mRNA_P-wetherbeei_contig20436.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20436.1.1
Unique NamemRNA_P-wetherbeei_contig20436.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20436.1.1 vs. uniprot
Match: A0A7K2B8E0_9ACTN (SMC family ATPase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2B8E0_9ACTN)

HSP 1 Score: 187 bits (476), Expect = 5.150e-53
Identity = 94/114 (82.46%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    1 AVRDHNNADDIRGARTLSGGETFLVSLSLALALASSTAELAPEGAPQLESIFLDEGFGTLDSNTLDTVASAIEELGASGRMVGIVTHIRELADRMPVRLEVTKSGGSSRVERVE 342
            AVRDH NAD++RGARTLSGGETFL SLSLALA+A +TAELAPEGAP++ESIFLDEGFGTLD +TLDTVA+A+EELG +GR VGIVTHIRELADRMPVRLEVTK+GGS+ VER+E
Sbjct:  841 AVRDHTNADEVRGARTLSGGETFLASLSLALAVADATAELAPEGAPRMESIFLDEGFGTLDPHTLDTVATAVEELGTTGRFVGIVTHIRELADRMPVRLEVTKTGGSAAVERIE 954          
BLAST of mRNA_P-wetherbeei_contig20436.1.1 vs. uniprot
Match: A0A6L7NFK9_9ACTN (SMC family ATPase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7NFK9_9ACTN)

HSP 1 Score: 182 bits (462), Expect = 4.250e-51
Identity = 92/114 (80.70%), Postives = 105/114 (92.11%), Query Frame = 1
Query:    1 AVRDHNNADDIRGARTLSGGETFLVSLSLALALASSTAELAPEGAPQLESIFLDEGFGTLDSNTLDTVASAIEELGASGRMVGIVTHIRELADRMPVRLEVTKSGGSSRVERVE 342
            AVRDH NAD++R ARTLSGGETFL SLSLALA+A +TAELA EGAP++ESIFLDEGFGTLD +TLDTVA+A+EELG +GR VGIVTHIRELADRMPVRLEVTK+GGS+ VER+E
Sbjct:  840 AVRDHTNADEVRSARTLSGGETFLASLSLALAVADATAELAAEGAPRMESIFLDEGFGTLDPHTLDTVATAVEELGTTGRFVGIVTHIRELADRMPVRLEVTKTGGSATVERIE 953          
BLAST of mRNA_P-wetherbeei_contig20436.1.1 vs. uniprot
Match: A0A7Y1XUU3_9ACTN (SMC family ATPase n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y1XUU3_9ACTN)

HSP 1 Score: 170 bits (430), Expect = 6.150e-47
Identity = 87/115 (75.65%), Postives = 100/115 (86.96%), Query Frame = 1
Query:    1 AVRDHNNADDIRGARTLSGGETFLVSLSLALALASSTAELAPEGAPQLESIFLDEGFGTLDSNTLDTVASAIEELGASGRMVGIVTHIRELADRMPVRLEVTKSGGSSRVERVEA 345
            A+RDH NAD++R ARTLSGGETFL SL+LALALA S AEL+PEG P +ES+FLDEGFGTLDS TLD VASAIEELGA+GRMVG+VTHIRELADR+PVR EV++S  +S V R EA
Sbjct:  680 AIRDHRNADEVRPARTLSGGETFLASLALALALADSVAELSPEGVPPIESMFLDEGFGTLDSETLDVVASAIEELGAAGRMVGVVTHIRELADRVPVRFEVSRSPATSSVVRSEA 794          
BLAST of mRNA_P-wetherbeei_contig20436.1.1 vs. uniprot
Match: A0A7K1ZBE5_9ACTN (SMC family ATPase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZBE5_9ACTN)

HSP 1 Score: 159 bits (403), Expect = 2.520e-44
Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    4 VRDHNNADDIRGARTLSGGETFLVSLSLALALASSTAELAPEGAPQLESIFLDEGFGTLDSNTLDTVASAIEELGASGRMVGIVTHIRELADRMPVRLEVTKSGGSSRVERVEA 345
            + DH+NAD IRGAR+LSGGETFL SL+LALAL  S AE+APEGAP LES+FLDEGFGTLD  TLD  A+AIEELGASGRMV IVTHIRELA+RM +R EV KS  +S V+RV A
Sbjct:  396 ICDHHNADQIRGARSLSGGETFLASLALALALGDSHAEMAPEGAPGLESLFLDEGFGTLDPETLDVTAAAIEELGASGRMVAIVTHIRELAERMSIRFEVAKSPTTSAVKRVPA 509          
BLAST of mRNA_P-wetherbeei_contig20436.1.1 vs. uniprot
Match: A0A7K2AKR6_9ACTN (SMC family ATPase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2AKR6_9ACTN)

HSP 1 Score: 162 bits (411), Expect = 3.700e-44
Identity = 82/113 (72.57%), Postives = 101/113 (89.38%), Query Frame = 1
Query:    4 VRDHNNADDIRGARTLSGGETFLVSLSLALALASSTAELAPEGAPQLESIFLDEGFGTLDSNTLDTVASAIEELGASGRMVGIVTHIRELADRMPVRLEVTKSGGSSRVERVE 342
            VRDH NAD++R ARTLSGGETFL SLSL+LALA +T++L+    P +ESIFLDEGFGTLD +TL+TVA+A+EELGA G++VGIVTHIRELADRMPVRLE+TK+GG+++V RVE
Sbjct:  842 VRDHTNADELRRARTLSGGETFLASLSLSLALAHTTSDLSTGVMPAMESIFLDEGFGTLDPHTLETVATAVEELGAEGKLVGIVTHIRELADRMPVRLELTKTGGAAQVARVE 954          
BLAST of mRNA_P-wetherbeei_contig20436.1.1 vs. uniprot
Match: A0A349B0N9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B0N9_9ACTN)

HSP 1 Score: 147 bits (370), Expect = 2.100e-43
Identity = 79/113 (69.91%), Postives = 91/113 (80.53%), Query Frame = 1
Query:    4 VRDHNNADDIRGARTLSGGETFLVSLSLALALASSTAELAPEGAPQLESIFLDEGFGTLDSNTLDTVASAIEELGASGRMVGIVTHIRELADRMPVRLEVTKSGGSSRVERVE 342
            V DH NAD+ R ARTLSGGETFL SL+LALALA    EL+  G   L++IFLDEGFGTLD +TLD VASAIEELGASGRMVG+V+H+RELADR+PVR EV +   SS VERV+
Sbjct:   11 VIDHANADERRLARTLSGGETFLASLALALALAERVTELSGSGRASLDAIFLDEGFGTLDPDTLDVVASAIEELGASGRMVGVVSHVRELADRVPVRFEVRRGIESSTVERVD 123          
BLAST of mRNA_P-wetherbeei_contig20436.1.1 vs. uniprot
Match: A0A7J9WBJ4_9ACTN (SMC family ATPase n=1 Tax=Nitriliruptorales bacterium TaxID=2497630 RepID=A0A7J9WBJ4_9ACTN)

HSP 1 Score: 147 bits (371), Expect = 8.400e-42
Identity = 80/113 (70.80%), Postives = 89/113 (78.76%), Query Frame = 1
Query:    4 VRDHNNADDIRGARTLSGGETFLVSLSLALALASSTAELAPEGAPQLESIFLDEGFGTLDSNTLDTVASAIEELGASGRMVGIVTHIRELADRMPVRLEVTKSGGSSRVERVE 342
            V DH +AD+ R ARTLSGGETFL SLSLAL LA    +LA   AP+LESIFLDEGFGTLD+ TLD VA+AIEELGA GR VGIVTH+R+LADRMPVR +V K    S VERVE
Sbjct:  150 VVDHRSADEQRPARTLSGGETFLASLSLALTLAEHLTQLAVGVAPRLESIFLDEGFGTLDAETLDVVAAAIEELGARGRTVGIVTHVRDLADRMPVRYDVQKGSAGSVVERVE 262          
BLAST of mRNA_P-wetherbeei_contig20436.1.1 vs. uniprot
Match: A0A6N7FXF6_9ACTN (SMC family ATPase (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FXF6_9ACTN)

HSP 1 Score: 146 bits (369), Expect = 2.740e-41
Identity = 75/115 (65.22%), Postives = 92/115 (80.00%), Query Frame = 1
Query:    1 AVRDHNNADDIRGARTLSGGETFLVSLSLALALASSTAELAPEGAPQLESIFLDEGFGTLDSNTLDTVASAIEELGASGRMVGIVTHIRELADRMPVRLEVTKSGGSSRVERVEA 345
            AV DH+NAD +RG RTLSGGETFL SL+LALALA    +LA  G+ +LES+FLDEGFGTLD  TLD VA+AIEELG+ GRMVG+V+H+R+LA+R+PVR EV K   ++ V RV A
Sbjct:  168 AVVDHHNADTVRGVRTLSGGETFLASLALALALADQVVDLAAGGSARLESLFLDEGFGTLDPETLDVVAAAIEELGSRGRMVGVVSHVRDLAERLPVRYEVAKGPTTATVTRVAA 282          
BLAST of mRNA_P-wetherbeei_contig20436.1.1 vs. uniprot
Match: A0A843T5S3_9BACT (AAA family ATPase n=1 Tax=Gemmatimonas sp. TaxID=1962908 RepID=A0A843T5S3_9BACT)

HSP 1 Score: 151 bits (382), Expect = 2.560e-40
Identity = 79/114 (69.30%), Postives = 94/114 (82.46%), Query Frame = 1
Query:    4 VRDHNNADDIRGARTLSGGETFLVSLSLALALASSTAELAPEGAPQLESIFLDEGFGTLDSNTLDTVASAIEELGASGRMVGIVTHIRELADRMPVRLEVTKSGGSSRVERVEA 345
            V DH NAD+ R A+TLSGGETFL SLSLALALA   A+L    A +L+S+FLDEGFGTLD++TLD VA+AIEELGA GRMVG+VTH+RELA+R+PVR EV K+GG+S VER  A
Sbjct:  682 VIDHRNADERRSAKTLSGGETFLASLSLALALADQVADLVSGSAARLDSLFLDEGFGTLDTDTLDIVAAAIEELGARGRMVGLVTHVRELAERIPVRYEVRKAGGTSTVERSAA 795          
BLAST of mRNA_P-wetherbeei_contig20436.1.1 vs. uniprot
Match: A0A7X1PG87_9CHLR (AAA family ATPase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7X1PG87_9CHLR)

HSP 1 Score: 146 bits (368), Expect = 2.110e-38
Identity = 76/114 (66.67%), Postives = 92/114 (80.70%), Query Frame = 1
Query:    4 VRDHNNADDIRGARTLSGGETFLVSLSLALALASSTAELAPEGAPQLESIFLDEGFGTLDSNTLDTVASAIEELGASGRMVGIVTHIRELADRMPVRLEVTKSGGSSRVERVEA 345
            V DH NA++ R  RTLSGGETFL SL+LALAL    A LA   + +L+++FLDEGFG LD NTL+TVASAIEELGA GRMVGIVTH+ ELADR+PV+  VTK+G +S+VERVE+
Sbjct:  683 VVDHINANEERPVRTLSGGETFLASLALALALGDDIANLAAHSSARLDALFLDEGFGALDQNTLETVASAIEELGARGRMVGIVTHVAELADRIPVQFRVTKNGAASQVERVES 796          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20436.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K2B8E0_9ACTN5.150e-5382.46SMC family ATPase n=1 Tax=Acidimicrobiia bacterium... [more]
A0A6L7NFK9_9ACTN4.250e-5180.70SMC family ATPase n=1 Tax=Acidimicrobiia bacterium... [more]
A0A7Y1XUU3_9ACTN6.150e-4775.65SMC family ATPase n=2 Tax=Acidimicrobiales bacteri... [more]
A0A7K1ZBE5_9ACTN2.520e-4473.68SMC family ATPase n=1 Tax=Acidimicrobiaceae bacter... [more]
A0A7K2AKR6_9ACTN3.700e-4472.57SMC family ATPase n=1 Tax=Acidimicrobiia bacterium... [more]
A0A349B0N9_9ACTN2.100e-4369.91Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7J9WBJ4_9ACTN8.400e-4270.80SMC family ATPase n=1 Tax=Nitriliruptorales bacter... [more]
A0A6N7FXF6_9ACTN2.740e-4165.22SMC family ATPase (Fragment) n=1 Tax=Acidimicrobii... [more]
A0A843T5S3_9BACT2.560e-4069.30AAA family ATPase n=1 Tax=Gemmatimonas sp. TaxID=1... [more]
A0A7X1PG87_9CHLR2.110e-3866.67AAA family ATPase n=1 Tax=Dehalococcoidia bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20436contigP-wetherbeei_contig20436:9..356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog208444.JNYY01000010_gene2720
Preferred namesbcC
PFAMsAAA_23,SbcCD_C
Model size348
Max annot lvl201174|Actinobacteria
KEGG koko:K03546
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.61e-32
EggNOG OGsCOG0419@1|root,COG0419@2|Bacteria,2GKYR@201174|Actinobacteria,4DYBG@85010|Pseudonocardiales
DescriptionATPase involved in DNA repair
Cds size348
COG categoryL
BRITEko00000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186199.6789742-CDS-P-wetherbeei_contig20436:8..3561683186199.6789742-CDS-P-wetherbeei_contig20436:8..356Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20436 9..356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20436.1.1prot_P-wetherbeei_contig20436.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20436 9..356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20436.1.1

>prot_P-wetherbeei_contig20436.1.1 ID=prot_P-wetherbeei_contig20436.1.1|Name=mRNA_P-wetherbeei_contig20436.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
AVRDHNNADDIRGARTLSGGETFLVSLSLALALASSTAELAPEGAPQLES
IFLDEGFGTLDSNTLDTVASAIEELGASGRMVGIVTHIRELADRMPVRLE
VTKSGGSSRVERVEA*
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mRNA from alignment at P-wetherbeei_contig20436:9..356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20436.1.1 ID=mRNA_P-wetherbeei_contig20436.1.1|Name=mRNA_P-wetherbeei_contig20436.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig20436:9..356+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGTTCGCGATCACAACAACGCCGACGACATCCGGGGGGCTCGAACTCT TTCGGGCGGCGAGACGTTTCTGGTGTCTCTATCGCTTGCCCTTGCCCTTG CGTCGTCCACAGCCGAACTTGCCCCAGAAGGAGCGCCACAGCTTGAGTCG ATCTTCCTCGACGAGGGTTTCGGCACCCTTGATTCGAATACCCTGGACAC CGTTGCGTCAGCGATCGAGGAACTCGGTGCAAGCGGCCGAATGGTCGGCA TCGTCACCCACATTCGCGAGCTTGCGGACCGGATGCCGGTTCGCCTTGAA GTGACGAAGAGCGGCGGCTCGTCGAGAGTCGAACGAGTCGAGGCGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20436:9..356+

>mRNA_P-wetherbeei_contig20436.1.1 ID=mRNA_P-wetherbeei_contig20436.1.1|Name=mRNA_P-wetherbeei_contig20436.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig20436:9..356+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGTTCGCGATCACAACAACGCCGACGACATCCGGGGGGCTCGAACTCT
TTCGGGCGGCGAGACGTTTCTGGTGTCTCTATCGCTTGCCCTTGCCCTTG
CGTCGTCCACAGCCGAACTTGCCCCAGAAGGAGCGCCACAGCTTGAGTCG
ATCTTCCTCGACGAGGGTTTCGGCACCCTTGATTCGAATACCCTGGACAC
CGTTGCGTCAGCGATCGAGGAACTCGGTGCAAGCGGCCGAATGGTCGGCA
TCGTCACCCACATTCGCGAGCTTGCGGACCGGATGCCGGTTCGCCTTGAA
GTGACGAAGAGCGGCGGCTCGTCGAGAGTCGAACGAGTCGAGGCGTAG
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