mRNA_P-wetherbeei_contig20556.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20556.1.1
Unique NamemRNA_P-wetherbeei_contig20556.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20556.1.1 vs. uniprot
Match: D7FGV9_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV9_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.010e-20
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   22 WILARALRYSAESGEWEVKDEDEADRKARHIVHERYVRRLEPTAQGLTRGDPVLAVYPDTTVFYLGEVYKQIPKATNSDMPEIFIKFEDDNTEGGTTPARKLPALYVIPLP 354
            WILAR ++Y  E+ ++E+KD+D+ +           V RLE + +G+ +G+ VLAV+PDTT FYLG +++ +PK        I +KF DD  + G TP R LPA YV+PLP
Sbjct:  388 WILARVIKYVPETHQYELKDDDDKEGIGILTAPRSLVIRLEDSTKGVQKGERVLAVFPDTTSFYLGTIHR-VPKPAPGAERRIEVKFNDDADDTGRTPGRPLPARYVVPLP 497          
BLAST of mRNA_P-wetherbeei_contig20556.1.1 vs. uniprot
Match: A0A6H5L6S1_9PHAE (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S1_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.140e-20
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   22 WILARALRYSAESGEWEVKDEDEADRKARHIVHERYVRRLEPTAQGLTRGDPVLAVYPDTTVFYLGEVYKQIPKATNSDMPEIFIKFEDDNTEGGTTPARKLPALYVIPLP 354
            WILAR ++Y  ++  +E+KD+D+ +           V RLE + +G+ +G+ VLAV+PDTT FYLG +++ +PK        I +KF DD  + G TP R LPA YV+PLP
Sbjct:  116 WILARVIKYVPDTHHYELKDDDDKEGIGILTAPRSLVIRLEDSTKGVQKGERVLAVFPDTTSFYLGTIHR-VPKPAPGAERRIEVKFNDDADDTGRTPGRSLPARYVVPLP 225          
BLAST of mRNA_P-wetherbeei_contig20556.1.1 vs. uniprot
Match: A0A7S2D9R3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D9R3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.810e-14
Identity = 41/113 (36.28%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   13 NEGWILARALRYSAESGEWEVKDEDEADRKARHIVHERYVRRLEPTAQGLTRGDPVLAVYPDTTVFYLGEVYKQIPKATNS--DMPEIFIKFEDDNTEGGTTPARKLPALYVI 345
            N  WILA   +Y      +EV+DED+  +  +    E  + RL+ + + +++G  VLAV+PDTT FY   + K + +++ +    P+I+++FEDD  E G TP R++ A YVI
Sbjct:  150 NGSWILATVKKYYPSEDLFEVQDEDDDSKLTKLPPSE--LMRLDDSVEHMSKGQAVLAVFPDTTSFYRARISKPVKRSSTNYRTSPDIYVQFEDDEDETGRTPHRRVIARYVI 260          
BLAST of mRNA_P-wetherbeei_contig20556.1.1 vs. uniprot
Match: A0A7S3XKW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKW5_HETAK)

HSP 1 Score: 71.6 bits (174), Expect = 3.490e-12
Identity = 44/114 (38.60%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   13 NEGWILARALRYSAESGEWEVKDEDEADRKARHIVHERYVRRLEPTAQGLTRGDPVLAVYPDTTVFYLGEVYKQIPKATNSDMPEIFIKFEDDNTEGGTTPARKLPALYVIPLP 354
            N  WILAR + ++     + V+DED+   K   + H R V RL   +   ++GD VLA++P+TT FY G V+K  P  T++    + I+FEDD    G TP+R +P+ +V+ LP
Sbjct:  147 NGSWILARVVEFNVAKQVYTVQDEDDVT-KVMDLDHNR-VLRLNDGSTHFSKGDAVLAMFPETTSFYRGLVHK--PANTDN---MLQIRFEDDEDGQGRTPSRHIPSRFVLRLP 253          
BLAST of mRNA_P-wetherbeei_contig20556.1.1 vs. uniprot
Match: A0A7S2W6R2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6R2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.870e-10
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   16 EGWILARALRYSAESGEWEVKDEDEADRKARHIVHERYVRRLEPTAQGLTRGDPVLAVYPDTTVFY---LGEVYKQIPKATNSDMPEIFIKFEDDNTEGGTTPARKLPALYVI 345
            E WIL R   Y   +G + V DEDEA++  +  V + ++ RLE     L++G+ VLAVYPDTT FY   +  V +++  A   D     ++F DD  + G  P R +  L++I
Sbjct:  145 EEWILGRVWEYDIAAGVYTVGDEDEAEKTFQ--VSDAHIIRLEQLK--LSKGEEVLAVYPDTTSFYPAIVTSVSRKMGGALAGDSSFCTVQFHDDEDDSGINPDRSVKILHII 253          
BLAST of mRNA_P-wetherbeei_contig20556.1.1 vs. uniprot
Match: A0A0P1ARG5_PLAHL (Histone acetyltransferase SAGA associated factor SGF29 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ARG5_PLAHL)

HSP 1 Score: 65.1 bits (157), Expect = 4.600e-10
Identity = 43/129 (33.33%), Postives = 68/129 (52.71%), Query Frame = 1
Query:   10 SNEGWILARALRYSAESGEWEVKDEDEADR-------KARHIVHERYVRRLEPTAQGLTRGD--------PVLAVYPDTTVFYLGEVYKQIPKATNSDMPEIFIKFEDDNTEGGTTPARKLPALYVIPL 351
            S+E WI+AR ++Y+A+S  +EV+D D  D        K  +IV  ++V  +E     L+ G+         V+A+YP+TT F+   +    PK      P + +KF++D  E G  P RK+P  +V PL
Sbjct:  163 SHELWIMARVVKYNADSRTYEVEDVDCGDEDGEDDAVKRHYIVAWQHV--VELPGDSLSEGEWIQYSLNERVMAMYPNTTSFFRSTIRVPNPKGA----PYVILKFDEDEDEHGLVPDRKVPFRFVAPL 285          
BLAST of mRNA_P-wetherbeei_contig20556.1.1 vs. uniprot
Match: W2KIU3_PHYPR (SGF29 C-terminal domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2KIU3_PHYPR)

HSP 1 Score: 64.7 bits (156), Expect = 7.040e-10
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 1
Query:   10 SNEGWILARALRYSAESGEWEVKD------EDEADRKARHIVHERYVRRLEPTAQGLTRG--------DPVLAVYPDTTVFYLGEVYKQIPKATNSDMPEIFIKFEDDNTEGGTTPARKLPALYVIPL 351
            S+E WI+AR ++++A+S  +EV+D      ED+ D   RH +   + + +E     L  G        + V+A+YP+TT F+   +    PK      P + +KF++D  E G  P RK+P  +V PL
Sbjct:  181 SHELWIMARVVKFNADSNTYEVEDVDSGDDEDDTDAPRRHYIVP-WQQVVELPGDSLPEGTWIQYAVNERVMAMYPNTTSFFRSTIRVPNPKGA----PYVILKFDEDEDEHGFVPDRKVPFRFVAPL 303          
BLAST of mRNA_P-wetherbeei_contig20556.1.1 vs. uniprot
Match: A0A225WCB5_9STRA (SGF29 C-terminal domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WCB5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.240e-9
Identity = 41/126 (32.54%), Postives = 65/126 (51.59%), Query Frame = 1
Query:   10 SNEGWILARALRYSAESGEWEVKD----EDEADRKARHIVHERYVRRLEPTAQGLTRGD--------PVLAVYPDTTVFYLGEVYKQIPKATNSDMPEIFIKFEDDNTEGGTTPARKLPALYVIPL 351
            S+E WI+AR ++++A+S  +EV+D    EDE D   R      + + +E     L  G+         V+A+YP+TT F+   +    PK      P + +KF++D  E G  P RK+P  +V PL
Sbjct:  160 SHELWIMARIVKFNADSNTYEVEDVDSGEDEEDDTPRRHYIVPWQQVVELPGDSLAEGEWIHYALNERVMAMYPNTTSFFRSTIRVPNPKGA----PYVILKFDEDEDEHGFIPDRKVPFRFVAPL 281          
BLAST of mRNA_P-wetherbeei_contig20556.1.1 vs. uniprot
Match: D0MYS2_PHYIT (SGF29 C-terminal domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MYS2_PHYIT)

HSP 1 Score: 63.2 bits (152), Expect = 2.470e-9
Identity = 40/129 (31.01%), Postives = 67/129 (51.94%), Query Frame = 1
Query:   10 SNEGWILARALRYSAESGEWEVKD-------EDEADRKARHIVHERYVRRLEPTAQGLTRGD--------PVLAVYPDTTVFYLGEVYKQIPKATNSDMPEIFIKFEDDNTEGGTTPARKLPALYVIPL 351
            S+E WI+AR ++++A++  +EV+D       ED+ D   RH +   + + +E     L  G+         V+A+YP+TT F+   +    PK      P + +KF++D  E G  P RK+P  +V PL
Sbjct:  168 SHELWIMARVVKFNADTNTYEVEDVDAGDDDEDDVDAPRRHYIVP-WQQVVELPGDSLPEGEWIQYAVNERVMAMYPNTTSFFRSTIRVPNPKGA----PYVILKFDEDEDEHGFVPDRKVPFRFVAPL 291          
BLAST of mRNA_P-wetherbeei_contig20556.1.1 vs. uniprot
Match: A0A3M6VT85_9STRA (SGF29 C-terminal domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VT85_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.390e-9
Identity = 41/129 (31.78%), Postives = 67/129 (51.94%), Query Frame = 1
Query:   10 SNEGWILARALRYSAESGEWEVKDEDEADR-------KARHIVHERYVRRLEPTAQGLTRGD--------PVLAVYPDTTVFYLGEVYKQIPKATNSDMPEIFIKFEDDNTEGGTTPARKLPALYVIPL 351
            S+E WI+AR ++++A+S  +EV+D D  D        +  +IV  + V  +E     L +G+         V+A+YP+TT F+   +    PK      P + +KF++D  E G  P RK+P  +V PL
Sbjct:  164 SHELWIMARVVKFNADSSTYEVEDVDSGDDXXXXDAPRRHYIVPWQQV--VELPGDSLPKGEWIHYAVNERVMAMYPNTTSFFRSTIRVPNPKGA----PYVILKFDEDEDEQGFVPDRKVPFRFVAPL 286          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20556.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FGV9_ECTSI4.010e-2043.24SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A6H5L6S1_9PHAE5.140e-2042.34SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A7S2D9R3_9STRA4.810e-1436.28Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3XKW5_HETAK3.490e-1238.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2W6R2_9STRA1.870e-1036.28Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0P1ARG5_PLAHL4.600e-1033.33Histone acetyltransferase SAGA associated factor S... [more]
W2KIU3_PHYPR7.040e-1032.03SGF29 C-terminal domain-containing protein n=9 Tax... [more]
A0A225WCB5_9STRA2.240e-932.54SGF29 C-terminal domain-containing protein n=1 Tax... [more]
D0MYS2_PHYIT2.470e-931.01SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A3M6VT85_9STRA4.390e-931.78SGF29 C-terminal domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20556contigP-wetherbeei_contig20556:234..977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FGV9
PFAMsDUF1325
Model size354
Max annot lvl2759|Eukaryota
KEGG koko:K03246,ko:K11364
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0008150,GO:0008152,GO:0009628,GO:0009651,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051276,GO:0071704,GO:0071840,GO:1901564
Exons2
Evalue6.58e-21
EggNOG OGsKOG3038@1|root,KOG3038@2759|Eukaryota
Descriptionmethylated histone binding
Cds size354
COG categoryADK
BRITEko00000,ko00001,ko03012,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186202.693213-CDS-P-wetherbeei_contig20556:233..4641683186202.693213-CDS-P-wetherbeei_contig20556:233..464Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20556 234..464 +
1683186202.7105396-CDS-P-wetherbeei_contig20556:854..9771683186202.7105396-CDS-P-wetherbeei_contig20556:854..977Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20556 855..977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20556.1.1prot_P-wetherbeei_contig20556.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20556 234..977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20556.1.1

>prot_P-wetherbeei_contig20556.1.1 ID=prot_P-wetherbeei_contig20556.1.1|Name=mRNA_P-wetherbeei_contig20556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
MPGSNEGWILARALRYSAESGEWEVKDEDEADRKARHIVHERYVRRLEPT
AQGLTRGDPVLAVYPDTTVFYLGEVYKQIPKATNSDMPEIFIKFEDDNTE
GGTTPARKLPALYVIPLP
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mRNA from alignment at P-wetherbeei_contig20556:234..977+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20556.1.1 ID=mRNA_P-wetherbeei_contig20556.1.1|Name=mRNA_P-wetherbeei_contig20556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=744bp|location=Sequence derived from alignment at P-wetherbeei_contig20556:234..977+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGGCAGCAACGAAGGCTGGATCCTGGCGCGCGCGCTGCGCTACTC GGCAGAATCGGGCGAGTGGGAGGTCAAGGACGAGGATGAGGCGGACAGGA AGGCACGCCACATCGTGCACGAGCGCTACGTGCGCCGACTGGAGCCGACG GCGCAGGGTCTGACGCGCGGGGATCCCGTGCTGGCTGTGTACCCCGACAC GACCGTCTTCTACCTTGGCGAGGTCTACAAGGTGCCATAATGCCGGCGAT GTTTGATAGCTAGATTTGATTGGGGGATTCGACGGAAGGCCGATGGCTGA TAGCATTTCGTTTTGTCGCCTGCCATGTTTGATGTGTGCGCCTCGGTTTG TGATGTTTGCGTGGCTGACGATATTTCTGTCCTTCCGTTTACATTATTGG TCTCTCTTATTGTTTTGTGGTTCGCTTTCCTGACCCACTCCCTCTTCGCT TTCTTTCTTTGTTTCCCCCGGCTCCTTCCGCCTGTCGTGGCCGATCCCCG GCCGGCCACTGCCGGCTTTGGCGGGCGGGTTTCTTCCCCATCCACCCCAA AACCCCCTCCCCCCTTCTCATTCGATGCGAAATGAAACAAACAAAATGAG CAAAACAAACGGCAAACAAAGCAGATACCCAAGGCGACGAACTCTGACAT GCCTGAAATCTTCATCAAGTTCGAGGATGACAATACGGAGGGCGGCACCA CGCCTGCCCGCAAGCTGCCGGCGCTCTACGTCATCCCGCTGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20556:234..977+

>mRNA_P-wetherbeei_contig20556.1.1 ID=mRNA_P-wetherbeei_contig20556.1.1|Name=mRNA_P-wetherbeei_contig20556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig20556:234..977+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGGCAGCAACGAAGGCTGGATCCTGGCGCGCGCGCTGCGCTACTC
GGCAGAATCGGGCGAGTGGGAGGTCAAGGACGAGGATGAGGCGGACAGGA
AGGCACGCCACATCGTGCACGAGCGCTACGTGCGCCGACTGGAGCCGACG
GCGCAGGGTCTGACGCGCGGGGATCCCGTGCTGGCTGTGTACCCCGACAC
GACCGTCTTCTACCTTGGCGAGGTCTACAAGCAGATACCCAAGGCGACGA
ACTCTGACATGCCTGAAATCTTCATCAAGTTCGAGGATGACAATACGGAG
GGCGGCACCACGCCTGCCCGCAAGCTGCCGGCGCTCTACGTCATCCCGCT
GCCC
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