mRNA_P-wetherbeei_contig2054.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A835ZC95_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC95_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 7.770e-16 Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1
Query: 31 QGVLISCDVPTRQFILHLNKKRQ--FVLNELDETHLFVEASAVQEIR 165
+GVLI+CDVPT+QFILHLN K+ F++N+LDETHLFVEASAV EIR
Sbjct: 9 KGVLITCDVPTKQFILHLNSKQAQGFIINDLDETHLFVEASAVHEIR 55
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A167QQ08_PHYB8 (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167QQ08_PHYB8) HSP 1 Score: 66.6 bits (161), Expect = 3.350e-13 Identity = 28/52 (53.85%), Postives = 42/52 (80.77%), Query Frame = 1
Query: 19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
V+AV+GVL+ CD +Q +L+LNK+ FV+ +LDETHLF+EAS+V ++R+ L
Sbjct: 2 VKAVKGVLVECDSTVKQIVLNLNKRSNFVIEDLDETHLFIEASSVPQLRYEL 53
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A8H7BNP7_9FUNG (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BNP7_9FUNG) HSP 1 Score: 65.9 bits (159), Expect = 6.580e-13 Identity = 27/52 (51.92%), Postives = 43/52 (82.69%), Query Frame = 1
Query: 19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
V+AV+GVL+ CD +Q +L+LNK+ FV+ +LD+THLF+EAS+VQ++++ L
Sbjct: 2 VKAVKGVLLECDSTVKQIVLNLNKRSHFVIEDLDDTHLFIEASSVQQLQYEL 53
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A1C7NDR9_9FUNG (General transcription and DNA repair factor IIH subunit TFB5 n=8 Tax=Mucorineae TaxID=1344963 RepID=A0A1C7NDR9_9FUNG) HSP 1 Score: 63.9 bits (154), Expect = 3.900e-12 Identity = 26/52 (50.00%), Postives = 42/52 (80.77%), Query Frame = 1
Query: 19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
V+AV+GVL+ CD +Q +L+LNK+ F++ +LDETHLF+EAS V+++++ L
Sbjct: 2 VKAVKGVLLECDSTVKQIVLNLNKRGNFIIEDLDETHLFIEASWVEQLKYEL 53
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A068SFM5_9FUNG (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068SFM5_9FUNG) HSP 1 Score: 66.2 bits (160), Expect = 5.740e-12 Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 1
Query: 19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
V+AV+GVL+ CD +Q +L+LN++ FV+ +LDETHLFVEAS VQE+++ L
Sbjct: 116 VKAVKGVLLECDPTVKQIVLNLNERGNFVIEDLDETHLFVEASCVQELQYEL 167
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A163M8B9_ABSGL (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Absidia TaxID=4828 RepID=A0A163M8B9_ABSGL) HSP 1 Score: 62.8 bits (151), Expect = 1.140e-11 Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
V+AV+GVLI CD +Q +L+LNK+ FV+ +LDETHLF+EAS V ++ L
Sbjct: 2 VKAVKGVLIECDTTVKQIVLNLNKRGNFVIEDLDETHLFIEASWVDHLKQQL 53
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A1X2HID9_SYNRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HID9_SYNRA) HSP 1 Score: 62.4 bits (150), Expect = 1.710e-11 Identity = 26/52 (50.00%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
V+AV GVL+ CD +Q +L+LNK FV+ +LDETHLF++A AV ++++ L
Sbjct: 2 VKAVTGVLLECDTTVKQIVLNLNKTSNFVIEDLDETHLFIDAKAVSQLQYEL 53
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A367KWQ9_RHIST (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KWQ9_RHIST) HSP 1 Score: 62.0 bits (149), Expect = 3.100e-11 Identity = 25/52 (48.08%), Postives = 41/52 (78.85%), Query Frame = 1
Query: 19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
V+AV+GVL+ CD +Q +L+LNK+ F++ +LDETHLF+E+S V ++++ L
Sbjct: 17 VKAVKGVLLECDSTVKQIVLNLNKRGNFIIEDLDETHLFIESSWVDQLKYEL 68
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A1Y2H0E8_9FUNG (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2H0E8_9FUNG) HSP 1 Score: 61.2 bits (147), Expect = 3.820e-11 Identity = 23/52 (44.23%), Postives = 42/52 (80.77%), Query Frame = 1
Query: 19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
V+AV+GV++ CD +Q IL LN+K +F++ +LD+TH+FV+AS ++++R+ +
Sbjct: 2 VKAVKGVVVECDTSVKQIILGLNEKGKFIIEDLDDTHVFVDASCIEQLRFDI 53
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A8H7VWE1_9FUNG (RNA polymerase II transcription factor B subunit 5 n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7VWE1_9FUNG) HSP 1 Score: 63.2 bits (152), Expect = 3.450e-10 Identity = 26/52 (50.00%), Postives = 42/52 (80.77%), Query Frame = 1
Query: 19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
V+AV+GVL+ CD +Q +L+LNK+ FV+ +LDETHLF+E+S V+++++ L
Sbjct: 2 VKAVKGVLLECDSTVKQIVLNLNKRGNFVIEDLDETHLFIESSWVEQLKYEL 53 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig2054.2.1 >prot_P-wetherbeei_contig2054.2.1 ID=prot_P-wetherbeei_contig2054.2.1|Name=mRNA_P-wetherbeei_contig2054.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp MSTGAAVRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAback to top mRNA from alignment at P-wetherbeei_contig2054:3279..3644+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig2054.2.1 ID=mRNA_P-wetherbeei_contig2054.2.1|Name=mRNA_P-wetherbeei_contig2054.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig2054:3279..3644+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig2054:3279..3644+ >mRNA_P-wetherbeei_contig2054.2.1 ID=mRNA_P-wetherbeei_contig2054.2.1|Name=mRNA_P-wetherbeei_contig2054.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig2054:3279..3644+ (Phaeothamnion wetherbeei SAG_119_79)back to top |