mRNA_P-wetherbeei_contig2035.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2035.4.1
Unique NamemRNA_P-wetherbeei_contig2035.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig2035.4.1 vs. uniprot
Match: A0A836CLY1_9STRA (Proton gradient regulation n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLY1_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.640e-34
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 2 
Query:  206 RDMQMGKVSKFGIFSPAVVVAKVVLGEARLNKIRGKAIALHSQAITEYCNWVGASSSMRGQLIKKAKNNGDTLGFLW 436
            R + MGKVSKFG+FSPAV+ AKVVLGEARLNKIRGKAIALHSQ IT +C+WVGA S MRG LIKKAK  GD LGFLW
Sbjct:   53 RTLHMGKVSKFGLFSPAVIAAKVVLGEARLNKIRGKAIALHSQTITSFCDWVGADSKMRGLLIKKAKTTGDELGFLW 129
[Close]
BLAST of mRNA_P-wetherbeei_contig2035.4.1 vs. uniprot
Match: D7G229_ECTSI (Proton gradient regulation n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G229_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 5.150e-34
Identity = 72/134 (53.73%), Postives = 85/134 (63.43%), Query Frame = 2 
Query:   38 CSAARQRLVGADAASSKVLH*ELQTSLMHCRVPFPHSVPSSNSNFLHLSFVQRRRSR-DMQMGKVSKFGIFSPAVVVAKVVLGEARLNKIRGKAIALHSQAITEYCNWVGASSSMRGQLIKKAKNNGDTLGFLW 436
            C AA Q  V A A +       L+     C +P   S+  +           RR SR +++MGKVSKFGIFSPAVV AKV+LGE+RLNKIRGK IALHSQ I EYC WVGA   +RG LI+KAK NGD LGFL+
Sbjct:   11 CVAASQAFVVAPARAGLSTMPSLREGSFVCSLPSTASLTVAQGGGNVAVSRPRRTSRGELRMGKVSKFGIFSPAVVAAKVILGESRLNKIRGKGIALHSQVIQEYCRWVGAPPKVRGMLIRKAKGNGDDLGFLF 144
[Close]
BLAST of mRNA_P-wetherbeei_contig2035.4.1 vs. uniprot
Match: W7TSN1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSN1_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.890e-30
Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = 2 
Query:  140 PHSVPSSNSNFLHLSFVQRRRSRDMQMGKVSKFGIFSPAVVVAKVVLGEARLNKIRGKAIALHSQAITEYCNWVGASSSMRGQLIKKAKNNGDTLGFLW 436
            P   P+S      L   +++ +  M  GKV+KFG FSPAV+VAK+VLGE +LNK+RGKAI+LHSQAITE+C +VGA    R +LIKKAK NGD LGFLW
Sbjct:   31 PLRPPASTPAPYGLPRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFLW 129
[Close]
BLAST of mRNA_P-wetherbeei_contig2035.4.1 vs. uniprot
Match: A0A7S0B1V4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B1V4_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.880e-28
Identity = 57/95 (60.00%), Postives = 71/95 (74.74%), Query Frame = 2 
Query:  149 VPSSNSNFLHLSFVQRRRSRDMQMGKVSKFGIFSPAVVVAKVVLGEARLNKIRGKAIALHSQAITEYCNWVGASSSMRGQLIKKAKNNGDTLGFL 433
            V S + +   ++  Q  R  DM+MGK++KFGIFSPAV  +K+VLGEARLNKIRGKAI+LHSQ I ++C W GA   +R +LIKKAK NGD LGFL
Sbjct:   40 VVSQHRSAAPITAAQNMRKGDMRMGKMAKFGIFSPAVYASKIVLGEARLNKIRGKAISLHSQYIGDFCTWAGAYH-LRTRLIKKAKTNGDILGFL 133
[Close]
BLAST of mRNA_P-wetherbeei_contig2035.4.1 vs. uniprot
Match: A0A7S2RGK8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGK8_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.580e-27
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 2 
Query:  212 MQMGKVSKFGIFSPAVVVAKVVLGEARLNKIRGKAIALHSQAITEYCNWVGASSSMRGQLIKKAKNNGDTLGFL 433
            + MGKVSKFGIFSPAV  AK VLGE  LNKIRG+ I LHSQAITE+C +VGAS  MRG LIKKAK  GD LGFL
Sbjct:   47 IHMGKVSKFGIFSPAVYAAKTVLGEKNLNKIRGQGITLHSQAITEFCVYVGASPKMRGMLIKKAKTTGDELGFL 120
[Close]
BLAST of mRNA_P-wetherbeei_contig2035.4.1 vs. uniprot
Match: A0A7S2XY75_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY75_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.080e-27
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 2 
Query:  188 VQRRRSRDMQMGKVSKFGIFSPAVVVAKVVLGEARLNKIRGKAIALHSQAITEYCNWVGASSSMRGQLIKKAKNNGDTLGFL 433
            V   R +   M KV+KFG+FSPAV  AKVVLG+  LNK+RGK IALHSQAITE+C ++G S+ +R ++IK AK NGDTLGFL
Sbjct:   43 VTATRGQYSMMAKVAKFGVFSPAVFAAKVVLGDKELNKVRGKGIALHSQAITEFCQYIGTSTQLRSRIIKLAKTNGDTLGFL 124
[Close]
BLAST of mRNA_P-wetherbeei_contig2035.4.1 vs. uniprot
Match: A0A6U0UVH1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UVH1_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.640e-26
Identity = 56/101 (55.45%), Postives = 66/101 (65.35%), Query Frame = 2 
Query:  131 VPFPHSVPSSNSNFLHLSFVQRRRSRDMQMGKVSKFGIFSPAVVVAKVVLGEARLNKIRGKAIALHSQAITEYCNWVGASSSMRGQLIKKAKNNGDTLGFL 433
            V  P ++P+  +       +  R S     GKV+KFG FSPAV  AK+VLGE RLNKIRGK IALHSQAIT +CNW G    MR ++IK AK NGD LGFL
Sbjct:   21 VAAPRALPTHRT----APIIASRGSNLHMGGKVAKFGPFSPAVYAAKIVLGEQRLNKIRGKGIALHSQAITYFCNWAGTQGKMRNRVIKLAKTNGDRLGFL 117
[Close]
BLAST of mRNA_P-wetherbeei_contig2035.4.1 vs. uniprot
Match: A0A7S2CST4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CST4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.670e-26
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 2 
Query:  188 VQRRRSRDMQMGKVSKFGIFSPAVVVAKVVLGEARLNKIRGKAIALHSQAITEYCNWVGASSSMRGQLIKKAKNNGDTLGFL 433
            V  +RS  +QMG  +KFGIFSPAVV A+ VLG+  LNK+RGK I+LHSQAITE+  +VGASS  RG LIKKAKNNGD LGFL
Sbjct:   42 VPNQRSA-LQMGNNAKFGIFSPAVVAARAVLGDKTLNKLRGKGISLHSQAITEWTVYVGASSYQRGMLIKKAKNNGDELGFL 122
[Close]
BLAST of mRNA_P-wetherbeei_contig2035.4.1 vs. uniprot
Match: B8C035_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C035_THAPS)

HSP 1 Score: 103 bits (258), Expect = 3.560e-25
Identity = 54/82 (65.85%), Postives = 61/82 (74.39%), Query Frame = 2 
Query:  188 VQRRRSRDMQMGKVSKFGIFSPAVVVAKVVLGEARLNKIRGKAIALHSQAITEYCNWVGASSSMRGQLIKKAKNNGDTLGFL 433
            V R     +QMG  +KFGIFSPAV VAK+ LG  RLNKIRGKAI+LHSQ I E+C W GA   +R +LIKKAK NGDTLGFL
Sbjct:   48 VARTSKTSLQMGSQAKFGIFSPAVYVAKIGLGNDRLNKIRGKAISLHSQYIGEFCEWAGAYH-LRTRLIKKAKTNGDTLGFL 128
[Close]
BLAST of mRNA_P-wetherbeei_contig2035.4.1 vs. uniprot
Match: A0A7S2UDQ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDQ7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.790e-25
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 2 
Query:  179 LSFVQRRRSR--DMQMGKVSKFGIFSPAVVVAKVVLGEARLNKIRGKAIALHSQAITEYCNWVGASSSMRGQLIKKAKNNGDTLGFL 433
            ++F  RR +   ++QMG ++KFG+FSPAV  AKV LG+ +LNKIRGKAI+LHSQAI E+C+W GA   +R +LIKKAK NGD LGFL
Sbjct:   48 VTFAPRRSTAAANLQMGSMAKFGVFSPAVYGAKVALGQEKLNKIRGKAISLHSQAIGEFCSWAGAYH-LRTKLIKKAKTNGDILGFL 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2035.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLY1_9STRA1.640e-3479.22Proton gradient regulation n=1 Tax=Tribonema minus... [more]
D7G229_ECTSI5.150e-3453.73Proton gradient regulation n=2 Tax=Ectocarpus TaxI... [more]
W7TSN1_9STRA3.890e-3058.59Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S0B1V4_9STRA2.880e-2860.00Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2RGK8_9STRA1.580e-2774.32Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2XY75_9STRA7.080e-2762.20Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U0UVH1_9STRA1.640e-2655.45Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2CST4_9STRA2.670e-2668.29Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
B8C035_THAPS3.560e-2565.85Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2UDQ7_9STRA5.790e-2560.92Hypothetical protein n=1 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2035contigP-wetherbeei_contig2035:4597..5184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G229
Preferred namePGR5
Model size588
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006950,GO:0008150,GO:0008152,GO:0009055,GO:0009314,GO:0009414,GO:0009415,GO:0009416,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0009644,GO:0009767,GO:0009773,GO:0009987,GO:0010035,GO:0010117,GO:0015979,GO:0016020,GO:0016491,GO:0019684,GO:0022900,GO:0031976,GO:0031984,GO:0034357,GO:0042221,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055035,GO:0055114,GO:0071214,GO:0071478,GO:0071482,GO:0071484,GO:0104004,GO:1901700
Exons1
Evalue1.18e-34
EggNOG OGs2E0ET@1|root,2S7VD@2759|Eukaryota
Ec32 ortholog descriptionproton gradient regulation
Ec32 orthologEc-11_003610.1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.2166536-UTR-P-wetherbeei_contig2035:4596..47141683186197.2166536-UTR-P-wetherbeei_contig2035:4596..4714Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2035 4597..4714 +
1683186197.2380726-UTR-P-wetherbeei_contig2035:5035..51841683186197.2380726-UTR-P-wetherbeei_contig2035:5035..5184Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2035 5036..5184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.2282302-CDS-P-wetherbeei_contig2035:4714..50351683186197.2282302-CDS-P-wetherbeei_contig2035:4714..5035Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2035 4715..5035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2035.4.1prot_P-wetherbeei_contig2035.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2035 4715..5035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2035.4.1

>prot_P-wetherbeei_contig2035.4.1 ID=prot_P-wetherbeei_contig2035.4.1|Name=mRNA_P-wetherbeei_contig2035.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
MHCRVPFPHSVPSSNSNFLHLSFVQRRRSRDMQMGKVSKFGIFSPAVVVA
KVVLGEARLNKIRGKAIALHSQAITEYCNWVGASSSMRGQLIKKAKNNGD
TLGFLW*
back to top

mRNA from alignment at P-wetherbeei_contig2035:4597..5184+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2035.4.1 ID=mRNA_P-wetherbeei_contig2035.4.1|Name=mRNA_P-wetherbeei_contig2035.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=588bp|location=Sequence derived from alignment at P-wetherbeei_contig2035:4597..5184+ (Phaeothamnion wetherbeei SAG_119_79)
CATTCGTTGCGAGTCCTGCTCTCCGCGCGAACGGCTTTGTAGCGCAGCAC
GCCAGCGTCTCGTCGGTGCCGATGCAGCGTCTTCCAAGGTACTTCACTGA
GAGCTGCAAACGTCCCTCATGCACTGCCGTGTTCCCTTCCCACACTCCGT
CCCCTCCTCTAATTCCAACTTCCTTCATCTCTCTTTTGTGCAACGGCGCA
GATCAAGGGACATGCAAATGGGCAAGGTGTCAAAATTCGGCATCTTCTCA
CCCGCCGTTGTGGTGGCCAAGGTCGTGCTGGGGGAGGCGCGCTTGAACAA
AATTCGCGGCAAGGCGATTGCGCTCCACTCCCAGGCCATCACGGAGTACT
GCAACTGGGTAGGCGCGTCTAGCTCGATGCGCGGCCAGCTCATCAAGAAG
GCGAAGAACAACGGAGACACTCTCGGCTTCTTGTGGTAACAACGGAACGT
TGATGTAGTTCTTCGAGGGGGAAACAACATCAGCCGCTTCTGGCTGGTCG
GCAGATGCTGTGCGCGGGAACCGCCCGCTGAAAACCCCCTGTTACTTTGT
ACATGAAACATGGTGATTAATGGAAGCGCTTTTAGATG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig2035:4597..5184+

>mRNA_P-wetherbeei_contig2035.4.1 ID=mRNA_P-wetherbeei_contig2035.4.1|Name=mRNA_P-wetherbeei_contig2035.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig2035:4597..5184+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACTGCCGTGTTCCCTTCCCACACTCCGTCCCCTCCTCTAATTCCAA
CTTCCTTCATCTCTCTTTTGTGCAACGGCGCAGATCAAGGGACATGCAAA
TGGGCAAGGTGTCAAAATTCGGCATCTTCTCACCCGCCGTTGTGGTGGCC
AAGGTCGTGCTGGGGGAGGCGCGCTTGAACAAAATTCGCGGCAAGGCGAT
TGCGCTCCACTCCCAGGCCATCACGGAGTACTGCAACTGGGTAGGCGCGT
CTAGCTCGATGCGCGGCCAGCTCATCAAGAAGGCGAAGAACAACGGAGAC
ACTCTCGGCTTCTTGTGGTAA
back to top