mRNA_P-wetherbeei_contig20586.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20586.1.1
Unique NamemRNA_P-wetherbeei_contig20586.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20586.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20586contigP-wetherbeei_contig20586:1024..1167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog71139.XP_010026579.1
PFAMsCOG2,DUF3510
Model size144
Max annot lvl35493|Streptophyta
KEGG koko:K20289
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005829,GO:0006810,GO:0006891,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016192,GO:0017119,GO:0031984,GO:0032991,GO:0033036,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0048193,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071840,GO:0098791,GO:0099023
Exons1
Evalue2.26e-05
EggNOG OGsKOG2307@1|root,KOG2307@2759|Eukaryota,37NR0@33090|Viridiplantae,3GEB1@35493|Streptophyta
DescriptionConserved oligomeric Golgi complex subunit
Cds size135
COG categoryU
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186203.4606314-UTR-P-wetherbeei_contig20586:1023..10321683186203.4606314-UTR-P-wetherbeei_contig20586:1023..1032Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20586 1024..1032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186203.4722514-CDS-P-wetherbeei_contig20586:1032..11671683186203.4722514-CDS-P-wetherbeei_contig20586:1032..1167Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20586 1033..1167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20586.1.1prot_P-wetherbeei_contig20586.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20586 1033..1167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20586.1.1

>prot_P-wetherbeei_contig20586.1.1 ID=prot_P-wetherbeei_contig20586.1.1|Name=mRNA_P-wetherbeei_contig20586.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=45bp
MSFLCFDPEDFQAGDFHAATFVAELQTRVPLERVRDDLRAHLSSL
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mRNA from alignment at P-wetherbeei_contig20586:1024..1167+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20586.1.1 ID=mRNA_P-wetherbeei_contig20586.1.1|Name=mRNA_P-wetherbeei_contig20586.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig20586:1024..1167+ (Phaeothamnion wetherbeei SAG_119_79)
GGAAGCGAAATGAGCTTCCTGTGCTTCGACCCGGAGGACTTCCAAGCCGG
CGATTTTCACGCGGCAACCTTCGTCGCAGAGCTGCAAACCCGCGTCCCCT
TAGAACGTGTGCGAGATGATCTCCGAGCCCACCTCTCGAGCCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20586:1024..1167+

>mRNA_P-wetherbeei_contig20586.1.1 ID=mRNA_P-wetherbeei_contig20586.1.1|Name=mRNA_P-wetherbeei_contig20586.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=135bp|location=Sequence derived from alignment at P-wetherbeei_contig20586:1024..1167+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTTCCTGTGCTTCGACCCGGAGGACTTCCAAGCCGGCGATTTTCA
CGCGGCAACCTTCGTCGCAGAGCTGCAAACCCGCGTCCCCTTAGAACGTG
TGCGAGATGATCTCCGAGCCCACCTCTCGAGCCTT
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