mRNA_P-wetherbeei_contig20370.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20370.1.1
Unique NamemRNA_P-wetherbeei_contig20370.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20370.1.1 vs. uniprot
Match: A0A7Z9PWQ9_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PWQ9_9BACT)

HSP 1 Score: 197 bits (502), Expect = 7.160e-60
Identity = 100/193 (51.81%), Postives = 135/193 (69.95%), Query Frame = 1
Query:   13 QAKYDYYKGLVEANQGKIEDGVDTVLGLRGLGKDGTRHDSAQNIGPYNDTFVLLSKDGAGQPSVTELTGSTHAGQKSSTVSPDGVAQLRPGSFQATPHGEHDGMPSWHITTQSGDDHVPAWRDVNKDGYISGQEKAQAEKAGTTATAILFHNGKFADHGSSIGCQVMPPEVMQSFISLVGVDKSFNYTLVDAN 591
            +A+Y+YY+ L     G   DG+ TVLG RG+  DG RH S  N  PY+DTFV+L+       +VT L GSTHAGQ +ST+SP GVAQ++PGS++A P GE+  M  W +T  SG++ VP WRD N +G++  QEK    ++G TAT ILFHNG++ D+GSSIGCQV+PPE+M+ FI  VG + SF++ L+DAN
Sbjct:   94 KARYEYYQELA-TELGYQLDGL-TVLGFRGISPDGKRHPSGNNSSPYDDTFVILNPSTG---TVTTLLGSTHAGQPTSTLSPGGVAQIKPGSYRAVPAGEYAQMDCWLVTRPSGEEQVPCWRDANGNGFVDSQEK----RSGLTATEILFHNGRYPDYGSSIGCQVLPPELMERFIREVGSENSFDFILIDAN 277          
BLAST of mRNA_P-wetherbeei_contig20370.1.1 vs. uniprot
Match: A0A7Z9U8F4_9BACT (Peptidoglycan-binding protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9U8F4_9BACT)

HSP 1 Score: 167 bits (423), Expect = 2.750e-46
Identity = 97/205 (47.32%), Postives = 132/205 (64.39%), Query Frame = 1
Query:   19 KYDYYKGLVEANQGKIEDGVDTVLGLRGLGKDGTRHDSAQNIGPYNDTFVLLSKDGAGQPSVTELTGSTHAGQKSSTVS--PD-------GVAQLRPGSFQAT-PHGEHDGM--PSWHITTQSGDDHVPAWRDVNKDGYISGQEKAQAEKAGTTATAILFHNGKFADHGSSIGCQVMPPEVMQSFISLVGVDKSFNYTLVDANVA 597
            +Y++Y+ L+EAN G+I     TVLGLRGLG DG RHD   N+G Y+DTFV+L++   G+PSV    G+THA Q+SS  S  PD       GVA L+PG++      G + G    ++H+ TQ G+ +VPA+RD N DG IS  E++ AE+ G  A++ILFH+GK+ +  SSIGCQ + P   Q+F   VG    FNYTL+DAN A
Sbjct:  240 QYEHYRRLIEANGGEINGDGATVLGLRGLGVDGQRHDGMSNVGGYDDTFVVLNRGPNGEPSVQTFQGATHANQRSSGASYGPDQNGRTVRGVAMLQPGNYDVDFAGGNYQGRWGAAYHVKTQDGNGYVPAYRDTNADGRISAAERSAAEQNGYQASSILFHSGKY-NAPSSIGCQTLLPGQHQAFSEAVG-RSGFNYTLLDANNA 442          
BLAST of mRNA_P-wetherbeei_contig20370.1.1 vs. uniprot
Match: A0A3D1RBP0_9DELT (PG_binding_1 domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3D1RBP0_9DELT)

HSP 1 Score: 139 bits (350), Expect = 9.600e-37
Identity = 80/199 (40.20%), Postives = 114/199 (57.29%), Query Frame = 1
Query:   19 KYDYYKGLVEANQGKIE-DGVDTVLGLRGLGKDGTRHDSAQNIGPYNDTFVLLSKDGAGQPSVTELTGSTHAGQKSSTVSPD-------GVAQLRPGSFQATPHGEHDGMPSWHITTQSGDDHVPAWRDVNKDGYISGQEKAQAEKAGTTATAILFHNGKFADHGSSIGCQVMPPEVMQSFISLVG-VDKSFNYTLVDA 588
            K+ +Y  +V AN G++  DG  TVLG+RG+  DGTRH++  N   Y+D FV+L+  G       E  G+THAGQ SS+ +PD        +  +  G++   P+G + G PS+H+ T  G   +  WRD N+DG  SG E+  +E+ G   TA+LFH G  A    SIGCQ + P     F+S +G  + SF+YTLV A
Sbjct:  119 KFAHYARIVRANGGQVNPDGKPTVLGIRGMRLDGTRHETT-NSRAYDDVFVVLTPSGR----CYEFRGATHAGQTSSSAAPDVTRDGRGDIGLIGAGNYMVKPNGMYRGSPSFHVQTLGGSGSLAGWRDTNQDGVYSGAERRASEQRGDRITAVLFHPGN-ASSPRSIGCQTLAPSDYSRFVSAIGGTNGSFSYTLVQA 311          
BLAST of mRNA_P-wetherbeei_contig20370.1.1 vs. uniprot
Match: UPI0018930E05 (hypothetical protein n=1 Tax=Nocardia higoensis TaxID=228599 RepID=UPI0018930E05)

HSP 1 Score: 65.9 bits (159), Expect = 3.970e-9
Identity = 57/202 (28.22%), Postives = 89/202 (44.06%), Query Frame = 1
Query:   10 VQAKYDYYKGLVEANQGKIEDGVDTVLGLRGLGKDGTRHDSAQNIGPYNDTFVLLSKDGAGQPSVTELTGSTHAGQK-------SSTVSPDGVAQLR--PGSFQATPHG----EHDGMPSWHITTQSGDDHVPAWRDVNKDGYISGQEKAQAEKAGTTATAILFHNGKFADHGSSIGCQVMPPEVMQSFISLVGVDKSFNYT 576
            + AKYDYYK L+E N G ++ G+D    +    +  T  ++ Q I  Y+D  VL+  D  G   V+E   +T    +       +  V+ DG  +L   P       H     +HD +   ++ T   D  V A  D N DG  +          G    ++ +H G+  D  S+ GCQ MPP+    F++ +GV  +  YT
Sbjct:  214 IDAKYDYYKSLIERNGGIVDTGIDQKNMVAIRRETNTFANNGQGI--YDDKAVLIWVDDHGIKHVSEYKANTDPTARYIDNPNETRDVNGDGTKELGRLPAGTYEYGHNWFKNKHDTVGDGNVFTMPEDARVAAEYDTNHDGLFNDNA------FGEGGESMFWHCGREGDVASA-GCQTMPPDDWSRFVTDMGVSLTDKYT 406          
BLAST of mRNA_P-wetherbeei_contig20370.1.1 vs. uniprot
Match: UPI001CD9C026 (hypothetical protein n=1 Tax=Nocardia sp. NEAU-G4 TaxID=2878563 RepID=UPI001CD9C026)

HSP 1 Score: 59.7 bits (143), Expect = 5.160e-7
Identity = 63/224 (28.12%), Postives = 97/224 (43.30%), Query Frame = 1
Query:   10 VQAKYDYYKGLVEANQGKIEDGVD--TVLGLRGLGKDGTRHDSAQNIGPYNDTFVLLSKDGAGQPSVTELTGSTHAGQK------SSTVSPDG---VAQLRPGSFQATPH---GEHDGMPSWHITTQSGDDHVPAWRDVNKDGYISGQEKAQAEKAGTTATAILFHNGKFADHG-----SSIGCQVMPPEVMQSFISLVGVDKS---------FNYTLVDANVA 597
            V AKYDYYK L+E N G  ++GVD   +L +R   K+     +  N G Y+D  VLL  D  G   V+E   +T    +      +  V+ DG   + +L  GS++   +    +HD +   ++          A  D + DG  +   +A   +       + +H G+    G     +S GCQ MPP+    F S +GV  +           YTLV+ N A
Sbjct:  228 VDAKYDYYKALIERNGGTFDEGVDQKNLLAIR---KETNTAANGGN-GVYDDKAVLLWVDERGVKHVSEYKANTDPTNRYIDTDEAVDVNGDGKKELGRLPAGSYEYGHNWFKNKHDSVGDGNVFKMPEGSKAEAEYDTDHDGLFNENVRAGGGET------MYWHCGREEGAGEKEGVASAGCQTMPPDDWSRFTSDMGVSVNDKFTGEQTPLRYTLVNENSA 441          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20370.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7Z9PWQ9_9BACT7.160e-6051.81Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A7Z9U8F4_9BACT2.750e-4647.32Peptidoglycan-binding protein n=1 Tax=Phycisphaera... [more]
A0A3D1RBP0_9DELT9.600e-3740.20PG_binding_1 domain-containing protein n=1 Tax=Myx... [more]
UPI0018930E053.970e-928.22hypothetical protein n=1 Tax=Nocardia higoensis Ta... [more]
UPI001CD9C0265.160e-728.13hypothetical protein n=1 Tax=Nocardia sp. NEAU-G4 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20370contigP-wetherbeei_contig20370:408..1022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1090319.KE386571_gene341
PFAMsLysM
Model size615
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000747
EggNOG OGsCOG1388@1|root,COG4842@1|root,COG1388@2|Bacteria,COG4842@2|Bacteria,1PEC9@1224|Proteobacteria,2URJJ@28211|Alphaproteobacteria,2K7Z3@204457|Sphingomonadales
DescriptionLysin motif
Cds size615
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.8820667-CDS-P-wetherbeei_contig20370:407..10221683186197.8820667-CDS-P-wetherbeei_contig20370:407..1022Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20370 408..1022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20370.1.1prot_P-wetherbeei_contig20370.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20370 408..1022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20370.1.1

>prot_P-wetherbeei_contig20370.1.1 ID=prot_P-wetherbeei_contig20370.1.1|Name=mRNA_P-wetherbeei_contig20370.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=205bp
NGDVQAKYDYYKGLVEANQGKIEDGVDTVLGLRGLGKDGTRHDSAQNIGP
YNDTFVLLSKDGAGQPSVTELTGSTHAGQKSSTVSPDGVAQLRPGSFQAT
PHGEHDGMPSWHITTQSGDDHVPAWRDVNKDGYISGQEKAQAEKAGTTAT
AILFHNGKFADHGSSIGCQVMPPEVMQSFISLVGVDKSFNYTLVDANVAT
PRCG*
back to top

mRNA from alignment at P-wetherbeei_contig20370:408..1022+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20370.1.1 ID=mRNA_P-wetherbeei_contig20370.1.1|Name=mRNA_P-wetherbeei_contig20370.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=615bp|location=Sequence derived from alignment at P-wetherbeei_contig20370:408..1022+ (Phaeothamnion wetherbeei SAG_119_79)
AACGGGGACGTTCAGGCCAAATACGATTACTACAAAGGCCTGGTAGAAGC CAATCAGGGCAAGATCGAGGACGGCGTGGACACTGTGCTGGGCCTGCGCG GCCTTGGCAAAGACGGAACGCGCCACGATTCGGCGCAAAATATCGGGCCC TACAACGATACCTTCGTTCTGCTTAGCAAAGACGGCGCAGGGCAGCCCAG TGTGACCGAACTGACGGGCTCCACCCATGCTGGCCAAAAGAGTTCTACGG TGTCGCCCGATGGCGTTGCGCAATTGCGCCCCGGGAGTTTTCAGGCAACG CCTCACGGCGAGCACGATGGGATGCCTTCCTGGCATATCACGACCCAGAG CGGCGACGACCACGTCCCCGCGTGGCGCGATGTCAATAAGGATGGATACA TCTCCGGCCAGGAGAAGGCACAGGCCGAGAAGGCCGGCACGACAGCTACG GCCATTCTGTTCCACAACGGCAAGTTCGCCGACCACGGAAGCTCGATCGG ATGCCAGGTGATGCCGCCCGAAGTTATGCAGTCCTTCATCTCCCTCGTGG GCGTCGACAAGTCCTTCAACTATACGCTGGTTGACGCCAACGTAGCCACT CCCCGCTGCGGCTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20370:408..1022+

>mRNA_P-wetherbeei_contig20370.1.1 ID=mRNA_P-wetherbeei_contig20370.1.1|Name=mRNA_P-wetherbeei_contig20370.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=615bp|location=Sequence derived from alignment at P-wetherbeei_contig20370:408..1022+ (Phaeothamnion wetherbeei SAG_119_79)
AACGGGGACGTTCAGGCCAAATACGATTACTACAAAGGCCTGGTAGAAGC
CAATCAGGGCAAGATCGAGGACGGCGTGGACACTGTGCTGGGCCTGCGCG
GCCTTGGCAAAGACGGAACGCGCCACGATTCGGCGCAAAATATCGGGCCC
TACAACGATACCTTCGTTCTGCTTAGCAAAGACGGCGCAGGGCAGCCCAG
TGTGACCGAACTGACGGGCTCCACCCATGCTGGCCAAAAGAGTTCTACGG
TGTCGCCCGATGGCGTTGCGCAATTGCGCCCCGGGAGTTTTCAGGCAACG
CCTCACGGCGAGCACGATGGGATGCCTTCCTGGCATATCACGACCCAGAG
CGGCGACGACCACGTCCCCGCGTGGCGCGATGTCAATAAGGATGGATACA
TCTCCGGCCAGGAGAAGGCACAGGCCGAGAAGGCCGGCACGACAGCTACG
GCCATTCTGTTCCACAACGGCAAGTTCGCCGACCACGGAAGCTCGATCGG
ATGCCAGGTGATGCCGCCCGAAGTTATGCAGTCCTTCATCTCCCTCGTGG
GCGTCGACAAGTCCTTCAACTATACGCTGGTTGACGCCAACGTAGCCACT
CCCCGCTGCGGCTAG
back to top