mRNA_P-wetherbeei_contig20464.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20464.1.1
Unique NamemRNA_P-wetherbeei_contig20464.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20464.1.1 vs. uniprot
Match: A0A7C5AYT5_9BACT (Uncharacterized protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7C5AYT5_9BACT)

HSP 1 Score: 197 bits (502), Expect = 1.280e-61
Identity = 97/178 (54.49%), Postives = 115/178 (64.61%), Query Frame = 1
Query:    1 LIPAGYMMKRVAAGAPAVANPAVMRICSVSDCISEDFADWISRWKHNGYWLFDSPAVISEIASAAGVDTSGLTTFYYEVHEREFDDDSSSWSPLEPGLPFPVNVSPPENPTLLGFDVCSFSAGSAPECSPLSCNALANEIPVNSHCLLDSLDQTIALLETGAFTNSEPGPYRIFAVYS 534
            +IPAGYM KRV      +    V  I SVS CIS+DFAD+I  WKHNG W FDSP VI ++A    +  +G T FYYEV+E+EFDD    W P E    FP N+  PE   L GFDV +    ++PECSPLSCN+L NEI  NSHCLL   +    L+ETG F NSEPGPYRIFAVY+
Sbjct:    1 MIPAGYMAKRVVRKPDWLKANGVEDIYSVSGCISKDFADYIKFWKHNGCWFFDSPEVIDQVAREQSIGLAGTTMFYYEVYEQEFDDGKGQWCPCERERSFPTNIRTPEKKILAGFDVVNSVTRNSPECSPLSCNSLTNEIQTNSHCLLADFETAKQLIETGKFNNSEPGPYRIFAVYT 178          
BLAST of mRNA_P-wetherbeei_contig20464.1.1 vs. uniprot
Match: A0A7Y5FEE4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5FEE4_9BACT)

HSP 1 Score: 195 bits (496), Expect = 1.400e-60
Identity = 94/177 (53.11%), Postives = 117/177 (66.10%), Query Frame = 1
Query:    1 LIPAGYMMKRVAAGAPAVANPAVMRICSVSDCISEDFADWISRWKHNGYWLFDSPAVISEIASAAGVDTSGLTTFYYEVHEREFDDDSSSWSPLEPGLPFPVNVSPPENPTLLGFDVCSFSAGSAPECSPLSCNALANEIPVNSHCLLDSLDQTIALLETGAFTNSEPGPYRIFAVY 531
            +IPAGYM KRVA G      PAV  I SVS CISEDFAD++   ++NGYW FD+P +I E+A    +D   +T FYY+V+E EFD+ S  W+PL P   F  NV  P    + GFDV +FS  + PECSPLSCN LA E+ VN HCL ++ ++    LE G F NSEPGP+RIFAVY
Sbjct:    1 MIPAGYMRKRVATGNLDFYGPAVKEIYSVSGCISEDFADYVEFCRYNGYWFFDAPRIIEELAEEHHIDLFAMTLFYYDVYEEEFDEHSRRWTPLVPDEAFSTNVVVPREKKIKGFDVVTFSVKTMPECSPLSCNGLAKEVSVNKHCLFNTFEEAKHALEKGLFDNSEPGPFRIFAVY 177          
BLAST of mRNA_P-wetherbeei_contig20464.1.1 vs. uniprot
Match: A0A0S8DJJ9_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_40 TaxID=1703389 RepID=A0A0S8DJJ9_9PROT)

HSP 1 Score: 194 bits (493), Expect = 3.190e-60
Identity = 94/178 (52.81%), Postives = 118/178 (66.29%), Query Frame = 1
Query:    1 LIPAGYMMKRVAAGAPAVANPAVMRICSVSDCISEDFADWISRWKHNGYWLFDSPAVISEIASAAGVDTSGLTTFYYEVHEREFDDDSSSWSPLEPGLPFPVNVSPPENPTLLGFDVCSFSAGSAPECSPLSCNALANEIPVNSHCLLDSLDQTIALLETGAFTNSEPGPYRIFAVYS 534
            + PAGY+ K +   A  + N  V  I SVS C+S  F D++  W+HNGYWLFDSPAVI EIA+  GVD SG+  FYYEVH  +FD D+ +WS        P  V  P    L GFDV SF+A +APECSPLSCN LA +I VN HCLL +L++   LLETG F + EPGPYR+FA+++
Sbjct:    1 MTPAGYLAKNIRTEAGWLENDVVEDIWSVSACLSPAFCDFVPYWRHNGYWLFDSPAVIGEIAAEEGVDLSGMRMFYYEVHGEQFDCDAGTWSVFAREASLPTRVQIPARKQLEGFDVVSFAAQTAPECSPLSCNGLARDIAVNKHCLLATLEEAKTLLETGCFKDCEPGPYRVFAIHT 178          
BLAST of mRNA_P-wetherbeei_contig20464.1.1 vs. uniprot
Match: A0A0A1PUJ2_9BACT (Uncharacterized protein n=1 Tax=bacterium YEK0313 TaxID=1522316 RepID=A0A0A1PUJ2_9BACT)

HSP 1 Score: 194 bits (492), Expect = 7.530e-60
Identity = 95/177 (53.67%), Postives = 121/177 (68.36%), Query Frame = 1
Query:    1 LIPAGYMMKRVAAGAPAVANPAVMRICSVSDCISEDFADWISRWKHNGYWLFDSPAVISEIASAAGVDTSGLTTFYYEVHEREFDDDSSSWSPLEPGLPFPVNVSPPENPTLLGFDVCSFSAGSAPECSPLSCNALANEIPVNSHCLLDSLDQTIALLETGAFTNSEPGPYRIFAVY 531
            L+PAGYM+KRVAA    +A P V  I S+S CIS DFAD+I  W+HNG+WLFD+P  ++EIA+A G+D SGLT FYYE+  + F +D+ +WS +     F   V PP +P+L G+DV +FS  +  ECSPLSCN LA    VN HCL  SLD   A L+ G F  SEPGP+RIFAV+
Sbjct:    6 LLPAGYMLKRVAARPGWLAAPGVDDIYSLSGCISADFADYIGHWRHNGFWLFDNPRAMAEIAAADGLDLSGLTLFYYELFPQAFHEDTRAWSAIAADPAFVTAVEPPPSPSLAGYDVATFSQNNKAECSPLSCNHLAGRAAVNRHCLFASLDAARAALDGGLFDRSEPGPFRIFAVH 182          
BLAST of mRNA_P-wetherbeei_contig20464.1.1 vs. uniprot
Match: A0A2L1GMF3_9DELT (Uncharacterized protein n=2 Tax=Desulfobulbus oralis TaxID=1986146 RepID=A0A2L1GMF3_9DELT)

HSP 1 Score: 193 bits (490), Expect = 9.100e-60
Identity = 94/178 (52.81%), Postives = 118/178 (66.29%), Query Frame = 1
Query:    1 LIPAGYMMKRVAAGAPAVANPAVMRICSVSDCISEDFADWISRWKHNGYWLFDSPAVISEIASAAGVDTSGLTTFYYEVHEREFDDDSSSWSPLEPGLPFPVNVSPPENPTLLGFDVCSFSAGSAPECSPLSCNALANEIPVNSHCLLDSLDQTIALLETGAFTNSEPGPYRIFAVYS 534
            +IPAGYM K VAA    +    V  I SVS+CIS+DFAD+I+ WKHNGYWLFDSP +I  +A    +D      F+YE++E E+D+D  SW+P  P   F  +V  P    L G+DV SF   ++PECSPLSCN+LA+EI  N HCLL + ++   LLE G F NSEPG YRIFAVYS
Sbjct:    1 MIPAGYMAKHVAARPDGLKANQVKDIYSVSNCISDDFADYINFWKHNGYWLFDSPEIIRSVAKEHSIDIINARLFFYEIYEYEYDEDEKSWNPFVPESSFETHVIQPVTKKLEGYDVVSFYVHTSPECSPLSCNSLASEIETNEHCLLPTFEKAKDLLEQGKFANSEPGSYRIFAVYS 178          
BLAST of mRNA_P-wetherbeei_contig20464.1.1 vs. uniprot
Match: A0A0S8EX81_9GAMM (Uncharacterized protein n=1 Tax=Thiotrichales bacterium SG8_50 TaxID=1703416 RepID=A0A0S8EX81_9GAMM)

HSP 1 Score: 192 bits (488), Expect = 1.830e-59
Identity = 95/177 (53.67%), Postives = 119/177 (67.23%), Query Frame = 1
Query:    1 LIPAGYMMKRVAAGAPAVANPAVMRICSVSDCISEDFADWISRWKHNGYWLFDSPAVISEIASAAGVDTSGLTTFYYEVHEREFDDDSSSWSPLEPGLPFPVNVSPPENPTLLGFDVCSFSAGSAPECSPLSCNALANEIPVNSHCLLDSLDQTIALLETGAFTNSEPGPYRIFAVY 531
            +IPAGYM K V A    +    V  I SVS+C+S+DFAD+I+ WKHNGYWLF+SP  I EIA    +D +    F+YEV+E E+D+D   W P  P   F   V+ P+  TL G+DV +F A ++PECSPLSCN+LA+EI  N HCLL S ++   LLE G F NSEPGPYRIFAVY
Sbjct:    1 MIPAGYMAKHVVARPDWLNANRVEDIYSVSNCVSDDFADYINYWKHNGYWLFNSPETIREIAEEHFIDLTDTKLFFYEVYELEYDEDEKLWKPFAPESSFNTQVTQPDAKTLEGYDVVTFYAHTSPECSPLSCNSLASEIETNRHCLLPSFERAKKLLEKGKFGNSEPGPYRIFAVY 177          
BLAST of mRNA_P-wetherbeei_contig20464.1.1 vs. uniprot
Match: A0A3S0Q5X2_9GAMM (Uncharacterized protein n=2 Tax=Dyella choica TaxID=1927959 RepID=A0A3S0Q5X2_9GAMM)

HSP 1 Score: 189 bits (481), Expect = 2.560e-58
Identity = 88/178 (49.44%), Postives = 121/178 (67.98%), Query Frame = 1
Query:    1 LIPAGYMMKRVAAGAPAVANPAVMRICSVSDCISEDFADWISRWKHNGYWLFDSPAVISEIASAAGVDTSGLTTFYYEVHEREFDDDSSSWSPLEPGLPFPVNVSPPENPTLLGFDVCSFSAGSAPECSPLSCNALANEIPVNSHCLLDSLDQTIALLETGAFTNSEPGPYRIFAVYS 534
            +IP GY+ K+VA+    +    V  I S+S+C+S+DF D++  WKHNGYWLFDSP +I+EI + A +       FYYE +E ++D+D+ +WS   P L F   ++ P+N  L GFD+ SFS G+APECSPLSCNA A+E+  N HCLL S ++  A++E G+F   EPGPYRI AVYS
Sbjct:    1 MIPLGYLYKQVASRPEWLKAAQVTDIYSLSNCVSKDFTDYVRYWKHNGYWLFDSPDIIAEIVNDASLSMEQQKLFYYEAYELQYDEDAQTWSKFTPELSFTTEIATPKNRRLEGFDITSFSLGNAPECSPLSCNARADELLTNEHCLLGSFEEAKAVIEQGSFHRCEPGPYRIIAVYS 178          
BLAST of mRNA_P-wetherbeei_contig20464.1.1 vs. uniprot
Match: UPI00164C8236 (hypothetical protein n=1 Tax=Undibacterium TaxID=401469 RepID=UPI00164C8236)

HSP 1 Score: 186 bits (473), Expect = 3.690e-57
Identity = 82/180 (45.56%), Postives = 122/180 (67.78%), Query Frame = 1
Query:    1 LIPAGYMMKRVAAGAPAVANPAVMRICSVSDCISEDFADWISRWKHNGYWLFDSPAVISEIASAAGVDTSGLTTFYYEVHEREFDDDSSSWSPLEPGLPFPVNVSPPENPTLLGFDVCSFSAGSAPECSPLSCNALANEIPVNSHCLLDSLDQTIALLETGAFTNSEPGPYRIFAVYSFS 540
            ++P GY+ K VA     +    V  I ++S C+SEDFAD+ + W+HNG+WLFDSP+++ E+A+   +D S L  FYYE +E +++D+++ W    P   F  N+ PP+N  L GFDV +F +G++PECSPLSCN++A  IP N HCL D+ ++  + +E  AF N+EPGPYRI AVY+ +
Sbjct:    1 MLPIGYLYKNVAKRPDWLDVETVDDIYALSGCVSEDFADYTNYWRHNGFWLFDSPSIMKELANEHSIDLSALCLFYYEAYEVQYNDETNLWEQFFPEASFVTNIQPPKNNRLEGFDVVNFCSGTSPECSPLSCNSIAKTIPTNRHCLFDTFEEAKSAIENSAFENAEPGPYRIIAVYTIN 180          
BLAST of mRNA_P-wetherbeei_contig20464.1.1 vs. uniprot
Match: UPI00196A1B45 (hypothetical protein n=1 Tax=Curvibacter sp. PAE-UM TaxID=1714344 RepID=UPI00196A1B45)

HSP 1 Score: 186 bits (472), Expect = 4.330e-57
Identity = 87/172 (50.58%), Postives = 115/172 (66.86%), Query Frame = 1
Query:   19 MMKRVAAGAPAVANPAVMRICSVSDCISEDFADWISRWKHNGYWLFDSPAVISEIASAAGVDTSGLTTFYYEVHEREFDDDSSSWSPLEPGLPFPVNVSPPENPTLLGFDVCSFSAGSAPECSPLSCNALANEIPVNSHCLLDSLDQTIALLETGAFTNSEPGPYRIFAVYS 534
            M K+VA     +  P V  I S+S C+S+DFAD+I+ W+HNGYWLFDSP +I EIA A  +   GL+ FYYE HE ++D D   W+P  P   F  N+  P++ TL GFDV +F   ++PECSPLSCN+LA  +  N HCLL + D+   L+E G FT++EPGPYRI AVY+
Sbjct:    1 MYKQVARRPDWIKAPNVGDIYSLSGCVSKDFADYINFWRHNGYWLFDSPRIIEEIALANSIPLDGLSLFYYEAHEEQYDADDCVWTPFAPEQSFETNIEIPQSKTLQGFDVTTFLVQTSPECSPLSCNSLAEGVATNEHCLLATFDEAQELVEKGVFTDAEPGPYRIIAVYT 172          
BLAST of mRNA_P-wetherbeei_contig20464.1.1 vs. uniprot
Match: A0A7C5JET3_9BACT (Uncharacterized protein n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7C5JET3_9BACT)

HSP 1 Score: 185 bits (469), Expect = 1.400e-56
Identity = 85/178 (47.75%), Postives = 119/178 (66.85%), Query Frame = 1
Query:    1 LIPAGYMMKRVAAGAPAVANPAVMRICSVSDCISEDFADWISRWKHNGYWLFDSPAVISEIASAAGVDTSGLTTFYYEVHEREFDDDSSSWSPLEPGLPFPVNVSPPENPTLLGFDVCSFSAGSAPECSPLSCNALANEIPVNSHCLLDSLDQTIALLETGAFTNSEPGPYRIFAVYS 534
            ++P GYM K V+     +    V  I SVS CISEDFA+WI  WKHNGYW FDSP VI ++A    +   G+T F+Y  +E+E+D D   W+   P   F  +V  P++  + G+D+ SFS G++ ECSPLSCN++A +I VNSHCLLD+ +Q + +LE+G+F N EPGPYRI+ V++
Sbjct:    1 MVPVGYMYKIVSNKPDWLETNQVSDIYSVSGCISEDFAEWIKYWKHNGYWFFDSPKVIEDLAQEQNLSLKGMTLFFYLAYEQEWDTDEEQWNLYSPEESFSTDVVLPQSSKIEGYDIVSFSFGNSAECSPLSCNSMAQKIKVNSHCLLDTFEQAMLILESGSFKNCEPGPYRIYEVHT 178          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20464.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C5AYT5_9BACT1.280e-6154.49Uncharacterized protein n=1 Tax=Nitrospirae bacter... [more]
A0A7Y5FEE4_9BACT1.400e-6053.11Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A0S8DJJ9_9PROT3.190e-6052.81Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A0A1PUJ2_9BACT7.530e-6053.67Uncharacterized protein n=1 Tax=bacterium YEK0313 ... [more]
A0A2L1GMF3_9DELT9.100e-6052.81Uncharacterized protein n=2 Tax=Desulfobulbus oral... [more]
A0A0S8EX81_9GAMM1.830e-5953.67Uncharacterized protein n=1 Tax=Thiotrichales bact... [more]
A0A3S0Q5X2_9GAMM2.560e-5849.44Uncharacterized protein n=2 Tax=Dyella choica TaxI... [more]
UPI00164C82363.690e-5745.56hypothetical protein n=1 Tax=Undibacterium TaxID=4... [more]
UPI00196A1B454.330e-5750.58hypothetical protein n=1 Tax=Curvibacter sp. PAE-U... [more]
A0A7C5JET3_9BACT1.400e-5647.75Uncharacterized protein n=1 Tax=Saprospiraceae bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20464contigP-wetherbeei_contig20464:360..902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog78398.KS43_02255
Model size543
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.41e-49
EggNOG OGs2AIFV@1|root,318XE@2|Bacteria,1QF2N@1224|Proteobacteria,1TC4K@1236|Gammaproteobacteria,1MRI5@122277|Pectobacterium
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186200.5409024-CDS-P-wetherbeei_contig20464:359..8841683186200.5409024-CDS-P-wetherbeei_contig20464:359..884Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20464 360..884 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186200.5517273-UTR-P-wetherbeei_contig20464:884..9021683186200.5517273-UTR-P-wetherbeei_contig20464:884..902Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20464 885..902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20464.1.1prot_P-wetherbeei_contig20464.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20464 360..884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20464.1.1

>prot_P-wetherbeei_contig20464.1.1 ID=prot_P-wetherbeei_contig20464.1.1|Name=mRNA_P-wetherbeei_contig20464.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
MMKRVAAGAPAVANPAVMRICSVSDCISEDFADWISRWKHNGYWLFDSPA
VISEIASAAGVDTSGLTTFYYEVHEREFDDDSSSWSPLEPGLPFPVNVSP
PENPTLLGFDVCSFSAGSAPECSPLSCNALANEIPVNSHCLLDSLDQTIA
LLETGAFTNSEPGPYRIFAVYSFS*
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mRNA from alignment at P-wetherbeei_contig20464:360..902-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20464.1.1 ID=mRNA_P-wetherbeei_contig20464.1.1|Name=mRNA_P-wetherbeei_contig20464.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig20464:360..902- (Phaeothamnion wetherbeei SAG_119_79)
TTGATCCCTGCGGGCTACATGATGAAGCGTGTGGCCGCCGGCGCCCCCGC CGTCGCAAATCCGGCCGTCATGCGCATCTGCTCCGTCAGCGACTGCATCT CCGAAGACTTCGCCGACTGGATTTCCCGCTGGAAGCACAATGGCTACTGG CTGTTCGACAGCCCTGCAGTCATCTCCGAAATCGCATCCGCCGCCGGCGT CGACACATCCGGACTGACGACGTTTTACTACGAGGTCCACGAGCGAGAGT TCGACGACGACTCCAGTTCATGGAGTCCTCTCGAGCCCGGTCTGCCGTTT CCGGTCAATGTCAGTCCGCCAGAAAACCCGACGCTTCTCGGATTTGACGT GTGCTCGTTTTCCGCGGGTTCAGCCCCGGAATGTTCGCCGTTGTCTTGCA ATGCGTTGGCAAACGAAATTCCCGTAAACAGTCACTGCCTGCTCGACTCG CTTGACCAGACAATCGCTCTTCTCGAAACCGGCGCGTTCACCAACAGCGA GCCCGGGCCCTACCGGATATTCGCGGTCTATTCATTCAGCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20464:360..902-

>mRNA_P-wetherbeei_contig20464.1.1 ID=mRNA_P-wetherbeei_contig20464.1.1|Name=mRNA_P-wetherbeei_contig20464.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig20464:360..902- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGAAGCGTGTGGCCGCCGGCGCCCCCGCCGTCGCAAATCCGGCCGT
CATGCGCATCTGCTCCGTCAGCGACTGCATCTCCGAAGACTTCGCCGACT
GGATTTCCCGCTGGAAGCACAATGGCTACTGGCTGTTCGACAGCCCTGCA
GTCATCTCCGAAATCGCATCCGCCGCCGGCGTCGACACATCCGGACTGAC
GACGTTTTACTACGAGGTCCACGAGCGAGAGTTCGACGACGACTCCAGTT
CATGGAGTCCTCTCGAGCCCGGTCTGCCGTTTCCGGTCAATGTCAGTCCG
CCAGAAAACCCGACGCTTCTCGGATTTGACGTGTGCTCGTTTTCCGCGGG
TTCAGCCCCGGAATGTTCGCCGTTGTCTTGCAATGCGTTGGCAAACGAAA
TTCCCGTAAACAGTCACTGCCTGCTCGACTCGCTTGACCAGACAATCGCT
CTTCTCGAAACCGGCGCGTTCACCAACAGCGAGCCCGGGCCCTACCGGAT
ATTCGCGGTCTATTCATTCAGCTAA
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