGGCGCCACGAAT
GCCTGTTTGCCGTTGTGTGTTGTTCACCTTGGTTGTGCTCTTGCTTTTTG
GCGTTTGGGACGCATACCGACTGCTTCGGTTGATGCCTGCAGAACTTCGG
CGTACGCCCTCTCACCCGCCACAGTGATTGGTTGACTTTTCCTAATGGCG
GCTTGGCACTGTCGGATCCCAACAACAGGACTCAGTTCAGTGACCAGCCG
GGCGTCAAACAAATGGAGTTTGTGCTCTACGATAAGGAGAATGACGGGAG
GTGCGTGTACTTTATTCACGCTCGCGACCATTCACACTCACGACCTTTTT
TTCTCTTCACATCATCCTTTCGAAGATTTTTTCGGTGATCCAACGTCACA
GAAGAAGCTTGTGGCTTCGCTGTCGAATCGTGCCATGCCAGCGAGAAACT
CCAGCAGATTTTTCACCTGTTCCTGCTGCATTTCGCCGGATACAGCAAAT
GCCTCTGAGCTTTAAACGAGCCATGCTGCTGAGGATGAATCCCAAACCAC
TGCCAGACATTTCTTCGCCTCTGTCACTTCTCATTGCTGACGTCCTTGCG
CTCAACCTCTGGGCGTCCGCGCTGCTGCTGCGTGGATGGCGGCATCGACA
ACGGGCCCGGCGCGCAATGGCGGCGGCGGTTGCTGCCGTGGCGGCATCGG
CAACGGCGGCGTTGCTTGAAACAACCCTCACACACAGCGTGGAGCTGGGG
CGGGTGGTGCTGGACCTGGCGGTCTTCCGAAAAAAGAAGGGCAAGGCGCA
GGACATGTGGAAGAAGCTGAAGAAGGACGGAAAGCTGCTCAAGGGAGAGG
TGAGAGAGGAAAGAAGAAGCGGGCGCCCGCTCGCTGTTGGCGCCATTCCC
CGCTTCTGTTGCCGCCCCAGCCGCTGTTCATAATTGCCCCAGGAGCTGCT
GACGGCTTAGGTGCAAGGTTGGATCGCCCGGGGGAGTTGGAGGGTTTGGG
GCAGCTCGCAAAGCCAGACTCGACACTGCCTGTATCATTTTTTCTAAGGG
TGTCCGCCGGTGTAGCTTCCATGGCTGAGGCCTCTTCTATCTCGCACGCT
TCAATCGCCAACGCCGCTGAAATTGCCTTCCTACCTTGAAAACCCTTGCC
TGTGCGCAGGTCCACCTGACAATAACGTTCGAGGAGATGCACGCGACGAC
CGACGACGAGATGCAGAAGGACTGCTTGGATGCTGCGCGGCACTGCATCA
TCATGTGAGGGTGTTTTTATTCTTTCTCACAGATTCGATCGCCCCATTGG
CACCTTCCAACGGCGGCGATCGCGATGGCAGTAGGTGGCGGCGGCGGCGG
TGGTGACAACATTAGCGGCCACAGGGGCAGCGGCGACACGGCTGCGGCGT
CATCGGCGACAGTTGCGATATGTGTTGCTGGCAGCAGAGGCGACAGGAGA
AGTTGCGTCAACCGGCGGCACACGCCGAGTGCCTTTCTTCGGGCATCGCT
TATGATCGCCGCCTCCGCCTCCGCATGCGTGTATGATGACGCCGTACGTT
GGCAGCAAATAGGGGGCAGGTCCTGCCGTCCACGGAGGGAAACGGATACG
CCAATTTTGGGGCATGGCGACATTCAAATTCGTATCGTTGGTTTCGGATT
TCGGAGGAGACGAGAGTGCATTGGTAAGAGCACAGAGAAAGAGTTAGAGG
AGACGACTGGACACGGCGGCCGAACCCTGGTGAGGGCCACAGTGGCACTG
ATCGGAACCGGTAAGCACGATCTGCCGGCGCCGGCGCCATAACTTAGCAA
TCCATGCCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2059:3442..5902+

>mRNA_P-wetherbeei_contig2059.3.1 ID=mRNA_P-wetherbeei_contig2059.3.1|Name=mRNA_P-wetherbeei_contig2059.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig2059:3442..5902+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACCAACGGGGGGACCGCGCATGAACCCGAGACAGTGTGGCAGGT
GATAGTCGTGCAAGCTCGACATCTTCGTGGCAAGGGCACAGAGGAGCCAA
CGCACGTCCAGTGCGCCATTGCCTATGGTGAAAACCGAGAGTTGACGCAC
ACCGTGCACGAGGCACAGCCGCTTTGGAACTATTGGACTCAGTTCAGTGA
CCAGCCGGGCGTCAAACAAATGGAGTTTGTGCTCTACGATAAGGAGAATG
ACGGGAGCGTGGAGCTGGGGCGGGTGGTGCTGGACCTGGCGGTCTTCCGA
AAAAAGAAGGGCAAGGCGCAGGACATGTGGAAGAAGCTGAAGAAGGACGG
AAAGCTGCTCAAGGGAGAGGTCCACCTGACAATAACGTTCGAGGAGATGC
ACGCGACGACCGACGACGAGATGCAGAAGGACTGCTTGGATGCTGCGCGG
CACTGCATCATCATGTGA
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