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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1457 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Cds size | 738 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186198.0215855-UTR-P-wetherbeei_contig2038:3475..3683 | 1683186198.0215855-UTR-P-wetherbeei_contig2038:3475..3683 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig2038 3476..3683 + |
| 1683186198.031016-UTR-P-wetherbeei_contig2038:3926..4088 | 1683186198.031016-UTR-P-wetherbeei_contig2038:3926..4088 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig2038 3927..4088 + |
| 1683186198.0651612-UTR-P-wetherbeei_contig2038:5166..5515 | 1683186198.0651612-UTR-P-wetherbeei_contig2038:5166..5515 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig2038 5167..5515 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186198.0406063-CDS-P-wetherbeei_contig2038:4088..4118 | 1683186198.0406063-CDS-P-wetherbeei_contig2038:4088..4118 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig2038 4089..4118 + |
| 1683186198.0501616-CDS-P-wetherbeei_contig2038:4458..5166 | 1683186198.0501616-CDS-P-wetherbeei_contig2038:4458..5166 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig2038 4459..5166 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig2038.2.1 >prot_P-wetherbeei_contig2038.2.1 ID=prot_P-wetherbeei_contig2038.2.1|Name=mRNA_P-wetherbeei_contig2038.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=246bp
MKAWEATANEGGPSGAAAGDAAHPLQRLSQTAREVVEAGVNGEKLFSLRI
VQRRRLSGDEDKASMVAAAAPAAAATPGAAAVATPAAAVPSTGGGSGSGS
PEEPAAGGGSGGAGASSAGCKETEPNSATDQFVRRDGPGRGSLSVTIAAP
IMAGGGTGPTTIATAAAAVAPAATSVPATPRRMAGGAFAQLLDQSKGAGQ
VLHSGRAHKMAARVDASSAAAVAEGGGSGVGANVKDGLAVPERDP* back to topmRNA from alignment at P-wetherbeei_contig2038:3476..5515+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig2038.2.1 ID=mRNA_P-wetherbeei_contig2038.2.1|Name=mRNA_P-wetherbeei_contig2038.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2040bp|location=Sequence derived from alignment at P-wetherbeei_contig2038:3476..5515+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGGCGCGGCTGCATGCCGCGGCGGCGGACGCGGGCCTTGCGGAGGGAC
GGCTTTTGGAAGGGGAGGCAGCAGCAGCGGGGGAGAAGTGGGAGCGAGTT
GTCGTCGCCACCGCGCTGTTCTTGGCGACGGCGGCGGTGCAGCAGCGGCT
TGCGCGCCGCGCCGAGTCGCTCGACCTCGCCCGCCGCTACGACGACGAGA
TCTGCCAGGTGCACCACGACAAAGCTTTTTCCTTCTTTGATTTGAGTGCT
ACAGCACACAGTTTAGACTTGCCGCACCTTCCTTTGATGACAGCCGGCCG
CGTTCAGATTCTATGTGCTGCCTGTCCTGTTGGTACTTCTACGTCACCTG
CCCGCATGCTTTATTCATGATGGTGATAAATCTTTTAGGCAAGTTCCACA
ACATGCTTTGCCCCTCTCTCTTCGCCGCTCTACCAATGGCAAATCATGCA
GCTGGTGGCGGCGGCGCGGGCGTACAATGCAGCGCGCGACCCGAAGCGGT
TATGCAACAAGAAGGTGTCGGCGGTGTACCTCCTCGGGGAGGAGAAGGAG
ACAGGCAAGAAACAGCAGCAGTTCGCCAAAGCGCGCCAGAAGCTCGTGGC
GCTCGTCACGGAGATGAAGGCATGGGAGGCGACGGCTAACGAGGTGGGTC
CTAGGCAGGTCTGGTCATGGCCGAGCAGGCAAAGCGGGCGCAACTGAGCT
AATTGGCATAGGAAGCCGTTGCAAGCCCGTGCTTTCGAAACCTTGCAGCA
TGCCTTTAAAGTTAAAAGAGGCCGCGGGGCCAGGGTCTGCTTCTGGTAAC
TGTTTGTTAAGGCTAGCACTGCCTATGTTTTCGTCCGGTCTGGAGTCGCT
ACTAAAATGGATGTATCCCATTGTATTGGTCATCCTCTCTTACCGGTCGT
TCTCCCTCACCGATGTAGCTTCTCCTTTCTAGCTCTTCAAACCTCAGTGT
CCGTCATTCCCCCCATCCGGCTTTGGTGAACAGGGCGGCCCTTCCGGCGC
GGCGGCCGGCGATGCGGCGCACCCGCTGCAGCGGCTGTCACAGACGGCGC
GGGAGGTGGTGGAGGCGGGCGTTAACGGCGAGAAGCTCTTCAGCCTGCGG
ATCGTCCAGCGCCGCCGCCTCAGCGGCGACGAGGACAAGGCCTCGATGGT
GGCGGCGGCAGCACCGGCGGCGGCGGCCACGCCCGGCGCGGCGGCTGTCG
CTACGCCCGCCGCGGCCGTGCCGTCGACGGGTGGGGGCAGCGGCAGTGGT
AGTCCGGAGGAGCCTGCCGCAGGCGGCGGCAGTGGCGGCGCCGGCGCTTC
CTCTGCGGGCTGCAAGGAAACAGAGCCAAATTCCGCCACAGACCAATTCG
TGCGTCGGGACGGGCCGGGGCGGGGCTCGCTCTCAGTCACCATAGCGGCG
CCGATAATGGCAGGAGGCGGGACGGGGCCCACGACGATTGCGACGGCCGC
TGCGGCGGTGGCACCCGCCGCTACTTCGGTGCCGGCGACGCCGCGGCGCA
TGGCGGGAGGTGCCTTCGCGCAGCTGCTGGACCAGAGCAAAGGCGCGGGG
CAGGTGCTACACTCTGGGCGGGCGCACAAGATGGCGGCACGCGTCGACGC
CTCTTCAGCTGCCGCCGTTGCCGAGGGTGGTGGCAGTGGCGTGGGCGCTA
ACGTTAAGGATGGGCTGGCGGTGCCGGAGCGTGACCCGTGAGCTCAGGGC
CGCGAAACTTTCCGCCGGATCGGGCTGGAGCGAGCCGGCAGAGAAGCGAT
TTCTCTCGTTACTTATGAAATCTAGCTTGTTACAACATCGGCGCGTTCGG
CTAGCGCCTATAATGAGCTGTGCGTCAGTCATGTGGCGCGGCTCCCTTGA
TGGCGGCCAGTTAAAAAGTTTTCATGGGGGCATGGCAAGCGTTGGAAACA
CGGAATTCCGGAGATTTTTATTCATGCTTTTAAGAGCGGGCGGATGGACG
GCACCGGGCTGGCAACATCACAGCGCTGGACGATGGAATTGAGTCGGGAC
AAATGGGCGGGCGATAGTAATACAGAGAGACAAGCACCGA back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig2038:3476..5515+ >mRNA_P-wetherbeei_contig2038.2.1 ID=mRNA_P-wetherbeei_contig2038.2.1|Name=mRNA_P-wetherbeei_contig2038.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=738bp|location=Sequence derived from alignment at P-wetherbeei_contig2038:3476..5515+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGCATGGGAGGCGACGGCTAACGAGGGCGGCCCTTCCGGCGCGGC
GGCCGGCGATGCGGCGCACCCGCTGCAGCGGCTGTCACAGACGGCGCGGG
AGGTGGTGGAGGCGGGCGTTAACGGCGAGAAGCTCTTCAGCCTGCGGATC
GTCCAGCGCCGCCGCCTCAGCGGCGACGAGGACAAGGCCTCGATGGTGGC
GGCGGCAGCACCGGCGGCGGCGGCCACGCCCGGCGCGGCGGCTGTCGCTA
CGCCCGCCGCGGCCGTGCCGTCGACGGGTGGGGGCAGCGGCAGTGGTAGT
CCGGAGGAGCCTGCCGCAGGCGGCGGCAGTGGCGGCGCCGGCGCTTCCTC
TGCGGGCTGCAAGGAAACAGAGCCAAATTCCGCCACAGACCAATTCGTGC
GTCGGGACGGGCCGGGGCGGGGCTCGCTCTCAGTCACCATAGCGGCGCCG
ATAATGGCAGGAGGCGGGACGGGGCCCACGACGATTGCGACGGCCGCTGC
GGCGGTGGCACCCGCCGCTACTTCGGTGCCGGCGACGCCGCGGCGCATGG
CGGGAGGTGCCTTCGCGCAGCTGCTGGACCAGAGCAAAGGCGCGGGGCAG
GTGCTACACTCTGGGCGGGCGCACAAGATGGCGGCACGCGTCGACGCCTC
TTCAGCTGCCGCCGTTGCCGAGGGTGGTGGCAGTGGCGTGGGCGCTAACG
TTAAGGATGGGCTGGCGGTGCCGGAGCGTGACCCGTGA back to top
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