mRNA_P-wetherbeei_contig20460.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20460.1.1
Unique NamemRNA_P-wetherbeei_contig20460.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20460.1.1 vs. uniprot
Match: A0A7Y3GKR2_9DELT (Response regulator n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A7Y3GKR2_9DELT)

HSP 1 Score: 110 bits (276), Expect = 4.520e-29
Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = 1
Query:    1 KVLIVDDDESMRLMLLHKLNKLGYEVHLASNGFEALTLQKEHGVDLLLTDILMPDKDGLELISEFQNNYPNVKLIAMSGGSRISAQLYLKMATLMGPVGLLPKPFSMGDLELALAE 348
            ++LI+DD+E MR ML   L + GYEV  A++G E L +   H V+L++TD++MPDK+GLE I EF+ NYP+VK+IAMSGG +I    YL +A   G    L KPF M D+  A+ +
Sbjct:    3 RILIIDDEEMMRGMLRQLLEREGYEVVDAADGAEGLNIHGRHPVELVITDLIMPDKEGLETILEFKQNYPDVKVIAMSGGGKIGPDNYLNLAEKFGAQCTLTKPFLMKDVLEAVGQ 118          
BLAST of mRNA_P-wetherbeei_contig20460.1.1 vs. uniprot
Match: A0A7C1VE42_9BACE (Response regulator n=1 Tax=Bacteroides sp. TaxID=29523 RepID=A0A7C1VE42_9BACE)

HSP 1 Score: 110 bits (275), Expect = 6.590e-29
Identity = 58/116 (50.00%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    1 KVLIVDDDESMRLMLLHKLNKLGYEVHLASNGFEALTLQKEHGVDLLLTDILMPDKDGLELISEFQNNYPNVKLIAMSGGSRISAQLYLKMATLMGPVGLLPKPFSMGDLELALAE 348
            K+LI+DD+  + LML   L K GYEV+LASNG E + L ++   DL++TDI+MPDK+GLELI E +   P +K+IAMSGG RIS + YL+ A   G   +  KPF   DL  A+ E
Sbjct:    3 KILIIDDEPYILLMLKKMLEKAGYEVNLASNGREGMALFEKASADLVITDIIMPDKEGLELILEMKKQRPALKIIAMSGGGRISPESYLECAKHFGAEKVFQKPFRQKDLISAVKE 118          
BLAST of mRNA_P-wetherbeei_contig20460.1.1 vs. uniprot
Match: A0A0S8KI36_9BACE (Response regulatory domain-containing protein n=1 Tax=Bacteroides sp. SM1_62 TaxID=1703351 RepID=A0A0S8KI36_9BACE)

HSP 1 Score: 110 bits (275), Expect = 6.590e-29
Identity = 58/116 (50.00%), Postives = 78/116 (67.24%), Query Frame = 1
Query:    1 KVLIVDDDESMRLMLLHKLNKLGYEVHLASNGFEALTLQKEHGVDLLLTDILMPDKDGLELISEFQNNYPNVKLIAMSGGSRISAQLYLKMATLMGPVGLLPKPFSMGDLELALAE 348
            KVLI+DD+  + LML   L K GYEV LASNG E L L  ++  DL++TDI+MPDK+GLE+I E +   P++K+IA+SGG RIS + YL+ AT  G   +  KPF   +L  A+ E
Sbjct:    3 KVLIIDDEPYILLMLKKMLEKAGYEVDLASNGKEGLDLFGKNAADLVITDIIMPDKEGLEIILEMKKQRPDLKIIAISGGGRISPESYLECATHFGASRVFQKPFKQKELVSAVNE 118          
BLAST of mRNA_P-wetherbeei_contig20460.1.1 vs. uniprot
Match: A0A7C2QVT4_9BACE (Response regulator n=1 Tax=Bacteroides sp. TaxID=29523 RepID=A0A7C2QVT4_9BACE)

HSP 1 Score: 110 bits (274), Expect = 1.020e-28
Identity = 53/116 (45.69%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 KVLIVDDDESMRLMLLHKLNKLGYEVHLASNGFEALTLQKEHGVDLLLTDILMPDKDGLELISEFQNNYPNVKLIAMSGGSRISAQLYLKMATLMGPVGLLPKPFSMGDLELALAE 348
            K+LI+DD+  + +ML   L K GYE  LASNG E + L K+   DL++TDI+MP+K+GLE I E +  +P++K+IAMSGG +ISA+ YL+ A++ G   ++ KPF+  ++  A+ E
Sbjct:    3 KILIIDDEPYILMMLKKMLEKAGYETDLASNGKEGMDLFKKDPSDLVITDIIMPEKEGLETIREMKRIHPHLKIIAMSGGGKISAENYLETASIFGATRIIEKPFTQNEMVSAVNE 118          
BLAST of mRNA_P-wetherbeei_contig20460.1.1 vs. uniprot
Match: A0A524NY87_9BACT (Response regulator n=1 Tax=Bacteroidia bacterium TaxID=2044936 RepID=A0A524NY87_9BACT)

HSP 1 Score: 108 bits (269), Expect = 1.000e-27
Identity = 55/116 (47.41%), Postives = 78/116 (67.24%), Query Frame = 1
Query:    1 KVLIVDDDESMRLMLLHKLNKLGYEVHLASNGFEALTLQKEHGVDLLLTDILMPDKDGLELISEFQNNYPNVKLIAMSGGSRISAQLYLKMATLMGPVGLLPKPFSMGDLELALAE 348
            ++LI+DDD  + LM+   L + GYEV LASNG E + L K    DL++TDI+MP+K+GLE I E +   P++K+IAMSGG +ISA  YL+ A + G   +L KPFS   + LA+ +
Sbjct:    3 RILIIDDDHHILLMIKKMLERAGYEVDLASNGSEGMELFKRIHADLVITDIIMPEKEGLETIREMKRLRPDLKIIAMSGGGKISADNYLETAKIFGASLVLEKPFSQKTMVLAVID 118          
BLAST of mRNA_P-wetherbeei_contig20460.1.1 vs. uniprot
Match: A0A2N2KQZ1_9DELT (Response regulator n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-10 TaxID=2013737 RepID=A0A2N2KQZ1_9DELT)

HSP 1 Score: 107 bits (267), Expect = 1.390e-27
Identity = 50/119 (42.02%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    4 VLIVDDDESMRLMLLHKLNKLGYEVHLASNGFEALTLQKEHGVDLLLTDILMPDKDGLELISEFQNNYPNVKLIAMSGGSRISAQLYLKMATLMGPVGLLPKPFSMGDLELALAEATRV 360
            +L++DDD+ +R ML   L   GY V +A++G EA+ LQ+ +  DL+LTDI+MPD +G+E+I+E +  YP  ++IAMSGG RI+A  YL +A  +G      KPF   ++  A++E  ++
Sbjct:    8 ILVIDDDDMLRAMLKKLLGNAGYAVDVAADGIEAMKLQQLNPADLILTDIIMPDMEGIEVITELRKKYPATQIIAMSGGGRINADQYLTIARRLGAQKTFVKPFKSSEMLAAVSELLKI 126          
BLAST of mRNA_P-wetherbeei_contig20460.1.1 vs. uniprot
Match: A0A353GEU3_9BACT (Response regulator n=1 Tax=Candidatus Sumerlaeota bacterium TaxID=2107588 RepID=A0A353GEU3_9BACT)

HSP 1 Score: 107 bits (266), Expect = 2.850e-27
Identity = 46/111 (41.44%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    1 KVLIVDDDESMRLMLLHKLNKLGYEVHLASNGFEALTLQKEHGVDLLLTDILMPDKDGLELISEFQNNYPNVKLIAMSGGSRISAQLYLKMATLMGPVGLLPKPFSMGDLE 333
            ++L+VDDD+ +R +L H L +LG+EV  A+NG EAL L K+   D++  D++MP K+G+E I++F+  +P+ K++AMSGG R+  + YL +A  +G    + KPF+ G ++
Sbjct:   24 RILVVDDDDQVRTLLQHMLERLGHEVVAATNGNEALRLYKQAPTDMIFMDLIMPGKEGIETITDFRREFPDAKIVAMSGGGRMGPENYLDLAKKLGAQRTMSKPFTFGQVQ 134          
BLAST of mRNA_P-wetherbeei_contig20460.1.1 vs. uniprot
Match: D3RNM7_ALLVD (Response regulator receiver protein n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) TaxID=572477 RepID=D3RNM7_ALLVD)

HSP 1 Score: 105 bits (263), Expect = 4.360e-27
Identity = 59/118 (50.00%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 KVLIVDDDESMRLMLLHKLNKLGYEVHLASNGFEALTLQKEHGVDLLLTDILMPDKDGLELISEFQNNYPNVKLIAMSGGSR-ISAQLYLKMATLMGPVGLLPKPFSMGDLELALAEA 351
            KVLIVDDDE  R ML   + + GY+V  A+NG EAL   +    DL++TDILMP+KDG+ELI E       + +IA+SGG R IS +  L+ A LMG    LPKPF+  DL  A+ EA
Sbjct:    3 KVLIVDDDELFRAMLTEMVQREGYQVSTATNGNEALAAIEHSRPDLVITDILMPEKDGIELIMELAQRESRIPIIAVSGGRRSISLEFNLESAKLMGVRATLPKPFTREDLRRAITEA 120          
BLAST of mRNA_P-wetherbeei_contig20460.1.1 vs. uniprot
Match: A0A7C1I439_9BACE (Response regulator n=1 Tax=Bacteroides sp. TaxID=29523 RepID=A0A7C1I439_9BACE)

HSP 1 Score: 105 bits (262), Expect = 6.920e-27
Identity = 51/116 (43.97%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 KVLIVDDDESMRLMLLHKLNKLGYEVHLASNGFEALTLQKEHGVDLLLTDILMPDKDGLELISEFQNNYPNVKLIAMSGGSRISAQLYLKMATLMGPVGLLPKPFSMGDLELALAE 348
            K+LI+DD+  + +ML   L K GY+V LASNG E + L ++    L++TDI+MP+K+GLE I E +   P++K+IAMSGG +ISA+ YL+ A++ G   ++ KPF+  ++  A+ E
Sbjct:    4 KILIIDDEPYILMMLKKMLEKAGYDVDLASNGREGMELFQKEPACLVITDIIMPEKEGLETIREMKRLSPDLKIIAMSGGGKISAENYLETASIFGATKIIEKPFTQNEMVSAVKE 119          
BLAST of mRNA_P-wetherbeei_contig20460.1.1 vs. uniprot
Match: UPI0004043300 (response regulator n=1 Tax=Desulfogranum mediterraneum TaxID=160661 RepID=UPI0004043300)

HSP 1 Score: 105 bits (261), Expect = 1.010e-26
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 KVLIVDDDESMRLMLLHKLNKLGYEVHLASNGFEALTLQKEHGVDLLLTDILMPDKDGLELISEFQNNYPNVKLIAMSGGSRISAQLYLKMATLMGPVGLLPKPFSMGDL 330
            ++L+VDD+E +R ML   L + GYEVH A NG + ++   +H  DL++TD++MP KDGL+ I E   +YP +K++A+SGG  I A+ YL MA  +G +  L KPF    L
Sbjct:    3 RILVVDDEEQIRTMLTQMLEQEGYEVHTAENGEDGMSQVGQHFFDLVITDMIMPVKDGLKFIMELVRDYPELKILAISGGGAIKAERYLTMAGYLGDIATLEKPFKRESL 112          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20460.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y3GKR2_9DELT4.520e-2948.28Response regulator n=1 Tax=Desulfobacterales bacte... [more]
A0A7C1VE42_9BACE6.590e-2950.00Response regulator n=1 Tax=Bacteroides sp. TaxID=2... [more]
A0A0S8KI36_9BACE6.590e-2950.00Response regulatory domain-containing protein n=1 ... [more]
A0A7C2QVT4_9BACE1.020e-2845.69Response regulator n=1 Tax=Bacteroides sp. TaxID=2... [more]
A0A524NY87_9BACT1.000e-2747.41Response regulator n=1 Tax=Bacteroidia bacterium T... [more]
A0A2N2KQZ1_9DELT1.390e-2742.02Response regulator n=1 Tax=Deltaproteobacteria bac... [more]
A0A353GEU3_9BACT2.850e-2741.44Response regulator n=1 Tax=Candidatus Sumerlaeota ... [more]
D3RNM7_ALLVD4.360e-2750.00Response regulator receiver protein n=1 Tax=Alloch... [more]
A0A7C1I439_9BACE6.920e-2743.97Response regulator n=1 Tax=Bacteroides sp. TaxID=2... [more]
UPI00040433001.010e-2644.55response regulator n=1 Tax=Desulfogranum mediterra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20460contigP-wetherbeei_contig20460:17..379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121403.AUCV01000005_gene251
PFAMsGGDEF,Response_reg
Model size363
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.56e-21
EggNOG OGsCOG2204@1|root,COG2204@2|Bacteria
Descriptionphosphorelay signal transduction system
Cds size333
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186200.395251-CDS-P-wetherbeei_contig20460:16..3491683186200.395251-CDS-P-wetherbeei_contig20460:16..349Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20460 17..349 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186200.4095798-UTR-P-wetherbeei_contig20460:349..3791683186200.4095798-UTR-P-wetherbeei_contig20460:349..379Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20460 350..379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20460.1.1prot_P-wetherbeei_contig20460.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20460 17..349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20460.1.1

>prot_P-wetherbeei_contig20460.1.1 ID=prot_P-wetherbeei_contig20460.1.1|Name=mRNA_P-wetherbeei_contig20460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
MRLMLLHKLNKLGYEVHLASNGFEALTLQKEHGVDLLLTDILMPDKDGLE
LISEFQNNYPNVKLIAMSGGSRISAQLYLKMATLMGPVGLLPKPFSMGDL
ELALAEATRV*
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mRNA from alignment at P-wetherbeei_contig20460:17..379-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20460.1.1 ID=mRNA_P-wetherbeei_contig20460.1.1|Name=mRNA_P-wetherbeei_contig20460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig20460:17..379- (Phaeothamnion wetherbeei SAG_119_79)
AAGGTTCTCATCGTCGACGACGATGAGTCGATGCGCCTCATGCTCTTGCA CAAGCTCAACAAATTGGGCTACGAGGTCCACCTCGCCAGCAACGGCTTCG AGGCCCTGACACTGCAAAAAGAGCACGGGGTGGATCTGCTGCTCACCGAC ATCCTCATGCCCGACAAGGACGGCCTCGAGCTGATTTCGGAGTTCCAGAA CAATTATCCGAACGTCAAGCTGATAGCGATGTCGGGCGGCTCACGGATTT CCGCGCAGCTCTATCTTAAGATGGCAACCTTGATGGGGCCCGTGGGTCTT TTGCCCAAGCCGTTTTCGATGGGCGATCTCGAGCTCGCTCTGGCAGAAGC GACGCGCGTCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20460:17..379-

>mRNA_P-wetherbeei_contig20460.1.1 ID=mRNA_P-wetherbeei_contig20460.1.1|Name=mRNA_P-wetherbeei_contig20460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig20460:17..379- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCTCATGCTCTTGCACAAGCTCAACAAATTGGGCTACGAGGTCCA
CCTCGCCAGCAACGGCTTCGAGGCCCTGACACTGCAAAAAGAGCACGGGG
TGGATCTGCTGCTCACCGACATCCTCATGCCCGACAAGGACGGCCTCGAG
CTGATTTCGGAGTTCCAGAACAATTATCCGAACGTCAAGCTGATAGCGAT
GTCGGGCGGCTCACGGATTTCCGCGCAGCTCTATCTTAAGATGGCAACCT
TGATGGGGCCCGTGGGTCTTTTGCCCAAGCCGTTTTCGATGGGCGATCTC
GAGCTCGCTCTGGCAGAAGCGACGCGCGTCTAG
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