mRNA_P-wetherbeei_contig2038.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2038.1.1
Unique NamemRNA_P-wetherbeei_contig2038.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2038.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2038contigP-wetherbeei_contig2038:3..3414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2864
Hectar predicted targeting categoryother localisation
Exons3
Cds size2862
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.9758818-CDS-P-wetherbeei_contig2038:2..1661683186197.9758818-CDS-P-wetherbeei_contig2038:2..166Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2038 3..166 +
1683186197.9856498-CDS-P-wetherbeei_contig2038:532..6441683186197.9856498-CDS-P-wetherbeei_contig2038:532..644Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2038 533..644 +
1683186197.9943776-CDS-P-wetherbeei_contig2038:827..34131683186197.9943776-CDS-P-wetherbeei_contig2038:827..3413Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2038 828..3413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2038.1.1prot_P-wetherbeei_contig2038.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2038 3..3413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2038.1.1

>prot_P-wetherbeei_contig2038.1.1 ID=prot_P-wetherbeei_contig2038.1.1|Name=mRNA_P-wetherbeei_contig2038.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=954bp
GGEGYAASGDGEAEDAAARELAVLLAGLEAAEARALLGSIWEGYVTMSVE
EFHAQQAAQEKDAELVRLREEVTEAKKLTTRQAQGYSRRLSLMESDNRKE
LVKLSMLEAESSSMSGVAVGSGSVMDVYGRDADGVESAEATDRIMMGLGA
QARSPKERRYSGGAGAGSSRASGGGGGGRISGGGGGGGSLSMYRSPGLQS
PAGPGRRSGGGAWGGGDDASRRTSGQLWGGDAAAAAAAVARRASGQQIEA
LTGRHRELEKEAFDATAAAAAAKLQAQQLERELSRERAKCTELSERLALA
EHVAAAAGGSVEGGNGDGDSSSTGASGAEAAAEAARLHSLWRDLGVDGAV
RQEGLARVASAVTREVKLQADAAALQRAEAAEEATKLREELSALEAAMLG
PGAATAEVRPFCKVVANEGVAATAAAVAVTVAAVSTAVAVAEETAAAWGE
SSVPLLEDLQKKQFQVDTMRVAAAAGLKRRAELRLKALALVRAVGIPPLP
NRGGGESGGNDGFGGTRSSARLLVLLLRRRFVCPTDLHWEPCLMDPASQE
LLTVEEDGAYFYTLAGDLPTEELRAATATAAAAGAAAMSSGAGGMESGVV
NDNAFMAGLDVSEKALKAFEREVKALSIHKAQVEADCRVARDAAAAATAE
LDASPEDVVALSTEFFIASANAAPAVAAAAAADDAATVSAGRERAAAAAA
AAAAVSLPGELDRSALEYCAALTCDPRAQYVKVTPARTAHLRLCGAALAA
AATRRRRVVVALKTLVALAHTMEAGAAAAGSGVSGPGGIADSGGETEAAA
PEGADADGNAGGGGHMGTSGAHESLAAVHAAAAAALAAVAADAPPSYGEF
SATLDEKRCALSPGALRAYCNELGRIAETLMKRASRCRSTMDTQWDPAGL
DSSDRQRVEAQLAALTLPPSSPAAAVVAASAVAAVAAAAGGSASAVLAVA
AAGA
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mRNA from alignment at P-wetherbeei_contig2038:3..3414+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2038.1.1 ID=mRNA_P-wetherbeei_contig2038.1.1|Name=mRNA_P-wetherbeei_contig2038.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3412bp|location=Sequence derived from alignment at P-wetherbeei_contig2038:3..3414+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGAGGGCTACGCAGCGTCCGGGGACGGCGAGGCGGAGGACGCGGC
GGCGCGAGAGCTGGCCGTGCTCCTGGCCGGCCTCGAGGCGGCGGAGGCGC
GGGCGCTGCTCGGATCTATCTGGGAGGGCTATGTGACCATGTCGGTAGAG
GAGTTCCACGCGCAGCAGGTGCGTTGCTTGGCCATTTTCGTGTGTTCTGT
CTTGTTTTCGTTGGTCAAGTCCGTGACGGCGGTCCGGCAGCTGCGTCTTG
ATGCTGGAAGTGGTTGTTTGGCGGCAATCTCACCGCAACCGGGGCTTGTG
ACCATGGTTGTGGCATTTTGCGGCGGCTTGGCGTTTGGCGAGGAAGTCTG
TTTGACCAAATAAGTCCGATTTTGCGCAGGGGTTGCAGCATTTGCCGTTT
AATGGTCCCGGTGCGCATGCCTGTCGATTTTAGGCGCTTCTCTCTTTCTG
CGCTGCGAGCGCCTGTGCGCAGAGAGAGGCTGACGTGTGTAGCTGCACTT
TCCGCTCGTTTCCTTTCCTTCACCCGCGAGGCAGGCAGCGCAGGAAAAGG
ACGCTGAGCTGGTGCGGCTGCGGGAGGAGGTCACGGAGGCCAAGAAGCTG
ACGACACGCCAGGCGCAGGGCTACAGCAGGCGCCTTTCGCTGGTGAGTCG
CTACCGCTCGCTCCGCCGCGTTGCGACAGGGGGAAAGGGCAATTCCTGCC
GGTCCGATCCGGTCGGTTATGCACCCGCTTGGCGATCAGTCTGCTCCCTC
CTCTTGTGCCCCTCTGGTGCCATCTTCCAACATGCTGCTGTGTCATTCCG
ATGTTTGTCTTCTTCCCTACCACAGATGGAATCCGACAATCGCAAAGAGC
TCGTAAAGCTCTCTATGCTGGAGGCCGAGTCTTCCAGCATGAGCGGCGTC
GCCGTCGGCAGCGGTTCTGTAATGGATGTGTACGGACGAGACGCGGATGG
TGTCGAGTCCGCCGAGGCCACGGACCGGATAATGATGGGCCTCGGGGCGC
AGGCCCGGAGCCCAAAAGAGCGCCGCTACAGCGGCGGCGCCGGTGCCGGC
AGCAGCAGGGCTAGCGGCGGTGGCGGCGGTGGCCGGATCAGCGGTGGTGG
CGGCGGTGGCGGGTCGCTTTCGATGTACCGGAGCCCGGGGCTGCAGAGCC
CAGCCGGTCCGGGTCGTCGCAGCGGCGGTGGCGCCTGGGGCGGTGGCGAT
GACGCCTCGCGACGGACCAGCGGCCAGCTCTGGGGCGGAGACGCTGCGGC
CGCGGCGGCGGCAGTGGCACGGCGTGCGTCGGGCCAGCAGATCGAGGCGC
TGACAGGACGGCATCGAGAGCTGGAGAAGGAGGCCTTCGACGCCACGGCG
GCGGCCGCCGCCGCCAAGCTCCAGGCGCAGCAGCTGGAGAGGGAGCTGAG
CCGCGAGCGGGCAAAGTGCACCGAGCTCAGCGAACGGCTGGCTCTTGCGG
AGCATGTAGCGGCGGCAGCTGGCGGCAGCGTCGAAGGCGGCAATGGCGAC
GGCGACAGCAGCAGTACTGGCGCCAGTGGCGCAGAGGCGGCGGCGGAAGC
TGCACGGCTCCACAGCCTTTGGCGGGACCTGGGCGTTGACGGCGCCGTCC
GCCAGGAGGGCCTGGCGCGTGTGGCGTCGGCGGTGACGCGGGAGGTGAAG
TTGCAGGCCGACGCGGCGGCGCTGCAGCGGGCAGAGGCGGCCGAAGAAGC
TACAAAGCTCCGAGAAGAGCTTTCAGCGCTCGAAGCAGCCATGCTGGGCC
CCGGCGCGGCAACCGCGGAAGTGCGTCCGTTCTGCAAGGTGGTCGCCAAC
GAAGGGGTGGCAGCGACAGCGGCGGCGGTGGCAGTTACGGTAGCGGCAGT
TTCGACGGCGGTGGCGGTCGCGGAAGAAACGGCAGCGGCGTGGGGCGAAA
GCTCGGTGCCGCTGCTGGAGGATCTGCAAAAAAAACAGTTCCAGGTAGAC
ACGATGCGTGTGGCGGCCGCCGCCGGCCTGAAGCGCCGCGCCGAGCTGCG
TTTGAAGGCGCTAGCACTCGTGCGTGCAGTGGGAATTCCCCCGCTGCCGA
ATCGCGGCGGCGGCGAAAGCGGCGGCAACGATGGCTTTGGCGGGACGCGC
AGCAGCGCGAGGCTGCTCGTGCTGCTGCTGCGGCGGCGCTTCGTCTGCCC
CACCGACCTGCACTGGGAGCCGTGCCTGATGGACCCGGCGAGCCAGGAGC
TGTTGACGGTCGAGGAAGACGGCGCGTACTTTTACACGTTGGCCGGCGAT
CTGCCGACAGAGGAGCTGCGAGCGGCGACAGCGACGGCGGCAGCAGCGGG
CGCGGCGGCGATGTCGTCAGGGGCAGGCGGCATGGAGTCCGGCGTTGTCA
ACGACAACGCGTTTATGGCGGGGCTTGACGTCAGCGAGAAGGCGCTGAAG
GCCTTCGAACGGGAGGTCAAGGCGCTGTCGATCCACAAGGCGCAGGTGGA
GGCGGACTGCCGGGTCGCGCGCGATGCTGCCGCCGCTGCTACCGCTGAAC
TCGACGCCTCGCCTGAGGACGTGGTCGCGCTCTCCACTGAGTTTTTTATT
GCAAGCGCGAATGCCGCGCCGGCTGTGGCTGCGGCGGCGGCGGCGGATGA
CGCTGCGACGGTGTCGGCGGGGAGGGAGAGAGCAGCAGCGGCAGCGGCAG
CGGCTGCCGCGGTTTCTCTCCCGGGAGAGCTGGATCGATCAGCGCTGGAG
TACTGCGCCGCGCTGACCTGCGACCCACGGGCGCAGTACGTCAAGGTGAC
GCCGGCCCGCACTGCGCACCTGCGGCTGTGCGGCGCGGCGCTGGCGGCGG
CGGCGACGCGGCGGCGGCGTGTTGTGGTTGCCCTCAAGACCCTCGTGGCT
CTGGCGCACACGATGGAAGCGGGCGCCGCCGCCGCAGGCAGCGGTGTCAG
CGGACCGGGCGGAATCGCCGACAGCGGTGGAGAAACGGAGGCCGCGGCGC
CAGAGGGCGCCGATGCGGACGGTAATGCCGGCGGTGGCGGCCACATGGGC
ACCAGCGGCGCCCACGAATCATTAGCGGCCGTGCATGCCGCCGCGGCCGC
CGCCCTGGCGGCGGTCGCCGCCGATGCTCCGCCGTCATATGGCGAGTTCT
CGGCGACGCTCGACGAGAAGCGCTGCGCGCTGTCGCCTGGAGCTCTGCGC
GCCTACTGCAACGAGCTGGGCCGCATCGCCGAGACGCTGATGAAACGGGC
GAGCCGCTGCCGCTCCACCATGGATACCCAGTGGGACCCGGCCGGCCTGG
ACAGTTCCGACCGGCAGCGAGTTGAAGCGCAGCTGGCGGCGCTGACACTG
CCGCCGTCTTCGCCGGCGGCAGCGGTGGTGGCGGCGTCGGCGGTGGCGGC
GGTGGCGGCGGCGGCGGGAGGATCCGCTTCTGCGGTGCTGGCGGTCGCGG
CAGCCGGAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2038:3..3414+

>mRNA_P-wetherbeei_contig2038.1.1 ID=mRNA_P-wetherbeei_contig2038.1.1|Name=mRNA_P-wetherbeei_contig2038.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2862bp|location=Sequence derived from alignment at P-wetherbeei_contig2038:3..3414+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGAGGGCTACGCAGCGTCCGGGGACGGCGAGGCGGAGGACGCGGC
GGCGCGAGAGCTGGCCGTGCTCCTGGCCGGCCTCGAGGCGGCGGAGGCGC
GGGCGCTGCTCGGATCTATCTGGGAGGGCTATGTGACCATGTCGGTAGAG
GAGTTCCACGCGCAGCAGGCAGCGCAGGAAAAGGACGCTGAGCTGGTGCG
GCTGCGGGAGGAGGTCACGGAGGCCAAGAAGCTGACGACACGCCAGGCGC
AGGGCTACAGCAGGCGCCTTTCGCTGATGGAATCCGACAATCGCAAAGAG
CTCGTAAAGCTCTCTATGCTGGAGGCCGAGTCTTCCAGCATGAGCGGCGT
CGCCGTCGGCAGCGGTTCTGTAATGGATGTGTACGGACGAGACGCGGATG
GTGTCGAGTCCGCCGAGGCCACGGACCGGATAATGATGGGCCTCGGGGCG
CAGGCCCGGAGCCCAAAAGAGCGCCGCTACAGCGGCGGCGCCGGTGCCGG
CAGCAGCAGGGCTAGCGGCGGTGGCGGCGGTGGCCGGATCAGCGGTGGTG
GCGGCGGTGGCGGGTCGCTTTCGATGTACCGGAGCCCGGGGCTGCAGAGC
CCAGCCGGTCCGGGTCGTCGCAGCGGCGGTGGCGCCTGGGGCGGTGGCGA
TGACGCCTCGCGACGGACCAGCGGCCAGCTCTGGGGCGGAGACGCTGCGG
CCGCGGCGGCGGCAGTGGCACGGCGTGCGTCGGGCCAGCAGATCGAGGCG
CTGACAGGACGGCATCGAGAGCTGGAGAAGGAGGCCTTCGACGCCACGGC
GGCGGCCGCCGCCGCCAAGCTCCAGGCGCAGCAGCTGGAGAGGGAGCTGA
GCCGCGAGCGGGCAAAGTGCACCGAGCTCAGCGAACGGCTGGCTCTTGCG
GAGCATGTAGCGGCGGCAGCTGGCGGCAGCGTCGAAGGCGGCAATGGCGA
CGGCGACAGCAGCAGTACTGGCGCCAGTGGCGCAGAGGCGGCGGCGGAAG
CTGCACGGCTCCACAGCCTTTGGCGGGACCTGGGCGTTGACGGCGCCGTC
CGCCAGGAGGGCCTGGCGCGTGTGGCGTCGGCGGTGACGCGGGAGGTGAA
GTTGCAGGCCGACGCGGCGGCGCTGCAGCGGGCAGAGGCGGCCGAAGAAG
CTACAAAGCTCCGAGAAGAGCTTTCAGCGCTCGAAGCAGCCATGCTGGGC
CCCGGCGCGGCAACCGCGGAAGTGCGTCCGTTCTGCAAGGTGGTCGCCAA
CGAAGGGGTGGCAGCGACAGCGGCGGCGGTGGCAGTTACGGTAGCGGCAG
TTTCGACGGCGGTGGCGGTCGCGGAAGAAACGGCAGCGGCGTGGGGCGAA
AGCTCGGTGCCGCTGCTGGAGGATCTGCAAAAAAAACAGTTCCAGGTAGA
CACGATGCGTGTGGCGGCCGCCGCCGGCCTGAAGCGCCGCGCCGAGCTGC
GTTTGAAGGCGCTAGCACTCGTGCGTGCAGTGGGAATTCCCCCGCTGCCG
AATCGCGGCGGCGGCGAAAGCGGCGGCAACGATGGCTTTGGCGGGACGCG
CAGCAGCGCGAGGCTGCTCGTGCTGCTGCTGCGGCGGCGCTTCGTCTGCC
CCACCGACCTGCACTGGGAGCCGTGCCTGATGGACCCGGCGAGCCAGGAG
CTGTTGACGGTCGAGGAAGACGGCGCGTACTTTTACACGTTGGCCGGCGA
TCTGCCGACAGAGGAGCTGCGAGCGGCGACAGCGACGGCGGCAGCAGCGG
GCGCGGCGGCGATGTCGTCAGGGGCAGGCGGCATGGAGTCCGGCGTTGTC
AACGACAACGCGTTTATGGCGGGGCTTGACGTCAGCGAGAAGGCGCTGAA
GGCCTTCGAACGGGAGGTCAAGGCGCTGTCGATCCACAAGGCGCAGGTGG
AGGCGGACTGCCGGGTCGCGCGCGATGCTGCCGCCGCTGCTACCGCTGAA
CTCGACGCCTCGCCTGAGGACGTGGTCGCGCTCTCCACTGAGTTTTTTAT
TGCAAGCGCGAATGCCGCGCCGGCTGTGGCTGCGGCGGCGGCGGCGGATG
ACGCTGCGACGGTGTCGGCGGGGAGGGAGAGAGCAGCAGCGGCAGCGGCA
GCGGCTGCCGCGGTTTCTCTCCCGGGAGAGCTGGATCGATCAGCGCTGGA
GTACTGCGCCGCGCTGACCTGCGACCCACGGGCGCAGTACGTCAAGGTGA
CGCCGGCCCGCACTGCGCACCTGCGGCTGTGCGGCGCGGCGCTGGCGGCG
GCGGCGACGCGGCGGCGGCGTGTTGTGGTTGCCCTCAAGACCCTCGTGGC
TCTGGCGCACACGATGGAAGCGGGCGCCGCCGCCGCAGGCAGCGGTGTCA
GCGGACCGGGCGGAATCGCCGACAGCGGTGGAGAAACGGAGGCCGCGGCG
CCAGAGGGCGCCGATGCGGACGGTAATGCCGGCGGTGGCGGCCACATGGG
CACCAGCGGCGCCCACGAATCATTAGCGGCCGTGCATGCCGCCGCGGCCG
CCGCCCTGGCGGCGGTCGCCGCCGATGCTCCGCCGTCATATGGCGAGTTC
TCGGCGACGCTCGACGAGAAGCGCTGCGCGCTGTCGCCTGGAGCTCTGCG
CGCCTACTGCAACGAGCTGGGCCGCATCGCCGAGACGCTGATGAAACGGG
CGAGCCGCTGCCGCTCCACCATGGATACCCAGTGGGACCCGGCCGGCCTG
GACAGTTCCGACCGGCAGCGAGTTGAAGCGCAGCTGGCGGCGCTGACACT
GCCGCCGTCTTCGCCGGCGGCAGCGGTGGTGGCGGCGTCGGCGGTGGCGG
CGGTGGCGGCGGCGGCGGGAGGATCCGCTTCTGCGGTGCTGGCGGTCGCG
GCAGCCGGAGCG
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