mRNA_P-wetherbeei_contig2047.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2047.2.1
Unique NamemRNA_P-wetherbeei_contig2047.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2047.2.1 vs. uniprot
Match: A0A836CA16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA16_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.300e-11
Identity = 42/91 (46.15%), Postives = 52/91 (57.14%), Query Frame = 2 
Query:  464 TLHVDVDIAVDELFCVRDEKSGEVVQGSDGVQSCTHRLRLETALH----PAPVGRQR---FRD------DFEWTVVDIDGWLDGNPPYATA 697
            TLHVDVDI   + F VR+  +  +VQGSD VQ+ THR+RLET       P     +R   F+       D +W V+DID WLDGN  YA A
Sbjct:  657 TLHVDVDIVCRDTFFVRETATDAIVQGSDAVQTRTHRVRLETTQRRTYVPEDFDMERPWEFKKEWDVWTDLDWQVIDIDDWLDGNSMYAPA 747
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BLAST of mRNA_P-wetherbeei_contig2047.2.1 vs. uniprot
Match: A0A836C9B7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9B7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.960e-11
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 2 
Query:  413 DEMLRWLNRMSLEFGKMTLHVDVDIAVDELFCVRDEKSGEVVQGSDGVQSCTHRLRLETA---LHP-------APVGRQRFRDDFEWTVVDIDGWLDGNPPYAT 694
            ++M R++ R S++    T+HVDV     E F VRD  +  +VQGSD + +  H +RLET    LH        + + R+    D +W V+DIDGWL GNP +A+
Sbjct:  230 EDMQRFMRRESVQ----TVHVDVQCICRETFFVRDTATDTIVQGSDAIATRAHHVRLETTQRRLHSIREATLESVLKRELDWSDVDWQVIDIDGWLGGNPLFAS 329
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BLAST of mRNA_P-wetherbeei_contig2047.2.1 vs. uniprot
Match: A0A7S3UY89_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY89_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 9.930e-11
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 2 
Query:  461 MTLHVDVDIAVDELFCVRDEKSGEVVQGSDGVQSCTHRLRLETALHPAPVGRQRFRDDFEWTVVDIDGWLDGNP 682
            +T+ VDVD+   ELF V+D+ +G ++QG++ + +  HRL LE    P     + +R   +W VVD+DGWL+GNP
Sbjct:  129 VTVQVDVDVTCQELFMVKDKPTGVILQGAEALGTVVHRLTLEAVFLPG----EGWRMLEDWLVVDVDGWLEGNP 198
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BLAST of mRNA_P-wetherbeei_contig2047.2.1 vs. uniprot
Match: D7FYL0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL0_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.220e-8
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 2 
Query:  461 MTLHVDVDIAVDELFCVRDEKSGEVVQGSDGVQSCTHRLRLETALHPAPVGRQRFRDDFEWTVVDIDGWLDGN 679
            +T  VDVD+A DE F V+D+++GE++QG        HR+RLE+ L    +  Q       W V+D+D WL GN
Sbjct:  268 VTFQVDVDLACDETFYVKDKETGEIIQGKKESSGRIHRVRLESCL----LMEQAIEQPHIWKVIDLDDWLKGN 336
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BLAST of mRNA_P-wetherbeei_contig2047.2.1 vs. uniprot
Match: A0A836CHA6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHA6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.960e-7
Identity = 34/87 (39.08%), Postives = 44/87 (50.57%), Query Frame = 2 
Query:  464 TLHVDVDIAVDELFCVRDEKSGEVVQGSDGVQSCTHRLRLETALH----PAPVGRQRFR-------DDFEWTVVDIDGWLDGNPPYA 691
            T   +V +   E F V+D  +G +VQGSD  +   HR+RLET       P  V  +           D +W VVDIDGWLDGNP + 
Sbjct:  363 TAQAEVHLVCRETFFVQDAATGAIVQGSDAEKMRMHRIRLETGQRLLQMPKVVSPEAAEGLYKNGFSDVDWKVVDIDGWLDGNPLFG 449
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2047.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CA16_9STRA2.300e-1146.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C9B7_9STRA7.960e-1138.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3UY89_HETAK9.930e-1141.89Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
D7FYL0_ECTSI3.220e-841.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHA6_9STRA1.960e-739.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2047contigP-wetherbeei_contig2047:156..1558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5865.XP_001611457.1
Model size970
Max annot lvl422676|Aconoidasida
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.39e-05
EggNOG OGs2CCY4@1|root,2QXE9@2759|Eukaryota,3YD9N@5794|Apicomplexa,3KCC9@422676|Aconoidasida,3Z62H@5863|Piroplasmida
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186200.6238341-UTR-P-wetherbeei_contig2047:155..5131683186200.6238341-UTR-P-wetherbeei_contig2047:155..513Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2047 156..513 +
1683186200.6547935-UTR-P-wetherbeei_contig2047:1291..15581683186200.6547935-UTR-P-wetherbeei_contig2047:1291..1558Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2047 1292..1558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186200.6353-CDS-P-wetherbeei_contig2047:513..6871683186200.6353-CDS-P-wetherbeei_contig2047:513..687Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2047 514..687 +
1683186200.645323-CDS-P-wetherbeei_contig2047:1120..12911683186200.645323-CDS-P-wetherbeei_contig2047:1120..1291Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2047 1121..1291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2047.2.1prot_P-wetherbeei_contig2047.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2047 514..1291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2047.2.1

>prot_P-wetherbeei_contig2047.2.1 ID=prot_P-wetherbeei_contig2047.2.1|Name=mRNA_P-wetherbeei_contig2047.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MNCRLLSPQLEGSGRLSRDEMLRWLNRMSLEFGKMTLHVDVDIAVDELFC
VRDEKSGEVVQGSDGVQSCTHRLRLETALHPAPVGRQRFRDDFEWTVVDI
DGWLDGNPPYATAL*
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mRNA from alignment at P-wetherbeei_contig2047:156..1558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2047.2.1 ID=mRNA_P-wetherbeei_contig2047.2.1|Name=mRNA_P-wetherbeei_contig2047.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1403bp|location=Sequence derived from alignment at P-wetherbeei_contig2047:156..1558+ (Phaeothamnion wetherbeei SAG_119_79)
CGTCCGCGGCGACGTCCTACCGTCGTGGCTCAAGCCCACCCGCGTCACCT
TTATATCTATGCCCTTTCTCTCTGCGGAGGGACGTGCGGTGAGGGACAGG
GGGCGGTGCAGCCGGCCGCTGTTCGCTTCTGAGTTCCGTCCTCCTATTCG
GAGGCTTTTGCTCTGTGTCGTTTTGAAGTGGAACTCCTTTTGAAGATTGA
TGGCCTCCCTTTCTTTCGTGTACTTGCTCTAGAAGCTCTGTTTCCTGCTA
CCGTTCCGTTGCCATAACAGCGGTCCCGACCTCTGATCACATCCTCCATT
CCCCCTAGTTACCCCGTCTGGCGCTCTCAACCACTCCCAACGAAACCGCC
TGCATCGAATGAACTGCCGGTTGCTGTCGCCGCAGCTGGAGGGCAGCGGC
AGGCTTAGCCGTGACGAGATGCTGCGATGGCTAAACAGAATGAGCTTAGA
GTTTGGGAAGATGACACTCCACGTAGACGTCGACATCGCCGTAGATGAGC
TCTTCTGCGTCCGCGACGAGAAGAGCGGCGAGGTTAGTGCACTTCTGATT
TGAGCTTTTAATGTTTTCAGAGTTTAGACGGGGAGGCGGCGGTTAGTGTT
TTCTTGCTTGCCTTGATTGGTGTATTGGCTCTAGTCTGCGTGGCTGCTGC
TTTCTGGGCGACGCGTTTCCTCTAGGGTTTGATCATGCGCGCTGGGGTTC
TCAGCGCGGTTCCGATGACTGTCCTGATCCGGTGGCGGCGGTGACTGGCT
TGTGCATCGTTTGCACGTCAGGCCCCTGCTTCTCTCGTCCAGCTGGCACT
GGATTGCTGGGGCCTCGATTGGAGGGCGCGAGAGCGCTTAACTTCAGCGT
ATGGTATACTGTATCCGTTTTGTCGCGCACCCTTATCCCGTCTTTTTTGC
TTAGTAAAGCTTCCGTCTTGCTACTTATCCTACCTCTTCCCTCATGCTGG
GGACCAAAAACGCAGGTGGTGCAGGGCTCCGACGGCGTCCAGAGCTGCAC
GCATCGCCTCCGGCTCGAGACGGCGTTGCATCCGGCGCCCGTCGGCCGCC
AGCGCTTCCGCGATGACTTTGAGTGGACGGTCGTCGACATCGACGGGTGG
CTCGACGGAAACCCACCCTACGCCACTGCTTTGTGAAGGAGGAGGAGGGA
ATGGTTGTTTGTTCTCGCTGGACTGTATCTTTGGAAGGCGCAACGTGGCG
CGGCCGCTGGTACTGGTGGGCGGCGCGAAGCATTCGACTAGCTATGTAAA
CACGTATATGCGGCTGATCTAACCACTCCTGCCTCTCTGATCTTGGGTGG
TCTCCAAATTCTGGGGAGGCGGCTGTAGGAGGCAGGATGCAGCGCTCCAG
CGTACGGCGACGCAGCTGCGAGTAAGAGCCCTAGAATCCCGTTTCAGTAC
CAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2047:156..1558+

>mRNA_P-wetherbeei_contig2047.2.1 ID=mRNA_P-wetherbeei_contig2047.2.1|Name=mRNA_P-wetherbeei_contig2047.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig2047:156..1558+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACTGCCGGTTGCTGTCGCCGCAGCTGGAGGGCAGCGGCAGGCTTAG
CCGTGACGAGATGCTGCGATGGCTAAACAGAATGAGCTTAGAGTTTGGGA
AGATGACACTCCACGTAGACGTCGACATCGCCGTAGATGAGCTCTTCTGC
GTCCGCGACGAGAAGAGCGGCGAGGTGGTGCAGGGCTCCGACGGCGTCCA
GAGCTGCACGCATCGCCTCCGGCTCGAGACGGCGTTGCATCCGGCGCCCG
TCGGCCGCCAGCGCTTCCGCGATGACTTTGAGTGGACGGTCGTCGACATC
GACGGGTGGCTCGACGGAAACCCACCCTACGCCACTGCTTTGTGA
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