mRNA_P-wetherbeei_contig2058.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig2058.3.1 vs. uniprot
Match: A0A835ZE19_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE19_9STRA) HSP 1 Score: 117 bits (294), Expect = 9.700e-23 Identity = 140/491 (28.51%), Postives = 188/491 (38.29%), Query Frame = 2
Query: 584 VKRSRFSPSPATGLLGVMENAFLGTFSQDFSSFLPVLTERQVRASLVDVMLRGTGGGDAPAWASGGTGDGGAERDDDWDGTGGLRGDFGGGLGGGGFGDSSDGXSRTGGGSGFRGGNGEAAALTLTXXXXXXXXXGSLWAAVALGALMQGAGVDICQRYISLS-----RDSIRDVDEGET----------SPELVRVNLLL--ACIEDFCGNIESFVSYTFKAVKLWEALPEPTRTELDRLFEWFDHIIRFR----PERPSDWQ-LPGESDGPGGSGNAEEIAHGLCRPLAAHLRRRDVHMFVVTLERFFAENTHAMAADPARVDRFAPQLGPVREALVYLKLLFQADADKSGALSQVCVLGWLVVLNVRLGDLADGVMSCREMTVALENVPGTLRFTSWFHRVENVAHILLFLGCEAEYEQLRRLLNSHNTD-GRVLPPFA-LADVGRDCCHHFLCGEVLRMVGALPPTAGR-----TPAPPCDGGPVAP 1969
++RSRFS SPA G++G +EN+FL TF +DFSSFLP++ E VR SLV M GGG A A +L L+ +LWA++ALGA++QGA + Y +LS RD+ + S L R+ L+ A + D G+ SF +V + L +R R ++ W + GP A A G C A LR FA A AA P D A P+ +AL LK A + G L + ++GWL + + LGD + E+ E+ PG LR++ HR E VA LL GC YE+ RRL + GR L P A D R C HFLC + LR+ G L R T A P D P+ P
Sbjct: 1166 LQRSRFSASPAVGIVGHIENSFLSTFLRDFSSFLPIVGEVPVRRSLVRAMRADAGGGAAAVAAD---------------------------------------------------------SLELS----------TLWASIALGAILQGADELQLRHYANLSVCAARRDAAAEAXXXXXXRGAAAGTALSTALARIQNLVVRAFVCDCLGDGASFTQCVASSVSAQRCVVCVGGGGSSALASARCATVRCRVIPHAQQVQLWDGVAAAFGGPAALVAAAAEAGGDC---GATLRCLPYDQLCTYRPDSFARCC-AAAALPHAEDLRARAAAPLHDALAALKGAADARPEACGVLLRAMLVGWLGFVKLLLGDTSGWQALYTEVIALYESAPGGLRWSGAAHRAEVVALTLLHRGCAEAYERARRLHTRYAAPHGRPLLPRAECCDFARHSCAHFLCRDALRLAGVLSAEEARVSFAGTVAVPRDAPPLQP 1585
BLAST of mRNA_P-wetherbeei_contig2058.3.1 vs. uniprot
Match: D7FTC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC3_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 3.490e-13 Identity = 121/478 (25.31%), Postives = 193/478 (40.38%), Query Frame = 2
Query: 530 SHSWSGELDAVLLARGSL-VKRSRFSPSPATGLLGVMENAFLGTFSQDFSSFLPVLTERQVRASLVDVMLRGTGGGDAPAWASGGTGDGGAERDDDWDGTGGLRGDFGGGLGGG-GFGDSSDGXSRTGGGSGFRGGNGEAAALTLTXXXXXXXXXGSLWAAVALGALMQGAGVDICQRYISLSRDSIRDVDEGETSPELVRVNLLLACIEDFCGNIESFVSYTFKAVKLWEALPEPTRTELD----RLFEWFDHIIRFRPERPSDWQLPGESDGPGGSGNAEE--IAH--GLCRPLAAHLRRRDVHMFVVTLER-FFAENTHAMAA-----------DPARVD-RFAPQLGPVREALVYLKLLFQADADKSGA--LSQVCVLGWLVVLNVRLGDLADGVMSCREMTVALENVPGTLRFTSWFHRVENVAHILLFLGCEAEYEQLRRLLNS-HNTDGRVLPPFALADVGRDC-CHHFLC 1882
S W G +++ + +KR+R SPSPATGL+G+ ENA++G F Q FLP+ +E +R ++V M R ERD ++ G + GG +GGG G+G+S+ G + LW+ V +G L++G + Y+ L+R+++ + T+ E R +A +DF GN + F+ Y A + ALP P + D LF ++ + + + S A+E + H LCR L R V L++ F E++ + + P + +FA +L P + +V+ Q K G L ++ + VL R DG+ C ++ + PG R T+W H LL G +YE LR+ NS + V P A G +C C H C
Sbjct: 11 SEGWGGHAGGGMVSTAMIPLKRARLSPSPATGLIGLKENAYIGDFFQTMG-FLPITSESFIRKAMVSTMFRTM-----------------QERDPEFPGP-----EAGGVVGGGHGWGESAL----------VPGXXXXXXLVRAESAVENAAAACVLWSTVGVGCLIRGRPKSSVEGYVHLAREALSVCFDDGTA-ETARAFTAMALFQDFMGNEDKFIKYIDFAKSIINALP-PEKVPADLLDTHLFVKACDMLEGYSHQVDEEYIKAASGTLESCAMAKEPRLIHQKDLCRWLLKADIRLTACFSVDMLDKGAFNEDSSDVGSLRSFDQSTEPPPPGEMSLKFAAELLPECDLMVHAT---QTPEVKGGVGELYFHSIMAYANVLQGRQSWAMDGLWRCADIFLTS---PGICRLTAWTHLAHCTLACLLLSGRHEKYESLRQAYNSVMDEPSAVRVPPAEEWTGMECICKHVFC 447
BLAST of mRNA_P-wetherbeei_contig2058.3.1 vs. uniprot
Match: A0A6H5J7P2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P2_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 1.150e-8 Identity = 68/219 (31.05%), Postives = 100/219 (45.66%), Query Frame = 2
Query: 578 SLVKRSRFSPSPATGLLGVMENAFLGTFSQDFSSFLPVLTERQVRASLVDVMLRGTGGGDAPAWASGGTGDGGAERDDDWDGTGGLRGDFGGGLGGGGFGDSSDGXSRTGGGSGF-RGGNG-EAAALTLTXXXXXXXXXGSLWAAVALGALMQGAGVDICQRYISLSRDSIRDVDEGETSPELVRVNLLLACIEDFCGNIESFVSYTFKAVKLWEALPE 1228
+L R+R SPSPATGL+G+ ENA++G F Q FLP+ +E +R ++V+ M R ERD + G GG+ GGG G GGG G R N E AA LW+ V +G L++G + Y+ L+R+++ + T+ E R +A +DF GN + F+ Y A + ALP+
Sbjct: 16 ALPARARLSPSPATGLIGLKENAYIGDFFQTMG-FLPITSESFIRKAMVNTMFRTM-----------------QERDPE------FAGPEAGGVFGGGQGWGEHALVPGGGGGGLARAENAIENAAAACV-----------LWSTVGVGCLIRGRPKSSVEGYVRLAREALSVCFDDGTA-ETARAFTAMALFQDFMGNEDKFIKYIDFAKSIINALPQ 198
BLAST of mRNA_P-wetherbeei_contig2058.3.1 vs. uniprot
Match: A0A6H5L0W7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W7_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 1.380e-7 Identity = 61/188 (32.45%), Postives = 88/188 (46.81%), Query Frame = 2
Query: 584 VKRSRFSPSPATGLLGVMENAFLGTFSQDFSSFLPVLTERQVRASLVDVMLRGTGGGDAPAWA-SGGTGDGGAERDDDWDGTGGLRGDFGGGLGGGGFGDSSDGXSRTGGGSGFRGGNGEAAALTLTXXXXXXXXXGSLWAAVALGALMQGAGVDICQRYISLSRDSIRDVDEGETSPELVRVNLLLA 1144
+KR R S SPATGL+G+ EN FLG F LP+ TE VR ++V+VM+R GG A++ +GG+G G D++ G+ GG A TL +W A+ALGALM+G V+ Y+ L+R+S+ D +G S E R L+++
Sbjct: 162 LKRCRLSASPATGLVGMQENGFLGAFFGCLG-ILPLTTESTVRNAMVEVMMRQCGG---QAYSRTGGSGMEGLAEDEE---------------------------------KGWCGGGALARRHTLPDHPAKCM----MWCAIALGALMRGVPVERVTGYVQLARESLADCFDGR-SVEHARAYLIMS 307
BLAST of mRNA_P-wetherbeei_contig2058.3.1 vs. uniprot
Match: D8LCV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 6.160e-5 Identity = 58/242 (23.97%), Postives = 94/242 (38.84%), Query Frame = 2
Query: 587 KRSRFSPSPATGLLGVMENAFLGTFSQDFSSFLPVLTERQVRASLVDVMLRGTGGGDAPAWASGGTGDGGAERDDDWDGTGGLRGDFGGGLGGGGFGDSSDGXSRTGGGSGFRGGN--------GEAAALTLTXXXXXXXXXGSLWAAVALGALMQGAGVDICQRYISLSRDSIRDVDEGETSPELVRVNLLLACIEDFCGNIESFVSYTFKAVKLWEALPEPTRTELDRLFEWFDHIIRFR 1288
KR R S SPATGL+G+ ENAFL F FLP+ T +R ++V +ML + FGD D GG+ G+ + + + W AVALGAL +G+ ++ Y L+++++ + G E+ + ++LA + F G+ E F Y + + E + +D L F I++F+
Sbjct: 9 KRCRLSASPATGLVGMQENAFLSDFF-GCVGFLPLTTPSHIRETMVTIMLPRASSQQSV------------------------------------FGDDCD-----------EGGHYFEAVAPGGDLSKTSARNQFPMDPSACTFWCAVALGALAKGSPIESVTSYAQLAQEALAKSNSGPGDAEVAKAWVILANLHGFMGHKERFEKYLALSDSFLRSSIE--QGSIDTLPVGFAEIVKFK 200 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2058.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig2058.3.1 >prot_P-wetherbeei_contig2058.3.1 ID=prot_P-wetherbeei_contig2058.3.1|Name=mRNA_P-wetherbeei_contig2058.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1104bp MCPGKSQEDVGLHQGAEDLAYDPKADQLGSNAASALAEPPTFIAAPVIWGback to top mRNA from alignment at P-wetherbeei_contig2058:1310..5867- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig2058.3.1 ID=mRNA_P-wetherbeei_contig2058.3.1|Name=mRNA_P-wetherbeei_contig2058.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4558bp|location=Sequence derived from alignment at P-wetherbeei_contig2058:1310..5867- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig2058:1310..5867- >mRNA_P-wetherbeei_contig2058.3.1 ID=mRNA_P-wetherbeei_contig2058.3.1|Name=mRNA_P-wetherbeei_contig2058.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=3312bp|location=Sequence derived from alignment at P-wetherbeei_contig2058:1310..5867- (Phaeothamnion wetherbeei SAG_119_79)back to top |