mRNA_P-wetherbeei_contig2036.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2036.1.1
Unique NamemRNA_P-wetherbeei_contig2036.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2036.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2036contigP-wetherbeei_contig2036:2..861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQT1
PFAMsDNA_repr_REX1B
Model size860
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons1
Evalue0.000296
EggNOG OGs2CJQ7@1|root,2S3U4@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_002170.1
DescriptionDNA repair REX1-B
Cds size540
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.3962514-UTR-P-wetherbeei_contig2036:1..2011683186197.3962514-UTR-P-wetherbeei_contig2036:1..201Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2036 2..201 +
1683186197.4130828-UTR-P-wetherbeei_contig2036:741..8611683186197.4130828-UTR-P-wetherbeei_contig2036:741..861Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2036 742..861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.4052393-CDS-P-wetherbeei_contig2036:201..7411683186197.4052393-CDS-P-wetherbeei_contig2036:201..741Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2036 202..741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2036.1.1prot_P-wetherbeei_contig2036.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2036 202..741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2036.1.1

>prot_P-wetherbeei_contig2036.1.1 ID=prot_P-wetherbeei_contig2036.1.1|Name=mRNA_P-wetherbeei_contig2036.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
MLAVMLRTAGGCAGYPVLVAEMTARFAALSRGITLGVAALATRGEAELAR
LIRDVQSREQEKLLLVASLHLETIRRSQLRPGAPNCGAIAGAAVEASHLA
AGDAEMAAALRGGGGLSSSSSGGGNAGGGAAGEATGVVALLKEESMALER
KVQAVIADINELLDDIKCEAMEAAGAEEG*
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mRNA from alignment at P-wetherbeei_contig2036:2..861+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2036.1.1 ID=mRNA_P-wetherbeei_contig2036.1.1|Name=mRNA_P-wetherbeei_contig2036.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=860bp|location=Sequence derived from alignment at P-wetherbeei_contig2036:2..861+ (Phaeothamnion wetherbeei SAG_119_79)
GCGACGCGGAAGCACCCTGCCACGGCTGGGACGCGGCCTCGGCTGCTGCA
TCTTCCTCCTTTTCTTGCAGCACGGAGGATCCCGCAGCCGGCGGTGCCAA
GGCCGTCGCGGATCTCAGCGAGCTGAGCACCGGCGACCTCATCCGCGCGT
TCCAGCTCGCCCAGGAGGAGCGAGTCATCGCGTACCGGGAGTTCAACGAC
ATGCTCGCGGTTATGCTGCGCACCGCGGGCGGCTGTGCTGGCTACCCGGT
GCTCGTCGCGGAGATGACGGCGCGCTTCGCTGCCCTGAGCCGCGGCATCA
CGCTTGGCGTCGCCGCGCTGGCAACACGCGGCGAGGCCGAGCTCGCGCGG
CTCATCCGGGACGTCCAGAGCCGCGAGCAGGAGAAGCTTTTACTGGTGGC
CTCTCTGCACCTGGAGACGATCCGGCGCTCCCAGCTGCGGCCGGGTGCGC
CAAACTGCGGTGCGATCGCTGGCGCCGCAGTCGAAGCGAGCCACCTCGCG
GCGGGCGATGCTGAAATGGCCGCTGCCTTGCGAGGCGGCGGCGGGCTCTC
CTCATCCTCCTCAGGCGGCGGGAACGCTGGCGGTGGGGCGGCCGGGGAGG
CCACTGGTGTCGTGGCGCTGCTGAAGGAAGAGTCGATGGCGCTGGAGCGA
AAGGTGCAGGCGGTGATTGCCGACATCAATGAGCTGCTCGATGACATCAA
GTGCGAGGCCATGGAGGCGGCGGGAGCGGAGGAGGGGTGATGAAAGACGC
GAAGATGTCAAAACAGACTTCAAAAGGCCCGCAAGATAGACGGGCCCAAG
TAAGCACATCACGGCAATGACTTCACAGACATTCTTTACTGGTTATTGTT
TCCGTCGTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2036:2..861+

>mRNA_P-wetherbeei_contig2036.1.1 ID=mRNA_P-wetherbeei_contig2036.1.1|Name=mRNA_P-wetherbeei_contig2036.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig2036:2..861+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGCGGTTATGCTGCGCACCGCGGGCGGCTGTGCTGGCTACCCGGT
GCTCGTCGCGGAGATGACGGCGCGCTTCGCTGCCCTGAGCCGCGGCATCA
CGCTTGGCGTCGCCGCGCTGGCAACACGCGGCGAGGCCGAGCTCGCGCGG
CTCATCCGGGACGTCCAGAGCCGCGAGCAGGAGAAGCTTTTACTGGTGGC
CTCTCTGCACCTGGAGACGATCCGGCGCTCCCAGCTGCGGCCGGGTGCGC
CAAACTGCGGTGCGATCGCTGGCGCCGCAGTCGAAGCGAGCCACCTCGCG
GCGGGCGATGCTGAAATGGCCGCTGCCTTGCGAGGCGGCGGCGGGCTCTC
CTCATCCTCCTCAGGCGGCGGGAACGCTGGCGGTGGGGCGGCCGGGGAGG
CCACTGGTGTCGTGGCGCTGCTGAAGGAAGAGTCGATGGCGCTGGAGCGA
AAGGTGCAGGCGGTGATTGCCGACATCAATGAGCTGCTCGATGACATCAA
GTGCGAGGCCATGGAGGCGGCGGGAGCGGAGGAGGGGTGA
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