mRNA_P-wetherbeei_contig20461.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20461.1.1
Unique NamemRNA_P-wetherbeei_contig20461.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20461.1.1 vs. uniprot
Match: A0A1X2H908_SYNRA (Thioredoxin n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H908_SYNRA)

HSP 1 Score: 68.9 bits (167), Expect = 7.410e-14
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 MREVRDAADFATLINSGPLVVLDFTATWCGPCKRVSPLFDALAPRYPDCTFAKV 162
            MREV+D  +F  LI S  +  +DFTATWCGPCK + P+F+ LA  YPD T  KV
Sbjct:    1 MREVKDLEEFNELIKSDKVTAVDFTATWCGPCKVIGPIFEKLAEEYPDYTCIKV 54          
BLAST of mRNA_P-wetherbeei_contig20461.1.1 vs. uniprot
Match: A0A7S2TE80_PROMC (Thioredoxin n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TE80_PROMC)

HSP 1 Score: 67.4 bits (163), Expect = 3.070e-13
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 1
Query:    1 MREVRDAADFATLINSGPLVVLDFTATWCGPCKRVSPLFDALAPRYPDCTFAKV 162
            +R++    +F TL++ G +V++DFTATWCGPCK +SP F+ L+  Y D TF KV
Sbjct:    2 VRQIATLEEFNTLVSEGKVVMIDFTATWCGPCKMISPEFERLSGEYTDITFVKV 55          
BLAST of mRNA_P-wetherbeei_contig20461.1.1 vs. uniprot
Match: A0A4D9D704_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D704_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.050e-12
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    1 MREVRDAADFATLINSGPLVVLDFTATWCGPCKRVSPLFDALAPRYPDCTFAKV 162
            ++E+   A+   ++ SG LVV+DFTA+WCGPC+  +P F+A+A RYPD  FAKV
Sbjct:    2 VQEITSGAELRRMVGSGRLVVIDFTASWCGPCRMAAPQFEAMARRYPDVVFAKV 55          
BLAST of mRNA_P-wetherbeei_contig20461.1.1 vs. uniprot
Match: A0A4R0RA33_9APHY (Thioredoxin n=1 Tax=Steccherinum ochraceum TaxID=92696 RepID=A0A4R0RA33_9APHY)

HSP 1 Score: 65.9 bits (159), Expect = 1.240e-12
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 1
Query:   25 DFATLINSGPLVVLDFTATWCGPCKRVSPLFDALAPRYPDCTFAKV 162
            +F TLINSG +VV+DF ATWCGPC+ +SP+F+ LA ++P+  F KV
Sbjct:   11 EFQTLINSGKVVVVDFWATWCGPCRVISPIFEKLAAQFPNIEFRKV 56          
BLAST of mRNA_P-wetherbeei_contig20461.1.1 vs. uniprot
Match: A0A507FKZ5_9FUNG (Thioredoxin domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FKZ5_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 1.740e-12
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   10 VRDAADFATLINSGPLVVLDFTATWCGPCKRVSPLFDALAPRYPDCTFAKV 162
            +   ++F   IN   L V+DFTATWCGPCK V+P F+ALA ++P+C F KV
Sbjct:    8 ITSESEFTRYINGSKLTVVDFTATWCGPCKAVAPRFEALAGKFPNCNFIKV 58          
BLAST of mRNA_P-wetherbeei_contig20461.1.1 vs. uniprot
Match: A0A370PLY1_ASPPH (Thioredoxin n=8 Tax=Aspergillus TaxID=5052 RepID=A0A370PLY1_ASPPH)

HSP 1 Score: 65.1 bits (157), Expect = 2.490e-12
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   10 VRDAADFATLINSGPLVVLDFTATWCGPCKRVSPLFDALA--PRYPDCTFAKV 162
            +   +DF TLINSG +V++DF ATWCGPCK +SP F+ LA  P +    FAKV
Sbjct:    6 IESISDFRTLINSGDVVIIDFWATWCGPCKMISPFFEQLASRPEFSAIKFAKV 58          
BLAST of mRNA_P-wetherbeei_contig20461.1.1 vs. uniprot
Match: A0A7S2T243_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A7S2T243_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 2.760e-12
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   10 VRDAADFATLINSGPLVVLDFTATWCGPCKRVSPLFDALAPRYPDCTFAKV 162
            ++  A F  ++  G  VV+DFTATWCGPC+R++P F+ L+ +YP  TF KV
Sbjct:   31 IKSEAQFNDIVAKGGAVVIDFTATWCGPCQRIAPFFEELSTKYPSVTFVKV 81          
BLAST of mRNA_P-wetherbeei_contig20461.1.1 vs. uniprot
Match: C1EA57_MICCC (Thioredoxin n=2 Tax=Micromonas TaxID=38832 RepID=C1EA57_MICCC)

HSP 1 Score: 64.7 bits (156), Expect = 3.450e-12
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 MREVRDAADFATLINSGPLVVLDFTATWCGPCKRVSPLFDALAPRYPDCTFAKV 162
            ++ +  A +FATL      V++DFTA+WCGPCK++ P F+ LA +YPD  F K+
Sbjct:    2 VKMIESAEEFATLKKGDKPVLVDFTASWCGPCKKIGPFFEELAAKYPDVVFVKI 55          
BLAST of mRNA_P-wetherbeei_contig20461.1.1 vs. uniprot
Match: A0A5B8MYQ1_9CHLO (Thioredoxin n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MYQ1_9CHLO)

HSP 1 Score: 64.7 bits (156), Expect = 4.480e-12
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   10 VRDAADFATLINSGPLVVLDFTATWCGPCKRVSPLFDALAPRYPDCTFAKV 162
            ++    F  +I +G  VV+DFTATWCGPC+R++P F+ L+ +YP  TF KV
Sbjct:   16 IKSEEQFNEIIGAGKPVVIDFTATWCGPCQRIAPFFEELSTKYPSVTFVKV 66          
BLAST of mRNA_P-wetherbeei_contig20461.1.1 vs. uniprot
Match: A0A1L0D2J4_9ASCO (CIC11C00000005658 n=2 Tax=[Candida] intermedia TaxID=45354 RepID=A0A1L0D2J4_9ASCO)

HSP 1 Score: 65.1 bits (157), Expect = 5.790e-12
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    7 EVRDAADFATLI-NSGPLVVLDFTATWCGPCKRVSPLFDALAPRYPDCTFAKV 162
            EVRD   FA+++ N     V+DF ATWCGPCK ++P+FDALA R P+  FA+V
Sbjct:   36 EVRDLKQFASIVANKEKATVVDFYATWCGPCKAIAPVFDALAERVPEAQFARV 88          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20461.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X2H908_SYNRA7.410e-1455.56Thioredoxin n=1 Tax=Syncephalastrum racemosum TaxI... [more]
A0A7S2TE80_PROMC3.070e-1350.00Thioredoxin n=1 Tax=Prorocentrum micans TaxID=2945... [more]
A0A4D9D704_9STRA1.050e-1251.85Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A4R0RA33_9APHY1.240e-1258.70Thioredoxin n=1 Tax=Steccherinum ochraceum TaxID=9... [more]
A0A507FKZ5_9FUNG1.740e-1252.94Thioredoxin domain-containing protein n=1 Tax=Chyt... [more]
A0A370PLY1_ASPPH2.490e-1254.72Thioredoxin n=8 Tax=Aspergillus TaxID=5052 RepID=A... [more]
A0A7S2T243_9CHLO2.760e-1249.02Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
C1EA57_MICCC3.450e-1246.30Thioredoxin n=2 Tax=Micromonas TaxID=38832 RepID=C... [more]
A0A5B8MYQ1_9CHLO4.480e-1249.02Thioredoxin n=1 Tax=Chloropicon primus TaxID=17642... [more]
A0A1L0D2J4_9ASCO5.790e-1254.72CIC11C00000005658 n=2 Tax=[Candida] intermedia Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20461contigP-wetherbeei_contig20461:37..198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5061.CADANGAP00013717
PFAMsThioredoxin
Model size162
Max annot lvl4751|Fungi
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.09e-13
EggNOG OGsCOG0526@1|root,KOG0907@2759|Eukaryota,3A886@33154|Opisthokonta,3P5A0@4751|Fungi,3QX8W@4890|Ascomycota,20IBP@147545|Eurotiomycetes
DescriptionBelongs to the thioredoxin family
Cds size162
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186200.499208-CDS-P-wetherbeei_contig20461:36..1981683186200.499208-CDS-P-wetherbeei_contig20461:36..198Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20461 37..198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20461.1.1prot_P-wetherbeei_contig20461.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20461 37..198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20461.1.1

>prot_P-wetherbeei_contig20461.1.1 ID=prot_P-wetherbeei_contig20461.1.1|Name=mRNA_P-wetherbeei_contig20461.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=54bp
MREVRDAADFATLINSGPLVVLDFTATWCGPCKRVSPLFDALAPRYPDCT
FAKV
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mRNA from alignment at P-wetherbeei_contig20461:37..198-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20461.1.1 ID=mRNA_P-wetherbeei_contig20461.1.1|Name=mRNA_P-wetherbeei_contig20461.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig20461:37..198- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTGAGGTTCGCGACGCCGCCGACTTTGCAACCCTCATCAACAGCGG CCCTCTCGTCGTATTGGACTTCACCGCGACATGGTGCGGCCCGTGCAAGC GGGTATCGCCCCTCTTTGATGCTCTGGCACCAAGATATCCTGACTGCACG TTTGCAAAGGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20461:37..198-

>mRNA_P-wetherbeei_contig20461.1.1 ID=mRNA_P-wetherbeei_contig20461.1.1|Name=mRNA_P-wetherbeei_contig20461.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig20461:37..198- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTGAGGTTCGCGACGCCGCCGACTTTGCAACCCTCATCAACAGCGG
CCCTCTCGTCGTATTGGACTTCACCGCGACATGGTGCGGCCCGTGCAAGC
GGGTATCGCCCCTCTTTGATGCTCTGGCACCAAGATATCCTGACTGCACG
TTTGCAAAGGTT
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