mRNA_P-wetherbeei_contig20460.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20460.2.1
Unique NamemRNA_P-wetherbeei_contig20460.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20460.2.1 vs. uniprot
Match: A0A7X9AHD2_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AHD2_9BURK)

HSP 1 Score: 329 bits (844), Expect = 1.780e-106
Identity = 162/251 (64.54%), Postives = 197/251 (78.49%), Query Frame = 1
Query:    1 AEAMQAASLAPALGLEASLSVFTSSFDLPHDREQKVMHLDPLAADFPAQLEKLLGSAPEPAQLDNYKAMIEEGRGAGLPLEKATLRADDFFPEKNWEVLALTGYMGPDPYSGLPGVEKVSDDTYRVTVRLMSNRSDKRATFTLRLMKDWQSSQLLFSPLLNRFLGGIDYQTRPVKISDSGRIRNELQTLCAEALEYPGGTSLRLFFDRIPAAVIAPERQQRLLEVLRWYRKRHPIWFSWLELVPPGATVPE 753
            AEA+QAA+L PALGL+ S+ VFTS F L ++REQ+VM LDP A DFPA LE LLGS P+ A L +Y+ MI EG  AGLPLE+  L+ADDFFPEK W  LAL+GYM PDPY+G PG  +V    ++VTVRL+S  ++K  TFTLR M+D Q  +L+F+PLLNRFL G D+Q R VKISDSGRIRNELQTLCAEALE+PG   +R++FDRIP AVI+ E+Q RLLEVLRWY+ RHP WF+WLE+V PGA+ PE
Sbjct:  360 AEAVQAATLGPALGLDTSMCVFTSKFQLSYEREQRVMTLDPEAEDFPANLEALLGSPPDEATLADYRRMIAEGLDAGLPLERKVLKADDFFPEKRWHSLALSGYMCPDPYTGTPGAVEVQPGIWQVTVRLVSETAEKLVTFTLRFMEDMQEQRLVFNPLLNRFLWGEDFQQRAVKISDSGRIRNELQTLCAEALEFPGQNRIRVYFDRIPPAVISCEQQVRLLEVLRWYKSRHPFWFAWLEIVGPGASAPE 610          
BLAST of mRNA_P-wetherbeei_contig20460.2.1 vs. uniprot
Match: A0A524JZL4_9BACT (Uncharacterized protein n=1 Tax=Chrysiogenales bacterium TaxID=2528039 RepID=A0A524JZL4_9BACT)

HSP 1 Score: 301 bits (771), Expect = 1.150e-95
Identity = 146/245 (59.59%), Postives = 189/245 (77.14%), Query Frame = 1
Query:    1 AEAMQAASLAPALGLEASLSVFTSSFDLPHDREQKVMHLDPLAADFPAQLEKLLGSAPEPAQLDNYKAMIEEGRGAGLPLEKATLRADDFFPEKNWEVLALTGYMGPDPYSGLPGVEKVSDDTYRVTVRLMSNRSDKRATFTLRLMKDWQSSQLLFSPLLNRFLGGIDYQTRPVKISDSGRIRNELQTLCAEALEYPGGTSLRLFFDRIPAAVIAPERQQRLLEVLRWYRKRHPIWFSWLELVPP 735
            AEA+QAASLAP LGL A +S FTS+F++P+ RE+ VM LDP A DF A+L ++LG   + A    ++AMIE+   AG+P+ K ++ ADDFFPEK W+VLA++GYM PDPYSG PGVE+V    YRVTVRL  +R DKR TFTLRL +  + S L+F+PLLNRF+GG DY+ RPV+ISDSGRIRNELQTLC+EALE+P    +R+ F+RIP  VI+P  Q +LLE+LRWY+K HP+WF+WL++  P
Sbjct:  352 AEAIQAASLAPMLGLAAYISTFTSTFEVPYHRERLVMGLDPQAGDFTARLGQVLGRDVDAATAARFRAMIEDASQAGIPVHKPSVEADDFFPEKKWDVLAVSGYMCPDPYSGAPGVEEVEPGLYRVTVRLAGSRGDKRITFTLRLGETLEQSWLVFNPLLNRFMGGEDYEHRPVRISDSGRIRNELQTLCSEALEFPEQDHIRVHFERIPPEVISPAYQVKLLEILRWYKKHHPLWFAWLDIAAP 596          
BLAST of mRNA_P-wetherbeei_contig20460.2.1 vs. uniprot
Match: A0A1V5R0K2_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium ADurb.Bin340 TaxID=1852787 RepID=A0A1V5R0K2_9BACT)

HSP 1 Score: 300 bits (769), Expect = 2.290e-95
Identity = 147/242 (60.74%), Postives = 186/242 (76.86%), Query Frame = 1
Query:    1 AEAMQAASLAPALGLEASLSVFTSSFDLPHDREQKVMHLDPLAADFPAQLEKLLGSAPEPAQLDNYKAMIEEGRGAGLPLEKATLRADDFFPEKNWEVLALTGYMGPDPYSGLPGVEKVSDDTYRVTVRLMSNRSDKRATFTLRLMKDWQSSQLLFSPLLNRFLGGIDYQTRPVKISDSGRIRNELQTLCAEALEYPGGTSLRLFFDRIPAAVIAPERQQRLLEVLRWYRKRHPIWFSWLEL 726
            AEA+QA SLAP LGL A ++ FTS+F++P+DRE+ VM LDP   DFPA+L ++LG A + A ++ ++AMI + R AG+PL    L ADDFFPEK W+VLA++GYM PDPYSG PGVE+V    YRVTVRL S R DKR TFTLRL +  + S L+F+PLL+RF+GG DYQ RPV+ISDSGRIRNELQTLC+EALE+P    +R+ FDRIP  VI P  Q +L E+L WY++ HP+WFSWLE+
Sbjct:  352 AEAIQAVSLAPMLGLAAYITPFTSTFEVPYDRERLVMALDPDGGDFPARLGQVLGQAVDAATVERFRAMILDARDAGIPLNTPMLDADDFFPEKKWDVLAVSGYMCPDPYSGAPGVEEVEPGLYRVTVRLASARGDKRITFTLRLAETLEQSWLIFNPLLSRFMGGEDYQKRPVRISDSGRIRNELQTLCSEALEFPQQDHIRVHFDRIPPEVIPPASQVKLREILHWYKETHPLWFSWLEI 593          
BLAST of mRNA_P-wetherbeei_contig20460.2.1 vs. uniprot
Match: A0A7X7XF97_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7X7XF97_9BACT)

HSP 1 Score: 298 bits (763), Expect = 1.760e-94
Identity = 146/249 (58.63%), Postives = 186/249 (74.70%), Query Frame = 1
Query:    1 AEAMQAASLAPALGLEASLSVFTSSFDLPHDREQKVMHLDPLAADFPAQLEKLLGSAPEPAQLDNYKAMIEEGRGAGLPLEKATLRADDFFPEKNWEVLALTGYMGPDPYSGLPGVEKVSDDTYRVTVRLMSNRSDKRATFTLRLMKDWQSSQLLFSPLLNRFLGGIDYQTRPVKISDSGRIRNELQTLCAEALEYPGGTSLRLFFDRIPAAVIAPERQQRLLEVLRWYRKRHPIWFSWLELVPPGATV 747
            AEA+QAASLAP L LEASL  FTS FDLP+ REQ VM L+P A DF A+LE ++G + + A +  ++ +I EG  AG+P+ K  +  DDFFPEK W+VLA+ GYM  DPYSG PGV+++  + +R TVRL + R DK  TFTLR+M+    S+L+F+PLLNRFL G DY+TRPVKISDSGRIRNELQTLC EALE+ G   +R++FDRI    I   +Q +LLEVLRWY++RHP+WFSWLE+V P A +
Sbjct:  349 AEAIQAASLAPMLNLEASLVPFTSRFDLPYQREQDVMSLNPDADDFKARLEAIIGRSADAATVQEFRRLIHEGIDAGIPVHKPLIHVDDFFPEKEWDVLAVCGYMQADPYSGAPGVKQIETNVFRSTVRLAAPRGDKLITFTLRMMETPNQSRLVFNPLLNRFLAGEDYETRPVKISDSGRIRNELQTLCTEALEFCGDEHIRIYFDRILPEAIPEAKQAKLLEVLRWYKRRHPLWFSWLEIVEPTAHI 597          
BLAST of mRNA_P-wetherbeei_contig20460.2.1 vs. uniprot
Match: D9PJ08_9ZZZZ (Uncharacterized protein n=1 Tax=sediment metagenome TaxID=749907 RepID=D9PJ08_9ZZZZ)

HSP 1 Score: 298 bits (762), Expect = 2.690e-94
Identity = 150/246 (60.98%), Postives = 186/246 (75.61%), Query Frame = 1
Query:    1 AEAMQAASLAPALGLEASLSVFTSSFDLPHDREQKVMHLDPLAADFPAQLEKLLGSAPEPAQLDNYKAMIEEGRGAGLPLEKATLRADDFFPEKNWEVLALTGYMGPDPYSGLPGVEKVSDDTYRVTVRLMSNRSDKRATFTLRLMKDWQSSQLLFSPLLNRFLGGIDYQTRPVKISDSGRIRNELQTLCAEALEYPGGTSLRLFFDRIPAAVIAPERQQRLLEVLRWYRKRHPIWFSWLELVPPG 738
            AEAMQAASLAP LGLEASL+VFTS F+L +D EQ +MHLDP AADF  +L  LLG A +  +   Y+ ++ E R AG+PLEKA + ADDFFPEK WEV AL+GYM  DPYSG PGV++ +   YRV VRL + R DKR  FTLRLM++ + S+L+F+PLL RF  G D+++R VKISDSGRIRNELQTLC+EA+EY     +R+ FDRIP  VI+P  Q+ LLEVLRWY++ HP+WFSWL +  PG
Sbjct:  353 AEAMQAASLAPMLGLEASLAVFTSRFELSYDCEQHIMHLDPDAADFGERLSALLGHAVDDGERAAYRDLVLEARDAGVPLEKAVITADDFFPEKRWEVAALSGYMCDDPYSGAPGVQEKAPGVYRVGVRLATARGDKRVFFTLRLMEERRESRLVFNPLLTRFFYGEDFRSRAVKISDSGRIRNELQTLCSEAIEYLDQQRMRIHFDRIPPEVISPANQEVLLEVLRWYKRHHPLWFSWLMVEGPG 598          
BLAST of mRNA_P-wetherbeei_contig20460.2.1 vs. uniprot
Match: A0A1F5VJ43_9BACT (Uncharacterized protein n=1 Tax=Candidatus Fischerbacteria bacterium RBG_13_37_8 TaxID=1817863 RepID=A0A1F5VJ43_9BACT)

HSP 1 Score: 285 bits (728), Expect = 2.910e-89
Identity = 141/245 (57.55%), Postives = 179/245 (73.06%), Query Frame = 1
Query:    1 AEAMQAASLAPALGLEASLSVFTSSFDLPHDREQKVMHLDPLAADFPAQLEKLLGSAPEPAQLDNYKAMIEEGRGAGLPLEKATLRADDFFPEKNWEVLALTGYMGPDPYSGLPGVEKVSDDTYRVTVRLMSNRSDKRATFTLRLMKDWQSSQLLFSPLLNRFLGGIDYQTRPVKISDSGRIRNELQTLCAEALEYPGGTSLRLFFDRIPAAVIAPERQQRLLEVLRWYRKRHPIWFSWLELVPP 735
            AEAMQAASLAP L   A LSVFTSSF L  D+EQ +M+LDP A DF  +LE L+G   +      YK MI E   A +PL K ++ ADDFFPEK+W+VLA++GYM PDPYSG  GVE++S   YRVT RL S + +K  TFT++LMK  + S+ +F+PLL RFL G D+++RPVKISDSGRIRNE+QTLC+EALE+     + + F+RI   VI+P  Q++LLEVLRWY+K HPIWF+WLE+  P
Sbjct:  353 AEAMQAASLAPLLNQRAFLSVFTSSFKLSFDKEQHIMNLDPNATDFKTRLEVLIGKEVDDKTAAKYKDMIMEAVDANIPLHKLSIEADDFFPEKDWDVLAVSGYMNPDPYSGASGVEEISPSVYRVTTRLSSKQGEKLITFTIKLMKSMEQSRFVFNPLLIRFLSGEDFESRPVKISDSGRIRNEVQTLCSEALEFQKDEKICIHFNRILPDVISPNNQKKLLEVLRWYKKNHPIWFAWLEISAP 597          
BLAST of mRNA_P-wetherbeei_contig20460.2.1 vs. uniprot
Match: A0A831KXW2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A831KXW2_9BACT)

HSP 1 Score: 284 bits (727), Expect = 4.430e-89
Identity = 141/247 (57.09%), Postives = 183/247 (74.09%), Query Frame = 1
Query:    1 AEAMQAASLAPALGLEASLSVFTSSFDLPHDREQKVMHLDPLAADFPAQLEKLLGSAPEPAQLDNYKAMIEEGRGAGLPLEKATLRADDFFPEKNWEVLALTGYMGPDPYSGLPGVEKVSDDTYRVTVRLMSNRSDKRATFTLRLMKDWQSSQLLFSPLLNRFLGGIDYQTRPVKISDSGRIRNELQTLCAEALEYPGGTSLRLFFDRIPAAVIAPERQQRLLEVLRWYRKRHPIWFSWLELVPPGA 741
            AEAMQAASLAP +GL ASL VFTS+F L  ++EQ +M L+P +ADF  +L+ ++G          Y AMI EGR AG+PL+   + A+DFFPEK WEVLA+ GYM PDPYSG+ GVE V+D  YRV VRL   R DK  TFTLRLM+  + S+L+F+PLLNRFL G DY++RPVKISDSGRIRNELQTLC+EALE+ G   +R+ F+RI   VI+ E+Q++L ++L WY+  HPIWF+WL+++   +
Sbjct:  353 AEAMQAASLAPIMGLSASLCVFTSNFKLSFEKEQDIMLLNPDSADFNEKLKAVMGKPLGDGDAMTYAAMIREGRQAGIPLKINCIEANDFFPEKQWEVLAVCGYMRPDPYSGVKGVEAVADGVYRVCVRLSCKRGDKDITFTLRLMESMEQSRLVFNPLLNRFLAGEDYESRPVKISDSGRIRNELQTLCSEALEFIGEDRIRVHFERIAPEVISLEKQRKLKQILVWYKSHHPIWFNWLDIIASSS 599          
BLAST of mRNA_P-wetherbeei_contig20460.2.1 vs. uniprot
Match: A0A2M8D3V3_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium CG_4_9_14_3_um_filter_49_7 TaxID=1973888 RepID=A0A2M8D3V3_9BACT)

HSP 1 Score: 283 bits (724), Expect = 1.120e-88
Identity = 138/242 (57.02%), Postives = 182/242 (75.21%), Query Frame = 1
Query:    1 AEAMQAASLAPALGLEASLSVFTSSFDLPHDREQKVMHLDPLAADFPAQLEKLLGSAPEPAQLDNYKAMIEEGRGAGLPLEKATLRADDFFPEKNWEVLALTGYMGPDPYSGLPGVEKVSDDTYRVTVRLMSNRSDKRATFTLRLMKDWQSSQLLFSPLLNRFLGGIDYQTRPVKISDSGRIRNELQTLCAEALEYPGGTSLRLFFDRIPAAVIAPERQQRLLEVLRWYRKRHPIWFSWLEL 726
            AEAMQA SLAP LGLEA LSVFTS F LP+DRE  +M L+P A DF  +L ++L   P+   ++ Y+ +I+ G  AG+P++KA + ADDFFPEKNWEV+A++GYM PDPYSG  G++KV ++ Y+ TVR  + R+DK+ TFT RLM+  + S+L+FSPLLNRF  G D++ RPVKISDSGRIRNELQTLC+EALE+ G   +R+ F+ I   VI+ E Q +L ++LRWY+  HP+WF WLEL
Sbjct:  353 AEAMQATSLAPMLGLEAFLSVFTSKFKLPYDREWHIMGLNPQATDFAEKLAEILEGQPDRETIEMYRELIQGGIEAGIPVKKANVSADDFFPEKNWEVMAISGYMCPDPYSGASGIKKVGENIYQATVRQATPRADKQITFTFRLMETMEQSRLVFSPLLNRFFYGEDFENRPVKISDSGRIRNELQTLCSEALEFLGEDRIRVHFNLILPDVISLEHQAKLKDILRWYKANHPLWFGWLEL 594          
BLAST of mRNA_P-wetherbeei_contig20460.2.1 vs. uniprot
Match: A0A8I2FWQ5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A8I2FWQ5_9BACT)

HSP 1 Score: 283 bits (723), Expect = 2.030e-88
Identity = 143/245 (58.37%), Postives = 179/245 (73.06%), Query Frame = 1
Query:    1 AEAMQAASLAPALGLEASLSVFTSSFDLPHDREQKVMHLDPLAADFPAQLEKLLGSAPEPAQLDNYKAMIEEGRGAGLPLEKATLRADDFFPEKNWEVLALTGYMGPDPYSGLPGVEKVSDDT--YRVTVRLMSNRSDKRATFTLRLMKDWQSSQLLFSPLLNRFLGGIDYQTRPVKISDSGRIRNELQTLCAEALEYPGGTSLRLFFDRIPAAVIAPERQQRLLEVLRWYRKRHPIWFSWLELV 729
            AEAMQAASLAP L + A LSVFTS+F LP+D+E  +M L+P A DF  QLEKL G   +   ++ YK MI     AG+P++K  L ADD FPEK W VLA++GYM PDPYSG  GVE V ++   Y+VTVRL+  + DKR  F LRLM+D + SQL+F+PLLNRFL G DY++R V+ISDSGRIRNE+QTLC EALE+  G  +R+ FDRIP  VI+P  Q++L E+L WY+  HP WFSWLE+V
Sbjct:  363 AEAMQAASLAPLLNIRAFLSVFTSNFKLPYDKEPSIMSLNPDAPDFKNQLEKLAGKDFDDDTVEKYKEMIRTAADAGIPVKKQALEADDLFPEKQWSVLAVSGYMCPDPYSGAQGVELVDEENRIYKVTVRLVGPKGDKRIMFKLRLMEDLEESQLVFNPLLNRFLAGEDYKSRAVRISDSGRIRNEIQTLCTEALEF-NGERIRIHFDRIPPEVISPANQEKLREILEWYKAYHPTWFSWLEIV 606          
BLAST of mRNA_P-wetherbeei_contig20460.2.1 vs. uniprot
Match: A0A7C4X2I9_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7C4X2I9_9PROT)

HSP 1 Score: 281 bits (720), Expect = 3.830e-88
Identity = 138/242 (57.02%), Postives = 178/242 (73.55%), Query Frame = 1
Query:    1 AEAMQAASLAPALGLEASLSVFTSSFDLPHDREQKVMHLDPLAADFPAQLEKLLGSAPEPAQLDNYKAMIEEGRGAGLPLEKATLRADDFFPEKNWEVLALTGYMGPDPYSGLPGVEKVSDDTYRVTVRLMSNRSDKRATFTLRLMKDWQSSQLLFSPLLNRFLGGIDYQTRPVKISDSGRIRNELQTLCAEALEYPGGTSLRLFFDRIPAAVIAPERQQRLLEVLRWYRKRHPIWFSWLEL 726
            AEAMQAASL P L L+ SL++FTS F+L ++RE +++ +DP   DF A+L  LLG  P+ A +  Y+ MI E   AGLP  K  +RADDFFPEK W VLA+ GYM PDPYSG PGV +++ DT+ V+VRL + R D   T  LRLM+ ++ S+L+F+PLLNRF+ G +Y++RPVKISDSGRIRNELQTLC+EALE+     +R+ FDRIP  VI+PE+Q  L E+L WYR+ HP WF WLEL
Sbjct:  348 AEAMQAASLCPLLDLDVSLAIFTSRFELSYEREAQIIRMDPDGPDFAAKLGALLGKEPDAATVALYRKMIGEAARAGLPTRKRVIRADDFFPEKEWSVLAVAGYMLPDPYSGAPGVRQIAPDTFEVSVRLTTPRGDNLTTVALRLMETFEESRLVFNPLLNRFMQGENYRSRPVKISDSGRIRNELQTLCSEALEHFNENCIRVHFDRIPPDVISPEKQVVLREILEWYRENHPAWFHWLEL 589          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20460.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9AHD2_9BURK1.780e-10664.54Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A524JZL4_9BACT1.150e-9559.59Uncharacterized protein n=1 Tax=Chrysiogenales bac... [more]
A0A1V5R0K2_9BACT2.290e-9560.74Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A7X7XF97_9BACT1.760e-9458.63Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
D9PJ08_9ZZZZ2.690e-9460.98Uncharacterized protein n=1 Tax=sediment metagenom... [more]
A0A1F5VJ43_9BACT2.910e-8957.55Uncharacterized protein n=1 Tax=Candidatus Fischer... [more]
A0A831KXW2_9BACT4.430e-8957.09Uncharacterized protein n=1 Tax=Candidatus Aminice... [more]
A0A2M8D3V3_9BACT1.120e-8857.02Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A8I2FWQ5_9BACT2.030e-8858.37Uncharacterized protein n=1 Tax=Candidatus Aminice... [more]
A0A7C4X2I9_9PROT3.830e-8857.02Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20460contigP-wetherbeei_contig20460:454..1221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1265505.ATUG01000001_gene3461
Model size768
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.27e-76
EggNOG OGs28MMZ@1|root,2ZAXK@2|Bacteria,1R7WU@1224|Proteobacteria,42QIC@68525|delta/epsilon subdivisions,2WKJJ@28221|Deltaproteobacteria,2MJD3@213118|Desulfobacterales
Cds size759
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186200.4469523-CDS-P-wetherbeei_contig20460:453..12121683186200.4469523-CDS-P-wetherbeei_contig20460:453..1212Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20460 454..1212 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186200.4578855-UTR-P-wetherbeei_contig20460:1212..12211683186200.4578855-UTR-P-wetherbeei_contig20460:1212..1221Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20460 1213..1221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20460.2.1prot_P-wetherbeei_contig20460.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20460 454..1212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20460.2.1

>prot_P-wetherbeei_contig20460.2.1 ID=prot_P-wetherbeei_contig20460.2.1|Name=mRNA_P-wetherbeei_contig20460.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=253bp
MQAASLAPALGLEASLSVFTSSFDLPHDREQKVMHLDPLAADFPAQLEKL
LGSAPEPAQLDNYKAMIEEGRGAGLPLEKATLRADDFFPEKNWEVLALTG
YMGPDPYSGLPGVEKVSDDTYRVTVRLMSNRSDKRATFTLRLMKDWQSSQ
LLFSPLLNRFLGGIDYQTRPVKISDSGRIRNELQTLCAEALEYPGGTSLR
LFFDRIPAAVIAPERQQRLLEVLRWYRKRHPIWFSWLELVPPGATVPEAD
LT*
back to top

mRNA from alignment at P-wetherbeei_contig20460:454..1221-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20460.2.1 ID=mRNA_P-wetherbeei_contig20460.2.1|Name=mRNA_P-wetherbeei_contig20460.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=768bp|location=Sequence derived from alignment at P-wetherbeei_contig20460:454..1221- (Phaeothamnion wetherbeei SAG_119_79)
GCGGAGGCCATGCAGGCCGCCAGCCTGGCGCCCGCTCTGGGCCTGGAAGC GTCACTGAGCGTGTTTACGTCCTCCTTCGATCTGCCTCACGATCGCGAGC AGAAGGTCATGCACCTCGATCCCCTGGCCGCCGATTTCCCGGCGCAGCTG GAAAAGCTCCTGGGCTCCGCACCTGAGCCGGCCCAACTCGACAACTACAA GGCGATGATCGAAGAAGGACGGGGAGCGGGTTTGCCGCTCGAGAAAGCCA CCCTGCGCGCCGATGATTTCTTTCCCGAAAAGAACTGGGAAGTTCTGGCT CTCACCGGCTACATGGGGCCCGACCCCTACTCCGGTTTGCCGGGTGTCGA GAAGGTCAGCGACGACACGTATCGCGTGACCGTTCGTCTGATGTCCAATC GCAGCGACAAGCGGGCGACCTTCACGCTCCGCCTCATGAAGGATTGGCAG AGCAGTCAACTGCTCTTCAGTCCACTGCTCAATCGTTTCCTGGGCGGAAT CGACTATCAGACCCGCCCCGTCAAGATTTCCGATTCGGGCCGGATTCGTA ACGAGCTACAGACTCTTTGCGCGGAAGCCCTGGAATATCCGGGAGGAACC AGCCTGCGGCTCTTCTTCGATCGCATCCCCGCCGCCGTGATCGCCCCCGA GCGTCAGCAGCGCCTCTTGGAGGTATTGCGGTGGTACCGTAAGCGTCATC CCATCTGGTTCTCCTGGCTGGAGTTGGTGCCGCCCGGCGCCACCGTTCCT GAGGCAGACCTGACTTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20460:454..1221-

>mRNA_P-wetherbeei_contig20460.2.1 ID=mRNA_P-wetherbeei_contig20460.2.1|Name=mRNA_P-wetherbeei_contig20460.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=759bp|location=Sequence derived from alignment at P-wetherbeei_contig20460:454..1221- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGCCGCCAGCCTGGCGCCCGCTCTGGGCCTGGAAGCGTCACTGAG
CGTGTTTACGTCCTCCTTCGATCTGCCTCACGATCGCGAGCAGAAGGTCA
TGCACCTCGATCCCCTGGCCGCCGATTTCCCGGCGCAGCTGGAAAAGCTC
CTGGGCTCCGCACCTGAGCCGGCCCAACTCGACAACTACAAGGCGATGAT
CGAAGAAGGACGGGGAGCGGGTTTGCCGCTCGAGAAAGCCACCCTGCGCG
CCGATGATTTCTTTCCCGAAAAGAACTGGGAAGTTCTGGCTCTCACCGGC
TACATGGGGCCCGACCCCTACTCCGGTTTGCCGGGTGTCGAGAAGGTCAG
CGACGACACGTATCGCGTGACCGTTCGTCTGATGTCCAATCGCAGCGACA
AGCGGGCGACCTTCACGCTCCGCCTCATGAAGGATTGGCAGAGCAGTCAA
CTGCTCTTCAGTCCACTGCTCAATCGTTTCCTGGGCGGAATCGACTATCA
GACCCGCCCCGTCAAGATTTCCGATTCGGGCCGGATTCGTAACGAGCTAC
AGACTCTTTGCGCGGAAGCCCTGGAATATCCGGGAGGAACCAGCCTGCGG
CTCTTCTTCGATCGCATCCCCGCCGCCGTGATCGCCCCCGAGCGTCAGCA
GCGCCTCTTGGAGGTATTGCGGTGGTACCGTAAGCGTCATCCCATCTGGT
TCTCCTGGCTGGAGTTGGTGCCGCCCGGCGCCACCGTTCCTGAGGCAGAC
CTGACTTAG
back to top