mRNA_P-wetherbeei_contig20403.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20403.1.1
Unique NamemRNA_P-wetherbeei_contig20403.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20403.1.1 vs. uniprot
Match: A0A7S0MJT6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MJT6_9CRYP)

HSP 1 Score: 59.3 bits (142), Expect = 1.540e-8
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   16 NCLTAAEFYKALA----ATAADHRGRFGSVDLLIMGIESSLWMGEQFGGDIRKAFPGLNVVVASANKVLGSSATT 228
            N  TAAEF + L       A D  GR   VD+L+ G+E+SLW+GEQF  D++  FP L VV  SANK++G  + T
Sbjct:  268 NRRTAAEFLRLLQEQQRTRAHDSSGRL-EVDVLVTGVEASLWIGEQFASDLQTLFPALRVVPISANKIVGVLSNT 341
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BLAST of mRNA_P-wetherbeei_contig20403.1.1 vs. uniprot
Match: A0A482T860_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T860_9ARCH)

HSP 1 Score: 57.8 bits (138), Expect = 5.880e-8
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   88 SVDLLIMGIESSLWMGEQFGGDIRKAFPGLNVVVASANKVLG 213
            ++DLLI G+E SLW+ EQF  D+R+ FP LNV  ASANK+LG
Sbjct:  467 TIDLLIGGVEVSLWLAEQFAADLRRIFPHLNVATASANKLLG 508
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BLAST of mRNA_P-wetherbeei_contig20403.1.1 vs. uniprot
Match: A0A433V3Q6_9CYAN (Glutamine amidotransferase type-2 domain-containing protein n=2 Tax=Chroococcidiopsis TaxID=54298 RepID=A0A433V3Q6_9CYAN)

HSP 1 Score: 56.2 bits (134), Expect = 2.040e-7
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   34 EFYKALAATAADHRGRFGSVDLLIMGIESSLWMGEQFGGDIRKAFPGLNVVVASANKVL 210
            ++ K + A   +H  +  SVDLL+ G+E+SLW+GE+F  D++  FP LNV V S+N+VL
Sbjct:  730 KWQKMVRAGLTEHMQQLPSVDLLVTGVENSLWLGERFAQDLKIVFPRLNVRVISSNEVL 788
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BLAST of mRNA_P-wetherbeei_contig20403.1.1 vs. uniprot
Match: A0A7S1V2G1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V2G1_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.180e-7
Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   85 GSVDLLIMGIESSLWMGEQFGGDIRKAFPGLNVVVASANKVLGS 216
            G+VD+L+ G E+SLW+ EQFG D++KAFP L +   S+NK+LG+
Sbjct:  185 GTVDILLTGCETSLWLAEQFGCDLQKAFPHLYIRAVSSNKLLGT 228
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BLAST of mRNA_P-wetherbeei_contig20403.1.1 vs. uniprot
Match: UPI000D074D8C (hypothetical protein n=1 Tax=Chroococcidiopsis cubana TaxID=171392 RepID=UPI000D074D8C)

HSP 1 Score: 54.7 bits (130), Expect = 7.130e-7
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   43 KALAATAADHRGRFGSVDLLIMGIESSLWMGEQFGGDIRKAFPGLNVVVASANKVL 210
            K + A    H  +  SVDLL+ G+E+SLW+GE+F  D++  FP LNV V S+N+VL
Sbjct:  298 KMVRAGLTGHMQQLPSVDLLVTGVENSLWLGERFAQDLKIVFPWLNVRVISSNEVL 353
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BLAST of mRNA_P-wetherbeei_contig20403.1.1 vs. uniprot
Match: A0A813E114_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E114_POLGL)

HSP 1 Score: 54.7 bits (130), Expect = 7.130e-7
Identity = 26/66 (39.39%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:   16 NCLTAAEFYKALAATAADHRGRFGSVDLLIMGIESSLWMGEQFGGDIRKAFPGLNVVVASANKVLG 213
            N ++  +F   L         +   +D+L++GIE+SLWMG+QF  D+ + FP LNV+  S+N VLG
Sbjct:  764 NRISGVKFANCLGYLINQRNAKGPDIDVLVIGIENSLWMGQQFAADLSRLFPRLNVMAMSSNWVLG 829
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BLAST of mRNA_P-wetherbeei_contig20403.1.1 vs. uniprot
Match: K9TTS5_CHRTP (Glutamine amidotransferase type-2 domain-containing protein n=7 Tax=Chroococcidiopsidales TaxID=1890505 RepID=K9TTS5_CHRTP)

HSP 1 Score: 54.7 bits (130), Expect = 7.210e-7
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   43 KALAATAADHRGRFGSVDLLIMGIESSLWMGEQFGGDIRKAFPGLNVVVASANKVL 210
            K + A    H  +  SVDLL+ G+E+SLW+GE+F  D++  FP LNV V S+N+VL
Sbjct:  701 KMVRAGLTGHMQQLPSVDLLVTGVENSLWLGERFAQDLKIVFPWLNVRVISSNEVL 756
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BLAST of mRNA_P-wetherbeei_contig20403.1.1 vs. uniprot
Match: A0A813I3R5_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I3R5_POLGL)

HSP 1 Score: 54.7 bits (130), Expect = 7.260e-7
Identity = 26/66 (39.39%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:   16 NCLTAAEFYKALAATAADHRGRFGSVDLLIMGIESSLWMGEQFGGDIRKAFPGLNVVVASANKVLG 213
            N ++  +F   L         +   +D+L++GIE+SLWMG+QF  D+ + FP LNV+  S+N VLG
Sbjct:  761 NRMSGVKFANCLGYLINQRNAKGPDIDVLVIGIENSLWMGQQFAADLSRLFPRLNVMAMSSNWVLG 826
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BLAST of mRNA_P-wetherbeei_contig20403.1.1 vs. uniprot
Match: A0A835VV21_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VV21_CHLIN)

HSP 1 Score: 54.3 bits (129), Expect = 9.950e-7
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   58 TAADHRGRFGSVDLLIMGIESSLWMGEQFGGDIRKAFPGLNVVVASANKVL 210
            +AAD  G    VDLL+ G+E+SLW+ EQ+ GD++  FP LNV+  SANKV+
Sbjct: 1440 SAADRPG----VDLLLTGVEASLWLAEQWAGDLKLVFPQLNVLALSANKVI 1486
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BLAST of mRNA_P-wetherbeei_contig20403.1.1 vs. uniprot
Match: A0A835XFB4_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XFB4_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 1.250e-6
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   73 RGRFGSVDLLIMGIESSLWMGEQFGGDIRKAFPGLNVVVASANKVLG 213
            +G    VDLL+ G+E+SLW+ EQ+ GD++  FP LNV   SANKV G
Sbjct:  161 QGAPAGVDLLVTGVEASLWLAEQWAGDLKLVFPQLNVQAVSANKVGG 207
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20403.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0MJT6_9CRYP1.540e-846.67Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A482T860_9ARCH5.880e-861.90Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A433V3Q6_9CYAN2.040e-745.76Glutamine amidotransferase type-2 domain-containin... [more]
A0A7S1V2G1_9STRA5.180e-754.55Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
UPI000D074D8C7.130e-748.21hypothetical protein n=1 Tax=Chroococcidiopsis cub... [more]
A0A813E114_POLGL7.130e-739.39Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
K9TTS5_CHRTP7.210e-748.21Glutamine amidotransferase type-2 domain-containin... [more]
A0A813I3R5_POLGL7.260e-739.39Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
A0A835VV21_CHLIN9.950e-752.94Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A835XFB4_9CHLO1.250e-653.19Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20403contigP-wetherbeei_contig20403:895..1122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2903.EOD36624
PFAMsEF-hand_5,EF-hand_7,EF-hand_8
Model size228
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.67e-08
EggNOG OGs29176@1|root,2R831@2759|Eukaryota
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186198.7616532-CDS-P-wetherbeei_contig20403:894..11221683186198.7616532-CDS-P-wetherbeei_contig20403:894..1122Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20403 895..1122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20403.1.1prot_P-wetherbeei_contig20403.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20403 895..1122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20403.1.1

>prot_P-wetherbeei_contig20403.1.1 ID=prot_P-wetherbeei_contig20403.1.1|Name=mRNA_P-wetherbeei_contig20403.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
MQRSSNCLTAAEFYKALAATAADHRGRFGSVDLLIMGIESSLWMGEQFGG
DIRKAFPGLNVVVASANKVLGSSATT
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mRNA from alignment at P-wetherbeei_contig20403:895..1122-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20403.1.1 ID=mRNA_P-wetherbeei_contig20403.1.1|Name=mRNA_P-wetherbeei_contig20403.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig20403:895..1122- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCGATCCTCCAACTGCCTCACCGCCGCCGAGTTCTACAAGGCGCT
CGCCGCCACCGCCGCCGATCACCGGGGTCGTTTTGGCTCCGTCGACCTCC
TGATAATGGGCATCGAGTCCAGTCTGTGGATGGGGGAGCAGTTCGGCGGC
GACATCCGCAAGGCGTTTCCCGGGCTGAACGTGGTGGTGGCGTCGGCGAA
CAAGGTGCTGGGCAGCTCGGCCACGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20403:895..1122-

>mRNA_P-wetherbeei_contig20403.1.1 ID=mRNA_P-wetherbeei_contig20403.1.1|Name=mRNA_P-wetherbeei_contig20403.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig20403:895..1122- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCGATCCTCCAACTGCCTCACCGCCGCCGAGTTCTACAAGGCGCT
CGCCGCCACCGCCGCCGATCACCGGGGTCGTTTTGGCTCCGTCGACCTCC
TGATAATGGGCATCGAGTCCAGTCTGTGGATGGGGGAGCAGTTCGGCGGC
GACATCCGCAAGGCGTTTCCCGGGCTGAACGTGGTGGTGGCGTCGGCGAA
CAAGGTGCTGGGCAGCTCGGCCACGACG
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