mRNA_P-wetherbeei_contig20347.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20347.1.1
Unique NamemRNA_P-wetherbeei_contig20347.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20347.1.1 vs. uniprot
Match: A0A7X9AFN3_9BURK (Tetratricopeptide repeat protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AFN3_9BURK)

HSP 1 Score: 94.4 bits (233), Expect = 1.370e-17
Identity = 48/104 (46.15%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:   19 ASAYTQIGLTFFRERRLREAQQYYLSSLDLSDREAPPTQLMADTYRYLGILSNVSGENTEALRYHDRALEIYSKLRLLLGQAKTYSSVGQTCLDLSRLDEALYF 330
            ASA TQ+GL  FRER+   A++ Y  SL++ +R  P ++L A+T+R +G+L +V G   +ALR+  +AL++Y   R+ LG+A+ Y+S+GQTCL++ RLD+AL F
Sbjct:  181 ASALTQLGLAAFRERQSELARERYQQSLEILERWGPESELEAETWRLMGVLWSVRGRFRKALRHLRKALQMYLLNRMPLGRARVYNSLGQTCLEMGRLDDALLF 284
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BLAST of mRNA_P-wetherbeei_contig20347.1.1 vs. uniprot
Match: A0A7X8XPN0_9BURK (Tetratricopeptide repeat protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XPN0_9BURK)

HSP 1 Score: 80.9 bits (198), Expect = 4.400e-13
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:   40 GLTFFRERRLREAQQYYLSSLDLSDREAPPTQLMADTYRYLGILSNVSGENTEALRYHDRALEIYSKLRLLLGQAKTYSSVGQTCLDLSRLDEALY 327
            GL  FR+  L EA+ +  ++L L+ +  P T   AD +R+L I+S+V G   EALR + RALEIY +   LLGQ K Y S+GQ+ L+LSR+DEAL+
Sbjct:  189 GLAAFRQGFLEEARSFTENALALARQHLPRTCQEADAHRFLAIVSSVQGFYVEALRGYLRALEIYREQGSLLGQTKVYGSIGQSLLELSRVDEALF 284
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BLAST of mRNA_P-wetherbeei_contig20347.1.1 vs. uniprot
Match: A0A7Z9PR08_9BACT (Tetratricopeptide repeat protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PR08_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 1.490e-8
Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:   40 GLTFFRERRLREAQQYYLSSLDLSDREAPPTQLMADTYRYLGILSNVSGENTEALRYHDRALEIYSKLRLLLGQAKTYSSVGQTCLDLSRLDEALYF 330
            GL   R  RL +A+  +  SL    +    +    +  R+LGIL+ + G   E L++  +ALE +  L   +G AKTY+S+GQTCL L R  EALYF
Sbjct:  168 GLVGVRSERLEDAEDLFKLSLACLGKNDMGSIQRGEGLRFLGILACLDGRPVEGLKFQKQALECHQALPYRMGVAKTYNSLGQTCLKLGRYQEALYF 264
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20347.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7X9AFN3_9BURK1.370e-1746.15Tetratricopeptide repeat protein n=1 Tax=Burkholde... [more]
A0A7X8XPN0_9BURK4.400e-1347.92Tetratricopeptide repeat protein n=1 Tax=Burkholde... [more]
A0A7Z9PR08_9BACT1.490e-839.18Tetratricopeptide repeat protein n=1 Tax=Phycispha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20347contigP-wetherbeei_contig20347:184..1227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog313606.M23134_06380
Preferred namesrrB
PFAMs7TMR-DISMED2,7TMR-DISM_7TM,CBS,HAMP,SpoIIE,TPR_12,TPR_8,Y_Y_Y,dCache_1
Model size1044
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000158
EggNOG OGsCOG0457@1|root,COG2208@1|root,COG0457@2|Bacteria,COG2208@2|Bacteria,4PI8Y@976|Bacteroidetes,47TST@768503|Cytophagia
DescriptionSigma factor PP2C-like phosphatases
Cds size1044
COG categoryKT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.0407555-CDS-P-wetherbeei_contig20347:183..12271683186197.0407555-CDS-P-wetherbeei_contig20347:183..1227Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20347 184..1227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20347.1.1prot_P-wetherbeei_contig20347.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20347 184..1227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20347.1.1

>prot_P-wetherbeei_contig20347.1.1 ID=prot_P-wetherbeei_contig20347.1.1|Name=mRNA_P-wetherbeei_contig20347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=348bp
EERGVLASAYTQIGLTFFRERRLREAQQYYLSSLDLSDREAPPTQLMADT
YRYLGILSNVSGENTEALRYHDRALEIYSKLRLLLGQAKTYSSVGQTCLD
LSRLDEALYFTHKAERISRRLGAEAEVAAIYGKLGNIYVQMGDYNRAVEF
HLKDVEMCRRFGNYRAIAYAMHNLGLSYRGKGEISEAIHYLQESLSRFQE
LADNLQVTRLLLDLARTCLDRSRLADAEEYLVTADSQIARDPHNPHLGYL
QLLLGSLYRLQQNPEEARDLLEQAIDVLSVNTASTHLAQANFELGLLMAE
AGNKEVALEHLKTALRLSRTLEMRNVMLDCIAQIERLDELELVKVLLE
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mRNA from alignment at P-wetherbeei_contig20347:184..1227-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20347.1.1 ID=mRNA_P-wetherbeei_contig20347.1.1|Name=mRNA_P-wetherbeei_contig20347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1044bp|location=Sequence derived from alignment at P-wetherbeei_contig20347:184..1227- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGCGAGGCGTACTCGCTTCGGCCTACACGCAAATCGGTCTCACTTT
TTTCCGTGAACGCCGCCTGCGCGAAGCTCAGCAGTATTACCTCAGTAGCC
TCGATCTTAGCGACCGCGAAGCTCCTCCCACTCAGTTGATGGCCGATACC
TACCGCTACCTGGGAATCTTGAGCAACGTATCGGGCGAGAATACCGAAGC
GCTGCGCTACCATGACCGGGCTTTGGAGATTTACTCCAAGCTACGTCTGC
TACTCGGGCAGGCCAAAACCTACAGCTCGGTTGGCCAGACCTGCCTTGAT
CTCTCGCGCCTGGACGAGGCGCTCTACTTCACCCATAAAGCCGAACGGAT
TTCTCGGCGCCTGGGCGCGGAAGCCGAAGTCGCCGCTATCTACGGCAAAC
TTGGCAACATTTACGTGCAGATGGGCGACTACAATCGGGCCGTCGAGTTC
CACCTCAAGGACGTGGAAATGTGCCGGCGCTTTGGGAATTATCGCGCGAT
CGCTTATGCAATGCACAATCTGGGCCTGAGCTATCGTGGTAAGGGCGAGA
TCAGCGAAGCCATCCACTATCTCCAGGAGAGCCTCAGTCGTTTTCAGGAG
TTAGCCGATAATCTACAGGTGACCCGGCTGCTGCTAGATCTGGCCCGCAC
CTGCCTGGACCGCAGCCGCCTGGCCGACGCCGAGGAATATCTCGTCACCG
CCGACAGCCAGATCGCCCGAGACCCTCATAATCCGCATCTGGGCTATCTG
CAGCTACTCCTGGGCAGCCTTTATCGCCTCCAGCAGAACCCTGAGGAAGC
CCGAGATCTCCTCGAGCAAGCCATCGACGTTCTCTCGGTCAATACCGCTT
CCACTCATCTGGCCCAGGCCAACTTCGAGCTGGGTCTGCTGATGGCCGAA
GCTGGCAATAAGGAAGTCGCTCTGGAACATCTCAAAACGGCACTGCGTCT
TTCCCGCACGCTGGAAATGCGCAACGTGATGCTCGATTGTATCGCCCAGA
TCGAGCGCCTGGACGAGCTGGAGCTGGTCAAGGTTCTTCTTGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20347:184..1227-

>mRNA_P-wetherbeei_contig20347.1.1 ID=mRNA_P-wetherbeei_contig20347.1.1|Name=mRNA_P-wetherbeei_contig20347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1044bp|location=Sequence derived from alignment at P-wetherbeei_contig20347:184..1227- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGCGAGGCGTACTCGCTTCGGCCTACACGCAAATCGGTCTCACTTT
TTTCCGTGAACGCCGCCTGCGCGAAGCTCAGCAGTATTACCTCAGTAGCC
TCGATCTTAGCGACCGCGAAGCTCCTCCCACTCAGTTGATGGCCGATACC
TACCGCTACCTGGGAATCTTGAGCAACGTATCGGGCGAGAATACCGAAGC
GCTGCGCTACCATGACCGGGCTTTGGAGATTTACTCCAAGCTACGTCTGC
TACTCGGGCAGGCCAAAACCTACAGCTCGGTTGGCCAGACCTGCCTTGAT
CTCTCGCGCCTGGACGAGGCGCTCTACTTCACCCATAAAGCCGAACGGAT
TTCTCGGCGCCTGGGCGCGGAAGCCGAAGTCGCCGCTATCTACGGCAAAC
TTGGCAACATTTACGTGCAGATGGGCGACTACAATCGGGCCGTCGAGTTC
CACCTCAAGGACGTGGAAATGTGCCGGCGCTTTGGGAATTATCGCGCGAT
CGCTTATGCAATGCACAATCTGGGCCTGAGCTATCGTGGTAAGGGCGAGA
TCAGCGAAGCCATCCACTATCTCCAGGAGAGCCTCAGTCGTTTTCAGGAG
TTAGCCGATAATCTACAGGTGACCCGGCTGCTGCTAGATCTGGCCCGCAC
CTGCCTGGACCGCAGCCGCCTGGCCGACGCCGAGGAATATCTCGTCACCG
CCGACAGCCAGATCGCCCGAGACCCTCATAATCCGCATCTGGGCTATCTG
CAGCTACTCCTGGGCAGCCTTTATCGCCTCCAGCAGAACCCTGAGGAAGC
CCGAGATCTCCTCGAGCAAGCCATCGACGTTCTCTCGGTCAATACCGCTT
CCACTCATCTGGCCCAGGCCAACTTCGAGCTGGGTCTGCTGATGGCCGAA
GCTGGCAATAAGGAAGTCGCTCTGGAACATCTCAAAACGGCACTGCGTCT
TTCCCGCACGCTGGAAATGCGCAACGTGATGCTCGATTGTATCGCCCAGA
TCGAGCGCCTGGACGAGCTGGAGCTGGTCAAGGTTCTTCTTGAA
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