mRNA_P-wetherbeei_contig20409.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20409.1.1
Unique NamemRNA_P-wetherbeei_contig20409.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20409.1.1 vs. uniprot
Match: A0A847JXC2_9BACT (MFS transporter n=1 Tax=Chthonomonadales bacterium TaxID=2282151 RepID=A0A847JXC2_9BACT)

HSP 1 Score: 102 bits (254), Expect = 5.150e-23
Identity = 55/124 (44.35%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 MKGRRGQIMAVTAFMMTICLVFMGLIPPHSGQFFPVILTCAVALLLLGPYCFLGGAISMELGGSKGSATAAGLVDAAGYIGGTLSGVAVGAMAQKWGWGGAFTTLAAFSLMVCLASAAYSWRHE 372
            +  RRG ++A    +    L  +  +   S    PV L+  VALL +GPY  LGGAI+++LGG +GSATA+GLVD  GY+GG +SG+ +G++AQ+ GWG AF  LA  + +  LA+ AY  R+E
Sbjct:  309 LSRRRGGLIATLVTLAAAALAALSHVGAGSNPLLPVALSALVALLTIGPYSLLGGAIALDLGGRRGSATASGLVDGVGYVGGIVSGLGIGSVAQRLGWGAAFYLLAGIAAVTALAAMAYWRRYE 432          
BLAST of mRNA_P-wetherbeei_contig20409.1.1 vs. uniprot
Match: A0A7K2C6F0_9BACT (MFS transporter n=3 Tax=Bacteria TaxID=2 RepID=A0A7K2C6F0_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 9.820e-22
Identity = 55/131 (41.98%), Postives = 81/131 (61.83%), Query Frame = 1
Query:    1 MKGRRGQIMAVTAFMMTICLV-FMGLIPPHSGQFFPVILTCAVALLLLGPYCFLGGAISMELGGSKGSATAAGLVDAAGYIGGTLSGVAVGAMAQKWGWGGAFTTLAAFSLMVCLASAAYSWRHEGTSASR 390
            MKG +  +  +   +  I ++  MG I        P++L  A A+L++GPY FL GAIS++LGG  GS+T +GL+DAAGY+G   SGV +G++AQ+ GW  AF +LA  +L+   A+ AY WR +   A R
Sbjct:   78 MKGGKRSVAMLAGLIPLIAILGIMGSIREPGSAVLPLVLVSAAAILMIGPYSFLAGAISLDLGGKVGSSTTSGLIDAAGYLGAIASGVGIGSLAQRAGWDAAFGSLAIVALVTVGATIAY-WRFQEHLADR 207          
BLAST of mRNA_P-wetherbeei_contig20409.1.1 vs. uniprot
Match: A0A6J4J708_9SPHI (MFS domain-containing protein n=1 Tax=uncultured Cytophagales bacterium TaxID=158755 RepID=A0A6J4J708_9SPHI)

HSP 1 Score: 97.8 bits (242), Expect = 2.280e-21
Identity = 55/123 (44.72%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    4 KGRRGQIMAVTAFMMTICLVFMGLIPPHSGQFFPVILTCAVALLLLGPYCFLGGAISMELGGSKGSATAAGLVDAAGYIGGTLSGVAVGAMAQKWGWGGAFTTLAAFSLMVCLASAAYSWRHE 372
            +GRRG ++ +    +T  LV M       G + P++      LLLLGPY FL GA+S++ GG KG+ATAAGLVDA GY+GGTLS    G +AQ+ GW GAF  L+ F+ +   A+  + W  E
Sbjct:  306 RGRRGVVILLALLPLTAILVLMS--AGLKGAWLPLLFISLAGLLLLGPYSFLAGAMSLDAGGRKGAATAAGLVDAFGYVGGTLSLWLTGLLAQRVGWNGAFLLLSLFAGLTAAAAGVFYWTQE 426          
BLAST of mRNA_P-wetherbeei_contig20409.1.1 vs. uniprot
Match: A0A1V0DGR1_9BACT (MFS domain-containing protein n=1 Tax=Rhodothermaceae bacterium RA TaxID=1779382 RepID=A0A1V0DGR1_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 9.060e-21
Identity = 54/120 (45.00%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    7 GRRGQIMAVTAFMMTICLVFMGLIPPHSGQFFPVILTCAVALLLLGPYCFLGGAISMELGGSKGSATAAGLVDAAGYIGGTLSGVAVGAMAQKWGWGGAFTTLAAFSLMVCLASAAYSWR 366
             RRG +M      +   L  MG+I   +    P++L    ALL++GPY FL GAIS++LGG +GS+TAAGL D+AGY GG LSG  +GA+AQ+ GW   F  LA  + +  +A+  Y WR
Sbjct:  191 ARRGVVMVGALLPLVFVLGGMGMIQTAATATVPLLLVSLAALLMIGPYSFLAGAISLDLGGKQGSSTAAGLADSAGYFGGILSGWGIGAIAQRSGWDAVFLALAGIAALTLVAAFLY-WR 309          
BLAST of mRNA_P-wetherbeei_contig20409.1.1 vs. uniprot
Match: A0A6N9AKI8_9BACT (MFS transporter n=2 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A6N9AKI8_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 2.190e-20
Identity = 54/128 (42.19%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    7 GRRGQIMAVTAFMMTICLVFMGLIPPHSGQFFPVILTCAVALLLLGPYCFLGGAISMELGGSKGSATAAGLVDAAGYIGGTLSGVAVGAMAQKWGWGGAFTTLAAFSLMVCLASAAYSWRHEGTSASR 390
            G+R   +      +   L  MG I   S    P++L  A A+L++GPY FL GAIS++LGG  GS+T +GL+DAAGY+G   SG+ +G++AQ+ GW  AF +LA  +L+   A+ AY WR +   A R
Sbjct:  303 GKRSVAILAGLVPLVAILGIMGSIREPSSAVLPLVLVSAAAMLMIGPYSFLAGAISLDLGGKVGSSTTSGLIDAAGYLGAIASGIGIGSLAQRAGWDAAFGSLAIVALVTVGATVAY-WRFQEHLAER 429          
BLAST of mRNA_P-wetherbeei_contig20409.1.1 vs. uniprot
Match: A0A3M2F0F1_9BACT (MFS transporter n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M2F0F1_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 2.450e-20
Identity = 54/120 (45.00%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    7 GRRGQIMAVTAFMMTICLVFMGLIPPHSGQFFPVILTCAVALLLLGPYCFLGGAISMELGGSKGSATAAGLVDAAGYIGGTLSGVAVGAMAQKWGWGGAFTTLAAFSLMVCLASAAYSWR 366
             RRG +M      +   L  MG+I   +    P++L    ALL++GPY FL GAIS++LGG +GS+TAAGL D+AGY GG LSG  +GA+AQ+ GW   F  LA  + +  +A+  Y WR
Sbjct:  306 ARRGVVMVGALLPLVFVLGGMGMIQTAATATVPLLLVSLAALLMIGPYSFLAGAISLDLGGKQGSSTAAGLADSAGYFGGILSGWGIGAIAQRSGWDAVFLALAGIAALTLVAAFLY-WR 424          
BLAST of mRNA_P-wetherbeei_contig20409.1.1 vs. uniprot
Match: A0A2T2YK43_9BACT (MFS domain-containing protein n=2 Tax=Adhaeribacter arboris TaxID=2072846 RepID=A0A2T2YK43_9BACT)

HSP 1 Score: 94.7 bits (234), Expect = 3.020e-20
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 1
Query:    1 MKGRRGQIMAVTAFMMTICLVFMGLIPPHSGQFFPVILTCAVALLLLGPYCFLGGAISMELGGSKGSATAAGLVDAAGYIGGTLSGVAVGAMAQKWGWGGAFTTLAAFSLMVCLASAAYSWRHEGTSA 384
            MKG RG ++A    ++T+ L FM +    +GQ  P+I      LLLLGPY FL GA+S+++GG KG+ATA GLVDA GY+GGTL+    G +A+  GW  AF  LAA ++     +  Y    E  SA
Sbjct:  300 MKGVRGLLIAGAGMLLTVVLGFMAV--GFTGQILPLIFISLAGLLLLGPYSFLAGAMSLDVGGPKGAATAGGLVDAVGYLGGTLALWLTGFLAEYVGWNAAFLALAAMAVGTACTAFIYYRTQESHSA 425          
BLAST of mRNA_P-wetherbeei_contig20409.1.1 vs. uniprot
Match: A0A6C0GFL8_9BACT (MFS transporter n=1 Tax=Rhodocytophaga rosea TaxID=2704465 RepID=A0A6C0GFL8_9BACT)

HSP 1 Score: 94.0 bits (232), Expect = 5.680e-20
Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    1 MKGRRGQIMAVTAFMMTICLVFMGLIPPHSGQFFPVILTCAVALLLLGPYCFLGGAISMELGGSKGSATAAGLVDAAGYIGGTLSGVAVGAMAQKWGWGGAFTTLAAFSLMVCLASAAYSWRHE 372
            +KG+RG ++A     + + L  M L     GQ  P++L     LL+LGPY FL GA+SM++GG KG+ATA GL+DA GY+GGTL+    G +AQ+ GW  AF TLA  + +  +++  Y    E
Sbjct:  305 LKGKRGILIAGACLPIAVVLAVMAL--GLKGQVIPLVLISLAGLLVLGPYSFLAGAMSMDVGGPKGAATAVGLIDAVGYVGGTLAVWLTGLLAQRIGWTSAFVTLAVIAALTGISAFVYYLTQE 426          
BLAST of mRNA_P-wetherbeei_contig20409.1.1 vs. uniprot
Match: A0A369QBL5_9BACT (MFS domain-containing protein n=2 Tax=Adhaeribacter pallidiroseus TaxID=2072847 RepID=A0A369QBL5_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 8.020e-19
Identity = 53/124 (42.74%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 MKGRRGQIMAVTAFMMTICLVFMGLIPPHSGQFFPVILTCAVALLLLGPYCFLGGAISMELGGSKGSATAAGLVDAAGYIGGTLSGVAVGAMAQKWGWGGAFTTLAAFSLMVCLASAAYSWRHE 372
            +KG RG+I+ V + ++ + L  M      +G++ P++      LLLLGPY FL GA+S++ GG KG+ATAAGLVDA GY+GGTL+    G +A+  GW  AF  LA  +L+  + +A Y +R +
Sbjct:  313 LKGGRGRIIWVASLLLALVLGLMA--AGFTGEYLPLVFISLTGLLLLGPYSFLAGAMSLDAGGHKGAATAAGLVDAVGYLGGTLALWLTGFLAEHAGWNTAFLFLAGLALITAI-TALYYYRSQ 433          
BLAST of mRNA_P-wetherbeei_contig20409.1.1 vs. uniprot
Match: UPI001AAFCFFD (MFS transporter n=1 Tax=Hymenobacter negativus TaxID=2795026 RepID=UPI001AAFCFFD)

HSP 1 Score: 90.1 bits (222), Expect = 1.530e-18
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    1 MKGRRGQIMAVTAFMMTICLVFMGLIPPHSGQFFPVILTCAVALLLLGPYCFLGGAISMELGGSKGSATAAGLVDAAGYIGGTLSGVAVGAMAQKWGWGGAFTTLAAFSLMVCLAS 348
            ++G+RG ++      +   LV M    P SG   P++L   V LLLLGPY FL GA++++ GG +G+ATAAGLVDA GY+GGT +    G +A+  GW GAF  LAA +    +A+
Sbjct:  302 LRGQRGPLLLAACLGLVPVLVLMA--QPTSGGLLPLVLISLVGLLLLGPYSFLAGAMALDAGGRQGAATAAGLVDAVGYVGGTGALWLTGRLAEHQGWSGAFLALAALAAATAVAA 415          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20409.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A847JXC2_9BACT5.150e-2344.35MFS transporter n=1 Tax=Chthonomonadales bacterium... [more]
A0A7K2C6F0_9BACT9.820e-2241.98MFS transporter n=3 Tax=Bacteria TaxID=2 RepID=A0A... [more]
A0A6J4J708_9SPHI2.280e-2144.72MFS domain-containing protein n=1 Tax=uncultured C... [more]
A0A1V0DGR1_9BACT9.060e-2145.00MFS domain-containing protein n=1 Tax=Rhodothermac... [more]
A0A6N9AKI8_9BACT2.190e-2042.19MFS transporter n=2 Tax=Rhodothermaceae bacterium ... [more]
A0A3M2F0F1_9BACT2.450e-2045.00MFS transporter n=1 Tax=Bacteroidetes bacterium Ta... [more]
A0A2T2YK43_9BACT3.020e-2044.53MFS domain-containing protein n=2 Tax=Adhaeribacte... [more]
A0A6C0GFL8_9BACT5.680e-2042.74MFS transporter n=1 Tax=Rhodocytophaga rosea TaxID... [more]
A0A369QBL5_9BACT8.020e-1942.74MFS domain-containing protein n=2 Tax=Adhaeribacte... [more]
UPI001AAFCFFD1.530e-1843.97MFS transporter n=1 Tax=Hymenobacter negativus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20409contigP-wetherbeei_contig20409:831..1226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1210884.HG799462_gene8658
PFAMsMFS_1
Model size396
Max annot lvl203682|Planctomycetes
KEGG koko:K02445
KEGG TC2.A.1.4.3
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.96e-16
EggNOG OGsCOG2271@1|root,COG2271@2|Bacteria,2IYU6@203682|Planctomycetes
DescriptionMajor Facilitator Superfamily
Cds size396
COG categoryG
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186198.9183557-CDS-P-wetherbeei_contig20409:830..12261683186198.9183557-CDS-P-wetherbeei_contig20409:830..1226Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20409 831..1226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20409.1.1prot_P-wetherbeei_contig20409.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20409 831..1226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20409.1.1

>prot_P-wetherbeei_contig20409.1.1 ID=prot_P-wetherbeei_contig20409.1.1|Name=mRNA_P-wetherbeei_contig20409.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
MKGRRGQIMAVTAFMMTICLVFMGLIPPHSGQFFPVILTCAVALLLLGPY
CFLGGAISMELGGSKGSATAAGLVDAAGYIGGTLSGVAVGAMAQKWGWGG
AFTTLAAFSLMVCLASAAYSWRHEGTSASRK*
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mRNA from alignment at P-wetherbeei_contig20409:831..1226-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20409.1.1 ID=mRNA_P-wetherbeei_contig20409.1.1|Name=mRNA_P-wetherbeei_contig20409.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig20409:831..1226- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGGCCGACGCGGGCAGATTATGGCCGTGACTGCATTCATGATGAC CATCTGTCTGGTTTTCATGGGACTCATCCCTCCCCATAGCGGCCAGTTCT TTCCCGTCATCTTGACCTGCGCCGTCGCCCTGCTCTTACTAGGGCCTTAC TGCTTTCTGGGAGGCGCTATCTCCATGGAACTCGGCGGGTCCAAGGGGAG CGCAACGGCGGCCGGACTCGTGGATGCCGCTGGCTACATCGGTGGCACTC TTTCGGGAGTCGCAGTGGGCGCTATGGCGCAAAAGTGGGGCTGGGGAGGT GCTTTCACTACGCTGGCAGCCTTCTCTTTGATGGTTTGCCTGGCTTCGGC CGCCTATAGCTGGCGTCACGAGGGGACCTCGGCCTCCCGCAAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20409:831..1226-

>mRNA_P-wetherbeei_contig20409.1.1 ID=mRNA_P-wetherbeei_contig20409.1.1|Name=mRNA_P-wetherbeei_contig20409.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig20409:831..1226- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGGCCGACGCGGGCAGATTATGGCCGTGACTGCATTCATGATGAC
CATCTGTCTGGTTTTCATGGGACTCATCCCTCCCCATAGCGGCCAGTTCT
TTCCCGTCATCTTGACCTGCGCCGTCGCCCTGCTCTTACTAGGGCCTTAC
TGCTTTCTGGGAGGCGCTATCTCCATGGAACTCGGCGGGTCCAAGGGGAG
CGCAACGGCGGCCGGACTCGTGGATGCCGCTGGCTACATCGGTGGCACTC
TTTCGGGAGTCGCAGTGGGCGCTATGGCGCAAAAGTGGGGCTGGGGAGGT
GCTTTCACTACGCTGGCAGCCTTCTCTTTGATGGTTTGCCTGGCTTCGGC
CGCCTATAGCTGGCGTCACGAGGGGACCTCGGCCTCCCGCAAATAG
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